Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00813 ATGGCTTCTAGGCTCTGGGAAGATTTCTCGTTCCTTAGTTCTTGGAACTCGATCTTGCATCCAAGTTTATCGGGGAACATGTCTCGGAAATCCCAGGGGATGATTTCATTACAATCCATTAAATCCATGCCAGCTAGTTCTCGGTTCATGATTCCGCAAGAAGCTGAAGCTTTGGAAGAGCCTTATAATCGGAATGTGAAAAACATGGAAGCTAATTCGTTAGTTGATGGCGAAAATGGTGCTTCTGGAGTTGATCGACTTCGATCCAGTATGAACAATAGTGACGTGCTGAATGAGGATTCACCGTATAATTTCAATATTAAAACAGTGGAAGAAAGACCCGCGCTGGAAGATGGAGAAGATGGTTCTATGTCTTTACCTTCACCTTCAAATTCGGCTTCACATAGTGAAAGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATGCATCAATCTTGGTTTAAACTTCCAAATGGCGATTGGGATCTTGTAAATATACTGTCAACTACAGGAACAGAATCAGTAGTTTCACTGACTGAAGGAAAGGTGTTAAAGGTGAAAGCTGAAAATTTAATTTCTGCAAATCCAGATATCCTTGATGGCGTTGATGATCTTATGCAACTTAGCTATCTAAATGAACCTTCAGTGTTGTATGATCTTGAGTACAGATATAATCAGGATCTTATATATACAAAAGCAGGGCCAGTTCTGGTTGCTACCAATCCTTTTAAGAAAGTTGACTTGTATGGAAGTGATTACATTGAAGCATACAAGCGCAAAACGGCTCAGAGCCCGCATGTTTATGCCATTACAGATACAGCCATCAGAGAGATGATTCGAGATGAAGTAAATCAATCAATTGTAATAAGCGGTGAAAGTGGAGCTGGAAAAACTGAAACAGCAAAGATAGCAATGCAATATTTGGCAGCCCTTGGCGGTGGAAGTGGAATAGAGTTTGAGATATTGAAGACCAATCCCATCTTAGAAGCTTTTGGAAATGCAAAAACTTCGAGAAATGACAACTCAAGCCGCTTTGGAAAATTGATTGAAATCCATTTTAGTGAAACTGGGAGAATCACTGGTGCAAATATTCAAACTTTTTTGCTGGAAAAGTCTAGAGTTGTTCAATGCACGGAGGGAGAAAGGTCATACCACATCTTTTATCAACTTTGTAGTGGGGCTCCTCCTGCACTTAAAGAGAGGCTGAACTTGAGAAGAGCGGAAGAGTACAAATATCTCAGCCAGAGCAATTGTTTTTCAATAAATAGAGTAAATGATGCTGAAGAGTTTCGTATTGTCACGGAAGCACTAAATGTCGTCCATATCAGCCAAGAAGATCAGCACAGCGTATTTGCAATGCTTGCTGCTGTGCTGTGGCTGGGAAATGTTTCCTTTAGCGTGATAGACAATGAGAATCATGTGGAAGTCGCGGAAGATGAAGGTTTACAGACTGTTGCTAAACTGATTGAGTGTGATATTGAGGAGCTTAAACTAGCTTTATCAACTCGAAAAATGAGAGTTGGAAATGACAGCATTGTCCAAAAGCTTACTTTACCTCAGGCAATTGACACTCGAGATGCTTTGGCGAAGTCAATTTATGCTTGTTTGTTTGAGTGGTTGGTTGAACAAATTAACAAATCTCTTGCCGTAGGCAAAAGGCGAACTGGAAGATCCATCAGCATTCTTGATATCTATGGCTTTGAATCATTTGATAGGAATAGTTTTGAACAATTCTGCATTAACTATGCAAATGAGAGGTTACAGCAGCATTTCAATCGTCATTTATTTAAGCTCGAGCAGGAGGAATATATTCAAGATGGTATCGACTGGGCAAAAGTTGATTTTGACGACAACCAAGATTGTCTCAGTCTGTTTGAAAAGAAACCTTTGGGATTGTTGTCCCTGTTAGACGAGGAGTCTACTTTCCCAAATGCCACAGATATGACCTTTGCAAACAAGCTGAAGCAGCATTTGCGTCGTTCTTCTTCTTTTAGAGGAGAACGAGGGAAAGCCTTTACTGTCTGTCATTATGCAGGAGAGGTCACTTATGATACAACTGGTTTTCTGGAGAAAAACCGGGACTTGCTACATTTAGATTCTATTCAACTCCTATCCTCGTGCTCGTGCCATCTCCCTCAGGCTTTTGCATCCAACATGCTAACTCAATCGGAAAAGTCCATTGGTGGCACTTCACATAAGTCTGGTGGTGCAGAATCCCAAAAACTGAGTGTTGCCAGAAAGTTTAAGGATCAATTATTCCAATTGATACTCCGTCTTGAAAATACGACACCTCATTTCATCCGTTGCATCAAGCCTAACAAACTTCAGTCTCCTGGATTGTATGAGCAAGGACTTGTATTACAACAGTTAAAATGTTGTGGGGTCCTAGAAGTGGTACGAATATCACGAGCTGGATTTCCTACTCGGATGTCGCATAAGAAATTTTCTCGAAGGTACGGTTTCCTTCTACAAGAAAGCCTTTCATCGCAGGATCCACTAAGCGTCTCGGTCGCAATTCTTCATCAATTCAATATATTGCCTGAAATGTACCAAGTTGGCTATACAAAATTGTTTTTCCGAACTGGGCAGATTGGAGTGCTTGAAGATACAAGAAACCGCACCCTTCACGGAATCCTCTGTGTTCAAAGCTGTTTTAGAGGGCACCTGGCTCGTTGCCACATCAAAGAGCTGAGAAAAGGGATTTCCACTCTTCAGTCATTTGTACGTGGGGAGAAAACCAGAAAAGAGTATGCTATCTTGTTACGAAGGCATAGGGCTGCTATTTCTATTCAGAAGTATCAGAAAGCCAGAATTGCTAGAAAACGTTCGAAGGAGGTTTGTGATGCATCAGTCGTGATACAATCAGTTATCCGTGGTTGGTTGGTAAGAGGATGCTCCGGAAATATAGGATTGATGAGTCCTGGTGGTCTTTCGGGAAATGGATCAGGGGATGTGCTTGTCAAGTCATCATTCCTTGCGGAATTACAACGCCGTGTCATGAAGGCTGAGGCCACTTTGAGAGATAAAGAAGAAGAAAACGACATCCTCCATCAACGCGTTCAACAGTACGAGAACCGATGGTCAGAGTATGAACTGAAAATGAAGTCAATGGAAGAGATGTGGCAGAAACAAATGAGATCCCTGCAATCTAGCCTCTCCATTGCAAAGAAAAGCTTATCAGTTGATGATTCAGATAGAAATTACGACGTATCAGTCAATGCAAGCCACGAAAGAGGATACAGCTGGGAATTGGGTACCAACAACACAACTAATGAAATCAATGGAGTAAGACCAATGAATGCAGGTCTTAGTGTCATTAGCCGATTAGCCGAAGAATTCGACCAACGAAGTCAAGTCTTCGGCGATGATGCAAAGTTCTTAGTAGAGGTAAAATCCGGTCAAGTTGAGGCAAGTATCGACCCAGATAGGGAATTCAGAAGGTTGAAACAAATGTTTGATGCATGGAAGAAAGATTACGGGGGACGACTACGCGAAACGAAAGTGATTTTAAATAAGATCGGGAATGACGGTGCCATGGATAGAGTGAAAAGGAAATGGTGGGGAAGGAGGAACAGCACGAGGATATAG 3594 41.71 MASRLWEDFSFLSSWNSILHPSLSGNMSRKSQGMISLQSIKSMPASSRFMIPQEAEALEEPYNRNVKNMEANSLVDGENGASGVDRLRSSMNNSDVLNEDSPYNFNIKTVEERPALEDGEDGSMSLPSPSNSASHSESRWGDTSSYTPRKMHQSWFKLPNGDWDLVNILSTTGTESVVSLTEGKVLKVKAENLISANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDLIYTKAGPVLVATNPFKKVDLYGSDYIEAYKRKTAQSPHVYAITDTAIREMIRDEVNQSIVISGESGAGKTETAKIAMQYLAALGGGSGIEFEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGRITGANIQTFLLEKSRVVQCTEGERSYHIFYQLCSGAPPALKERLNLRRAEEYKYLSQSNCFSINRVNDAEEFRIVTEALNVVHISQEDQHSVFAMLAAVLWLGNVSFSVIDNENHVEVAEDEGLQTVAKLIECDIEELKLALSTRKMRVGNDSIVQKLTLPQAIDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNATDMTFANKLKQHLRRSSSFRGERGKAFTVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQAFASNMLTQSEKSIGGTSHKSGGAESQKLSVARKFKDQLFQLILRLENTTPHFIRCIKPNKLQSPGLYEQGLVLQQLKCCGVLEVVRISRAGFPTRMSHKKFSRRYGFLLQESLSSQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILCVQSCFRGHLARCHIKELRKGISTLQSFVRGEKTRKEYAILLRRHRAAISIQKYQKARIARKRSKEVCDASVVIQSVIRGWLVRGCSGNIGLMSPGGLSGNGSGDVLVKSSFLAELQRRVMKAEATLRDKEEENDILHQRVQQYENRWSEYELKMKSMEEMWQKQMRSLQSSLSIAKKSLSVDDSDRNYDVSVNASHERGYSWELGTNNTTNEINGVRPMNAGLSVISRLAEEFDQRSQVFGDDAKFLVEVKSGQVEASIDPDREFRRLKQMFDAWKKDYGGRLRETKVILNKIGNDGAMDRVKRKWWGRRNSTRI 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9552702 9567024 + CmoCh18G008130.1 Cmo18g00813 402586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00813 1197 PRINTS Myosin heavy chain signature 