Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00807 ATGATACGTAACCTGCTAGACTCACCCGCTGAAAGAGAAACAGGCAATTTCATCTCCCTCGCCTCGTGCTTCTGTAGGGGTTCCGAGATCGTTTCTACGGTTCCTTCCTTCCTTCCTTCCCTCCTCCACCTTCACTCTCTAGGGCACGACAATCTGAAGGATTGGTCTGGAAGCCTTCGACTTCCTCCCGATCTTTTCTCTTCTTCCATGGCGGACTCTTCTTCTCCCCCTGCAACCCTCGATTCAAATCCTCAAGCTGCCGAGCCCGAAAACCCCAATCCACAGGCCAAGAAACCTGAATCTGCCGCTTCTTCTTTTCCTCCTACGCAATCGTTACCACCAGCACCGATTTCGGTTGGAATAAACCCTACCTTGCATTCGCCGTTGGTGTCCACGCCGCAACCGCCTCCTTCTTTATCGTATGGCCCGCCGCCCGGTACTGTGGCTGTTCCTCCGACGGCTCCGTCTTTTCGGCCGGTGCCTCTCGGAGTTCATCAGTTCTCGCCTATGCCTGGCACTGGCATGCTGAACCCAAGCTATCCAAACCCTGGGGTTCAGCCTCCCGGTGTTAGTTCGGTTCCGGCGCCTGCTTCTGGTATGGCAAGTGGCGTTACGGGAGCTGTTCCTGTTCCAGCGCCACAACAGATGATGGCTTATCAAGTTCCACCGGGTCAGGTTCCAAATCCGGCGATGAGGCCGTACGCCACTATGCCTAATGGTTTCGCAGCTGCTACTCCTCAAGGAGCATTTCTTCCCCCTGGTGGGTTGGAAGGCTTCATATTGCTTAGAGAACTCCCAACTACAACTCCTTTTTTGGGAGTTCCTCGTTTTGCTTCTCCATTTCCTGGTATGATTCGGACACCTTTTCCTCCACGCCCACCTGGTGCTATGGGCATGATGCCAGGAATGCCACGGCCTCCTATTCCAGGGATTCCTGGTGTTCGTCCAATCATCCCTCCTGTGGTTAGACCTGCTATTCTCCCAAGTGTCACACCTGCTGAAAAACCACAAACTACAATTTATATTGGCCGAATTGCTCAATCAGTGGAAAATGATTTCATGCTGTCCCTTCTTCAGCTATGTGGACCAGTGAAGAGTTGGAAACGGGCCCAAGATCCTTCAGATGGAACTCCTAGAACCTTTGGATTCTGCGAGTTTGAGTCTGCTGAAGGTGTTCTTCGTGCACTACGATTACTGACGAAGTTAAACATTGATGGACAAGAGCTAGTGCTAAAAGGTACTCAAGCAACAAGAGATTATCTGAAGCGTTATGTTGAAAAGAAAGCAGAGAATTCAAAAAAACTGAAAGAAACACAAGTTTCGGAGACTAAGGAAGAAGAAGCTGATGCAGCGAATGTGGCAAAAAATGAAACTTCAAAGCCCCCTGCAGAGGATTCAAAAGAGGACCGTGATTCAGGGGAAAAGGAAGATCATGACATTGCCTGTTCTGCAGTTTTAAGTGATGAAGATAGAGAGGCTGATCGAGAGGCATCAGAAAAGCTTACAAATGCTCTGGAGGAGAGGTTGAAGTCTAGACCTCTGCCACCACCTCCTCTACTGACAACTGCTGATGTTTCTGGAAATTCAAGTGCAGAGCCATCTGCTAAACTGAAAGATGGTGAATATGACGTTGATATTTTGAAAAGTGATGCAGCTGATGATAGAAATGATGATGATTCAACTAGCGACAATAAACAAACTAGTGAGCAGCACGACAAGCCTGAAACAAGCTCACCTGATAGAAGTAGAAGGTATGACAGGAGAAGTCGAGAAAGAGACAGGGAGCGAGATTTAAAAAGGGACAAGGAGCGGGAAATTGAGAGATATGAAAGAGAGACAGAGCGGGAACGAGCTAGGAAAGAGAGGGAACAAAGAAGAAAGATTGAAGAGATTGAGCGACAGTATGAAGAATGTCTTAAAGAGTGGGAATATCGAGAAAGAGAGAGAGAAAAGCAGAGGCAGTATGAGAAGGAGAGAGAGAAAGAGAAAGAGCGTAAAAGGAAGAAAGAGATATTGTATGATGAAGATGATGAGGATGATGATTCAAGAAGAAAATGGCGCAGAGGTGCTCTGGAGGAAAAGAGGAAGAAGAGATCTAGAGAAAAGGAAGATGATTCAGTTGATAGACAGAGAGAGGAAGAAGAAATTGCCGAGGCCAAAAGAAAGGCCGAGGAGGAACAGCTGCAAAAACTGAGAGATCCACCAAAACTTCTACCTGTTCAGATGATGAATATCAATGAGAAAATTGTTCTTCCTGAAGAACCTGCTAACGAGATTAAATTTTTGACTTCAGAACGTGATTCTGAGCTTGACTCGGGCCGTGAGAATCATATAGGTAATTGTCTTACATGGGATGGGTTTTTACAAAATGGTAGTGGTGATGAACTAAATATAATACCATCAGAGACCCGTCAGAGTGAATGCTTGCCTGCAAAAAGGTTAGGATTTGGTATAGTAGGTTCCGGAAAACGGACTACTGTACCTTCAGTTTTTCACGAGGAGGATGATGAAGCACAGAAAGAGAAGAAAATGAGGCCACTGGTTCCAATCGATTACTCAGCTGAGGAACTCCAAGCTGTGCAGCCTTCTAGTACTGGGGCTTTGCCACCAAATTTAGCTGCAGCAGCCGAATTTGCAAAACGTATATCAAATGTCAATTCTAAAGAAGAGAAGCCTGATAGTGAAAGGGAGCGAGGAAGGCGTCCCAGTGAAAGATCTAGTCAGCGGGATAGAGACCGAAATGATGAGGATACCTATCGCAGCAAAGATGAGAACAAGACAACAGACAGAGATAGGGAGCGAGACCGTGTTTTGGATAAAGTAAAAACACCAGACAACAAAAAGCTGTTGGATGCGAAACAGTTGATTGATATGATTCCCAAGACAAAGGAGGAATTATTCTCATACGACATAAATTGGGCAATTTATGAAAAGCATGCATTACATGAGAGAATGAGACCGTGGATTTCGAAAAAGATAACAGAGTTTTTGGGGGAAGAGGAAACCACTCTTGTCGATTACATAGTTTCGAGTACTCAGGAACACGTAAAAGCATCTCAAATGCTGGAGCTGCTTCAGTCAATTTTGGATGAAGAAGCTGAAATGTTCGTTCTGAAGATGTGGAGAATGCTTATCTTCGAAATAAAAAAGGTAGAAACTGGTCTAGCTTTCAGATCAAAAGCATGA 3186 45.73 MIRNLLDSPAERETGNFISLASCFCRGSEIVSTVPSFLPSLLHLHSLGHDNLKDWSGSLRLPPDLFSSSMADSSSPPATLDSNPQAAEPENPNPQAKKPESAASSFPPTQSLPPAPISVGINPTLHSPLVSTPQPPPSLSYGPPPGTVAVPPTAPSFRPVPLGVHQFSPMPGTGMLNPSYPNPGVQPPGVSSVPAPASGMASGVTGAVPVPAPQQMMAYQVPPGQVPNPAMRPYATMPNGFAAATPQGAFLPPGGLEGFILLRELPTTTPFLGVPRFASPFPGMIRTPFPPRPPGAMGMMPGMPRPPIPGIPGVRPIIPPVVRPAILPSVTPAEKPQTTIYIGRIAQSVENDFMLSLLQLCGPVKSWKRAQDPSDGTPRTFGFCEFESAEGVLRALRLLTKLNIDGQELVLKGTQATRDYLKRYVEKKAENSKKLKETQVSETKEEEADAANVAKNETSKPPAEDSKEDRDSGEKEDHDIACSAVLSDEDREADREASEKLTNALEERLKSRPLPPPPLLTTADVSGNSSAEPSAKLKDGEYDVDILKSDAADDRNDDDSTSDNKQTSEQHDKPETSSPDRSRRYDRRSRERDRERDLKRDKEREIERYERETERERARKEREQRRKIEEIERQYEECLKEWEYREREREKQRQYEKEREKEKERKRKKEILYDEDDEDDDSRRKWRRGALEEKRKKRSREKEDDSVDRQREEEEIAEAKRKAEEEQLQKLRDPPKLLPVQMMNINEKIVLPEEPANEIKFLTSERDSELDSGRENHIGNCLTWDGFLQNGSGDELNIIPSETRQSECLPAKRLGFGIVGSGKRTTVPSVFHEEDDEAQKEKKMRPLVPIDYSAEELQAVQPSSTGALPPNLAAAAEFAKRISNVNSKEEKPDSERERGRRPSERSSQRDRDRNDEDTYRSKDENKTTDRDRERDRVLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYDINWAIYEKHALHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGLAFRSKA 1061
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9514285 9520531 + CmoCh18G008070.1 Cmo18g00807 402580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00807 1061 MobiDBLite consensus disorder prediction 646 735 - -
