Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo18g00829 | ATGGGAAAGCTAAGCTTGAGCTGTTGGAGTAGCTTTGTTGAGAATTCAAAGCCTTACTTTGCCATGATATCTTTACAATTTGGATATGCTGGCATGAACATCATCTCCAAAGTCTCTCTTAGTAGAGGGATGAGCCATTACGTTCTCGTCGTATATCGACACGCTTTCGCTACCGCTTCTATTGCTCCCTTCGCTTTCTTCTTCGAACGGAGAGAACAACCGAAAATAACACTCAAAGTTTTCACTCAAATCTTCGTGTTGGCTTTGCTTGGCCCTGTTATCGATCAAAACTTCTATTATGCTGGATTGAAATACACTTCACCAACTTTCTCGTGTGCCATGAGCAACATGCTGCCTGCAATGACATTCGTGATGGCTGTGATCTTCAGGATGGAAAAATTAGAGATGAAGAAGCTGAGATGCCAAGCCAAGTTCTTGGGAACTTTAGTGACGGTGGTTGGTGCTATGCTGATGACATTATACAAAGGCCCATTGATTCAAATGGCTTGGTCTAAACACTCTCATGTTCCCACAAGTTCTAATGATCAAGCTTCTGCCAATAAAGATTGGTTCAAAGGCTCAATCTTCCTCATTATTGCCACTCTTGCTTGGTCTTCTCTTTTCGTCTTGCAGAATCAGGCATTGAAGACATACATGAACCACCAGCTAACCCTCACCACACTAGTATGCTTTATGGGGACCTTACAAGCCATAGCTGTGACTGTAGTAGCTGAACACAAAGCTTCTGTTTGGAGAATTGGTTGGGACATGAACCTCCTTGCTGCCGCCTACGCCGGAATTGTGACGTCAAGTATTTCATATTATGTACAAGGGTTGGTGATGAAGAAGAGAGGACCTGTATTTGCAACAGCATTTAGCCCTTTGATGATGATCATTGTAGCCATCATGGGCTCTTTCATCCTATCTGAAAAAATTTACCTTGGAGGAATAATAGGATCCATCTTGATAGTATTTGGATTATATTCAGTCCTATGGGGGAAGCATAAGGAGAATTTGGAGACCAAAAGTGCTGATGATGATGCTCATAAATTACCACAAGCAATTAAGCTTTCTTCTCAACCAAATAATAATAATAATCTAAATCTCGAACCTAATAAGCTCTCGAATTCACTTATTATTTCCATGCCCGACCCTGAAAGCCCCATCAAGCCGAACCAAAACCCATGA | 1188 | 41.75 | MGKLSLSCWSSFVENSKPYFAMISLQFGYAGMNIISKVSLSRGMSHYVLVVYRHAFATASIAPFAFFFERREQPKITLKVFTQIFVLALLGPVIDQNFYYAGLKYTSPTFSCAMSNMLPAMTFVMAVIFRMEKLEMKKLRCQAKFLGTLVTVVGAMLMTLYKGPLIQMAWSKHSHVPTSSNDQASANKDWFKGSIFLIIATLAWSSLFVLQNQALKTYMNHQLTLTTLVCFMGTLQAIAVTVVAEHKASVWRIGWDMNLLAAAYAGIVTSSISYYVQGLVMKKRGPVFATAFSPLMMIIVAIMGSFILSEKIYLGGIIGSILIVFGLYSVLWGKHKENLETKSADDDAHKLPQAIKLSSQPNNNNNLNLEPNKLSNSLIISMPDPESPIKPNQNP | 395 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 9683649 | 9687903 | + | CmoCh18G008290.1 | Cmo18g00829 | 402602 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo18g00829 | 395 | Pfam | EamA-like transporter family | 192 | 331 | IPR000620 | GO:0016020|GO:0016021 | |
| Cmo18g00829 | 395 | Pfam | EamA-like transporter family | 18 | 159 | IPR000620 | GO:0016020|GO:0016021 | |
| Cmo18g00829 | 395 | PANTHER | WAT1-RELATED PROTEIN | 12 | 369 | IPR030184 | GO:0016021|GO:0022857 | |
| Cmo18g00829 | 395 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 253 | 336 | - | - | |
| Cmo18g00829 | 395 | PANTHER | WAT1-RELATED PROTEIN | 12 | 369 | - | - | |
| Cmo18g00829 | 395 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 52 | 162 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo04g02852 | Cmo18g00829 | CCT | |
| Cmo04g02852 | Cmo18g00829 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo09g00792 | Cmo-Chr9:4054770 | Cmo18g00829 | Cmo-Chr18:9683649 | 1.63E-123 | dispersed | |
| Cmo11g01277 | Cmo-Chr11:8407466 | Cmo18g00829 | Cmo-Chr18:9683649 | 5.44E-83 | dispersed | |
| Cmo11g01280 | Cmo-Chr11:8485082 | Cmo18g00829 | Cmo-Chr18:9683649 | 1.88E-82 | dispersed | |
| Cmo14g00503 | Cmo-Chr14:2492288 | Cmo18g00829 | Cmo-Chr18:9683649 | 7.13E-157 | dispersed | |
| Cmo14g00505 | Cmo-Chr14:2499757 | Cmo18g00829 | Cmo-Chr18:9683649 | 7.63E-144 | dispersed | |
| Cmo15g01404 | Cmo-Chr15:9557270 | Cmo18g00829 | Cmo-Chr18:9683649 | 2.85E-67 | dispersed | |
| Cmo18g00829 | Cmo-Chr18:9683649 | Cmo03g00455 | Cmo-Chr3:5080508 | 3.88E-119 | dispersed | |
| Cmo03g01092 | Cmo-Chr3:8612856 | Cmo18g00829 | Cmo-Chr18:9683649 | 1.05E-155 | transposed | |
| Cmo04g02086 | Cmo-Chr4:12589069 | Cmo18g00829 | Cmo-Chr18:9683649 | 8.95E-62 | transposed | |
| Cmo05g01072 | Cmo-Chr5:8634436 | Cmo18g00829 | Cmo-Chr18:9683649 | 2.00E-83 | transposed | |
| Cmo18g00829 | Cmo-Chr18:9683649 | Cmo04g01372 | Cmo-Chr4:6992590 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo18g00829 | - | - | csv:101206648 | 624.394 |