328 355 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo18g00813 1197 PRINTS Myosin heavy chain signature 232 251 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo18g00813 1197 PRINTS Myosin heavy chain signature 560 588 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo18g00813 1197 PRINTS Myosin heavy chain signature 286 311 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo18g00813 1197 PRINTS Myosin heavy chain signature 613 641 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo18g00813 1197 PANTHER MYOSIN 116 1197 - -
Cmo18g00813 1197 SMART MYSc_2a 196 875 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo18g00813 1197 Pfam Myosin head (motor domain) 204 862 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo18g00813 1197 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 116 1197 - -
Cmo18g00813 1197 MobiDBLite consensus disorder prediction 124 145 - -
Cmo18g00813 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 922 IPR027417 -
Cmo18g00813 1197 CDD MYSc_Myo8 216 862 IPR036022 -
Cmo18g00813 1197 ProSiteProfiles IQ motif profile. 878 905 IPR000048 GO:0005515
Cmo18g00813 1197 Gene3D - 927 967 - -
Cmo18g00813 1197 Gene3D - 878 926 - -
Cmo18g00813 1197 ProSiteProfiles Myosin motor domain profile. 202 874 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo18g00813 1197 ProSiteProfiles IQ motif profile. 899 928 IPR000048 GO:0005515
Cmo18g00813 1197 Pfam IQ calmodulin-binding motif 951 965 IPR000048 GO:0005515
Cmo18g00813 1197 Pfam IQ calmodulin-binding motif 900 919 IPR000048 GO:0005515
Cmo18g00813 1197 Pfam IQ calmodulin-binding motif 880 897 IPR000048 GO:0005515
Cmo18g00813 1197 Gene3D Myosin VI head, motor domain, U50 subdomain 445 742 - -
Cmo18g00813 1197 Gene3D - 807 875 - -
Cmo18g00813 1197 MobiDBLite consensus disorder prediction 117 145 - -
Cmo18g00813 1197 Gene3D - 570 764 - -
Cmo18g00813 1197 Gene3D - 384 443 - -
Cmo18g00813 1197 Gene3D Kinesin motor domain 205 803 IPR036961 -
Cmo18g00813 1197 Coils Coil 994 1042 - -
Cmo18g00813 1197 SMART iq_5 875 897 IPR000048 GO:0005515
Cmo18g00813 1197 SMART iq_5 947 969 IPR000048 GO:0005515
Cmo18g00813 1197 SMART iq_5 924 946 IPR000048 GO:0005515
Cmo18g00813 1197 SMART iq_5 898 920 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00885 Cmo-Chr9:4595995 Cmo18g00813 Cmo-Chr18:9552702 0 dispersed
Cmo18g00813 Cmo-Chr18:9552702 Cmo10g00772 Cmo-Chr10:3574855 0 dispersed
Cmo18g00813 Cmo-Chr18:9552702 Cmo04g01333 Cmo-Chr4:6791952 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00813 - - csv:101222101 2068.51