Cmo18g00807 1061 MobiDBLite consensus disorder prediction 67 90 - -
Cmo18g00807 1061 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 78 1060 - -
Cmo18g00807 1061 SUPERFAMILY RNA-binding domain, RBD 294 411 IPR035979 GO:0003676
Cmo18g00807 1061 Pfam PWI domain 984 1047 IPR002483 GO:0006397
Cmo18g00807 1061 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 423 IPR000504 GO:0003723
Cmo18g00807 1061 Coils Coil 426 446 - -
Cmo18g00807 1061 CDD RRM_RBM25 338 421 IPR034268 -
Cmo18g00807 1061 Coils Coil 702 729 - -
Cmo18g00807 1061 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 409 IPR000504 GO:0003723
Cmo18g00807 1061 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 78 1060 - -
Cmo18g00807 1061 Gene3D PWI domain 940 1056 - -
Cmo18g00807 1061 MobiDBLite consensus disorder prediction 883 940 - -
Cmo18g00807 1061 Gene3D - 330 452 IPR012677 -
Cmo18g00807 1061 MobiDBLite consensus disorder prediction 460 507 - -
Cmo18g00807 1061 ProSiteProfiles PWI domain profile. 964 1061 IPR002483 GO:0006397
Cmo18g00807 1061 MobiDBLite consensus disorder prediction 129 153 - -
Cmo18g00807 1061 Coils Coil 592 641 - -
Cmo18g00807 1061 MobiDBLite consensus disorder prediction 646 732 - -
Cmo18g00807 1061 MobiDBLite consensus disorder prediction 66 153 - -
Cmo18g00807 1061 MobiDBLite consensus disorder prediction 431 453 - -
Cmo18g00807 1061 SMART rrm1_1 339 412 IPR000504 GO:0003723
Cmo18g00807 1061 Coils Coil 645 672 - -
Cmo18g00807 1061 SMART pwi_2 977 1050 IPR002483 GO:0006397
Cmo18g00807 1061 MobiDBLite consensus disorder prediction 536 626 - -
Cmo18g00807 1061 MobiDBLite consensus disorder prediction 431 626 - -
Cmo18g00807 1061 SUPERFAMILY PWI domain 982 1049 IPR036483 GO:0006397
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00807 K12822 RBM25, S164; RNA-binding protein 25 - csv:101214372 1039.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00807 Cmo-Chr18:9514285 Cmo04g01810 Cmo-Chr4:9119602 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00807 Cmo_Chr18 FPKM 131.449066 130.347748 184.008499 193.184372 108.990997 109.125221 111.707222 588.385315 564.73584 599.598145