Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00810 ATGGCGGCGGCGGCGGCGGCGGCGAAGAAACTGGAAAATGGGGTCTCCGCCTCAGAGTCCGACGGTATTTCCTCTGTGATTCCTGGATGGTTTTCTGAAATCAGCCAAATGTGGCCGGGAGAGGCGCACTCCTTGAAGGTGGAAAAGATTCTGTTCCAAGGGAAATCTGATTACCAGAATGTTATGGTTTTTCAGTCATCAACTTATGGGAAGGTTCTGGTCTTGGATGGAGTGATTCAGCTAACAGAGAGAGATGAATTTATTGGTGGAGGAGATGGCGGTGTCTTGCGAGAGGTAGCTCGCCATTCGTCTGTTGAGAAGATAGATATCTGTGAAATCGACAAGATGGTAGTTGATGTTTCCAAAGAATTTTTCCCTCGCGTAGCTATTGGGTACGAGGATCCTCGTGTCACACTTCACGTCGGTGATGGCGTTGCATTTCTGAAGGCTGTTCCTGAAGGCACTTATGATGCTGTTATAGTGGACTCATCTGATCCTATTGGTCCTGCACAAGAGCTTTTCGAGAAGCCTTTTTTTGCCTCGGTCGCCAAAGCTCTTCGACCGGGAGGTGTCGTGTGTACTCAGGCAGAGAGCATTTGGCTTCACATGAAAATCATTGAAGACATTGTAACAAACTGCCGCCAAGTATTCAAAGGCTCTGTCAACTATGCTTGGACTACTGTTCCTACATATCCAAGCGGAGTGATCGGGTTTATGCTCTGCTCGACCGAGGGACCTCCTGTTGATTTCAAGCATCCAGTCAACCCAGTAGAGGTGAACGGCATCGATACCCCAAACAATCCGCTTAAGTTTTACAACTCCGAGATTCATTCAGCAGCTTTCTGCTTGCCTTCATTTGCAAAGAAGATCATCGATTCAAAAGCTAATTGA 891 47.47 MAAAAAAAKKLENGVSASESDGISSVIPGWFSEISQMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDEFIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKEFFPRVAIGYEDPRVTLHVGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFASVAKALRPGGVVCTQAESIWLHMKIIEDIVTNCRQVFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPVEVNGIDTPNNPLKFYNSEIHSAAFCLPSFAKKIIDSKAN 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9533908 9537776 + CmoCh18G008100.1 Cmo18g00810 402583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00810 296 Gene3D Spermidine synthase, tetramerisation domain 22 80 IPR037163 -
Cmo18g00810 296 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 26 292 IPR029063 -
Cmo18g00810 296 Hamap Polyamine aminopropyltransferase [speE]. 29 292 IPR001045 GO:0003824
Cmo18g00810 296 Gene3D Vaccinia Virus protein VP39 82 296 IPR029063 -
Cmo18g00810 296 PANTHER SPERMIDINE SYNTHASE-RELATED 88 296 - -
Cmo18g00810 296 CDD AdoMet_MTases 88 195 - -
Cmo18g00810 296 Pfam Spermidine synthase tetramerisation domain 29 83 IPR035246 -
Cmo18g00810 296 PANTHER SPERMIDINE/SPERMINE SYNTHASE 12 86 IPR001045 GO:0003824
Cmo18g00810 296 PANTHER SPERMIDINE/SPERMINE SYNTHASE 88 296 IPR001045 GO:0003824
Cmo18g00810 296 PANTHER SPERMIDINE SYNTHASE-RELATED 12 86 - -
Cmo18g00810 296 Pfam Spermine/spermidine synthase domain 88 251 - -
Cmo18g00810 296 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 28 243 IPR030374 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00810 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101213410 516.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01418 Cmo-Chr6:10321581 Cmo18g00810 Cmo-Chr18:9533908 2.83E-29 dispersed
Cmo10g00140 Cmo-Chr10:648065 Cmo18g00810 Cmo-Chr18:9533908 5.66E-127 dispersed
Cmo13g00925 Cmo-Chr13:8161792 Cmo18g00810 Cmo-Chr18:9533908 7.65E-111 dispersed
Cmo18g00810 Cmo-Chr18:9533908 Cmo18g01338 Cmo-Chr18:12673980 9.30E-115 dispersed
Cmo12g00002 Cmo-Chr12:5948 Cmo18g00810 Cmo-Chr18:9533908 9.05E-105 wgd
Cmo18g00810 Cmo-Chr18:9533908 Cmo04g01804 Cmo-Chr4:9088749 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00810 Cmo_Chr18 FPKM 42.418472 48.009403 13.062746 12.77029 37.880333 28.785675 40.369804 3.308133 2.051131 2.549374