Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00812 ATGTCAAATTCTGAAACTGCCGACAGCTCTAATGGCGCCGCCATCGACACCCACAAAAACCAGCCCTCTTCCAACGGAGCCCTCGCCGTTAAAAAGCCCCCTTCCAAGGACCGCCACAGCAAGGTGGACGGCCGTGGCCGTCGCATCCGTATGCCCATAATCTGCGCCGCTCGTGTCTTCCAGCTGACTCGTGAACTTGGTCATAAATCCGATGGCCAAACCATCGAGTGGCTCCTCCGTCAAGCAGAGCCTTCCATTATTGCTGCCACCGGCACCGGCACTACTCCCGCTAATTTCTCTTCCATCTCTCTCTCCGTCAGAGGAAATGGCAGCTCCGCCTCTCTCTCTTCCACTACTTCCACTCTCTCCCTCTCTCGCCCCCAGCCGTTCATTCTCGGGAAGCGTGTCAGAGCCGACGACGACGGCGGTACTGACGATGGGTTGGGAGTGGGTCCGAGTGGGTACTGGGCGATTCCGGCCAGACCGGATTACGGGCAGGTGTGGAGTTTCGCGGCTGCCGCCGCCGCGGAACAGAGGATTTCTCAGCCGGCGTCGTTGTTTGCTCAACAGCAACAGCCGATTAGAGAAGCATCGGCAGCAAGAGTTGGGAATTACCTTCCGGGTCATCTGAATTTACTGGCGTCCTTGTCCGGTGGCGGCGGTGCCGGCCGGCGGGAAGACGACTGTCGTTGA 693 59.16 MSNSETADSSNGAAIDTHKNQPSSNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSISLSVRGNGSSASLSSTTSTLSLSRPQPFILGKRVRADDDGGTDDGLGVGPSGYWAIPARPDYGQVWSFAAAAAAEQRISQPASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGAGRREDDCR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9545980 9546672 + CmoCh18G008120.1 Cmo18g00812 402585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00812 230 MobiDBLite consensus disorder prediction 32 47 - -
Cmo18g00812 230 MobiDBLite consensus disorder prediction 1 47 - -
Cmo18g00812 230 ProSiteProfiles TCP domain profile. 35 89 IPR017887 -
Cmo18g00812 230 Pfam TCP family transcription factor 35 125 IPR017887 -
Cmo18g00812 230 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 1 226 - -
Cmo18g00812 230 MobiDBLite consensus disorder prediction 1 28 - -
Cmo18g00812 230 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 226 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00812 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - csv:101206050 323.553
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02347 Cmo-Chr4:17436112 Cmo18g00812 Cmo-Chr18:9545980 5.86E-79 dispersed
Cmo10g00203 Cmo-Chr10:910288 Cmo18g00812 Cmo-Chr18:9545980 2.15E-39 dispersed
Cmo11g00159 Cmo-Chr11:799344 Cmo18g00812 Cmo-Chr18:9545980 5.89E-40 dispersed
Cmo15g00816 Cmo-Chr15:4063640 Cmo18g00812 Cmo-Chr18:9545980 3.67E-83 dispersed
Cmo18g00812 Cmo-Chr18:9545980 Cmo18g01183 Cmo-Chr18:11881839 1.56E-40 dispersed
Cmo18g00812 Cmo-Chr18:9545980 Cmo04g01331 Cmo-Chr4:6776828 2.27E-110 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo15g00816 . 31 253 TCP Transcription Factor Family AT5G23280 62.2 1.3e-64 243.8
Cmo04g02347 . 36 264 TCP Transcription Factor Family AT5G23280 61.0 3.0e-64 242.7
Cmo04g01331 . 145 359 TCP Transcription Factor Family AT5G23280 61.4 1.1e-63 240.7
Cmo18g00812 . 33 230 TCP Transcription Factor Family AT5G23280 58.0 1.2e-57 220.7
Cmo17g00006 . 65 341 TCP Transcription Factor Family AT2G45680 50.5 5.0e-57 219.2
Cmo18g01183 CST 56 146 TCP Transcription Factor Family AT3G47620 92.3 5.3e-41 166.4
Cmo04g01729 CST 59 153 TCP Transcription Factor Family AT3G47620 88.7 5.8e-40 162.9
Cmo13g01176 CCT,ECH 36 134 TCP Transcription Factor Family AT3G47620 83.8 3.8e-39 160.2
Cmo04g01953 . 130 212 TCP Transcription Factor Family AT3G47620 90.4 1.7e-36 151.4
Cmo04g01953 . 130 222 TCP Transcription Factor Family AT1G69690 82.8 2.0e-36 150.6
Cmo14g00744 . 1 313 TCP Transcription Factor Family AT3G27010 55.3 1.7e-61 233.8
Cmo11g01602 . 29 272 TCP Transcription Factor Family AT3G27010 55.5 4.5e-54 209.1
Cmo17g01372 . 269 486 TCP Transcription Factor Family AT3G27010 53.2 6.4e-48 188.7
Cmo15g00816 . 1 252 TCP Transcription Factor Family AT5G08330 60.2 9.7e-65 244.2
Cmo04g02347 . 1 263 TCP Transcription Factor Family AT5G08330 56.7 9.1e-63 237.7
Cmo04g01331 . 117 357 TCP Transcription Factor Family AT5G08330 55.2 1.5e-60 230.3
Cmo18g00812 . 10 228 TCP Transcription Factor Family AT5G08330 56.2 2.3e-58 223.0
Cmo11g00214 CCT,CST 31 179 TCP Transcription Factor Family AT5G60970 56.7 2.3e-38 157.1
Cmo14g01189 . 28 139 TCP Transcription Factor Family AT3G02150 66.4 2.6e-37 153.7
Cmo11g02005 . 8 162 TCP Transcription Factor Family AT2G31070 54.3 1.7e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11519 PF03634 TCP 7.10E-34 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00812 Cmo_Chr18 FPKM 0.744328 0.989757 1.645511 0.717885 5.344588 5.099867 5.296239 1.131014 1.310957 1.118544