Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00852 ATGCTAAAGGGTTTTCCTGGAAGAAGATCGGACTCATTTCTGAAGCCTTTGGCGAGCAGTTTTGCTAGGGTTGTGTTAACGGAAAACATGGAGGAGACGAAGCCATCAGCTACAAATAATTGCCATACCGATGGCGAACCAGACACTGTTGAAGTTCAATTCACAGAATTGTGTCAGAATGGATTACATCTGGACGAGAGTTGTTGTAATCAAGCGTTGAAGTTATTTAGAGAAACCAAGCACCTTTTGGTGGCGAATATATCAGCAATTGGGAGTGGAATTCCTGAAGAAGCCGAACGTTTTTGGTCTGCTTTTGTTTTATATTCTGTGAAGAGGCTGAGAGATAAGGATCCAGAGAGTTCACATTCAGGACCTGAGAACAATAGCTTCACTTTATGTCATATATTGAGAATTTGCAAGCTGAATATTGTAGAATTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAAGCCGGTCCAGTATTGAGTAATATCTATGGTGCGGATTGGGAAAATAGACTAGAGGCAAAGGAGTTGCAGGCTAACTTTGTGCATTTGAGCCTCTTAAGCAAGTACTATAAGCGTGTCTACCAAGAATTCTTCTCCACCAGTGATGCTAATGTTGACAAGCAGTCAGCTAAATCCTGCCATACTGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACCTGCACCAATGGTTTGGTTTCCATTTTGGCTATATTAATTCTTCATGTTCCTGTTCGTTTCAGAAACTTCAACATTCTTGACTCTGAACGCTTCGTTAAGAAAGGAGGAAAAGGAGTGGACCTTCATAGATCACTTTGTAATGTCTATGACACCTCGGAGGAAGAACTGAGGGAAGTAATGGAGAAGGCAAATAGTTTGATAGAAGACATTTTGAAGAAGAAGCCTTGTTTGGCTTCTGAGTGTAACAGTAAAAGCTTGGAGAATATCGACACTGAGGGTTTGATATACTTTGAAGACTTAATGGAGGAGTCATCTCTTTCATCCAGTTTAGAAATTCTAGAAAAGGACTATGAAGATGCAATTCGTAATAAAGGTGAGCTTGATGAGCGGGTGTTTGTTAATGACGAAGATAGTTTACTTGGGTCAGGCAGCTTGTCAGCAGGTGCTGTTACAATGAGTGGCATCAAGAGGAAGTTTGACTCAATGGGCTCACCTGCAAGGATGATAACTAGTCCAATGTCTCCACTTCGCTCTCCTAAACATGTTAATGGCACTCTTAATAGTGGCAATGCAAAACTTGCTGCCACACCTGTTAGCACAGCTATGACTACAGCAAAATGGCTCAGAACTGTTATTTCTCCACTTCCAGCAAGACCTTCACCAGAGATGGAGCGCTTTTTGGCTTCATGTGATAGAGATGTAACTAATGATGTAGTTCGCAGGGCACATATAATATTAGAGGCTATATTTCCAAATAGTGCTCTAGGAGAGCGTTGTATACCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATTTGGGCAGAACAGCGACGACTAGAAGCACTGAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTGACTAATGAGAGGTTCCACAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCCACACATAAAACTGTTACAATGTTGTTTCCTGCAGTATTGGAGAGAACTGGCATTACAGCTTTTGATCTTAGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCGTTGGAAGAACGGCTATTAGAGAGCATGGTATGGGAAAAAGGTTCGTCAATGTATAACTCCCTGATTGTTGCTAAACCTTCCCTTGCTGCTGAAATAAACCGTATGGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCGATTGCTGTTCAAATTAACTTTTCTGGTAGTGGGGTATCAACCATGCTGATTCCGCAAAAGCATGAGAGTTTGCCAGGTCAGAATGGGGATATTAGGTCACCAAAAAGATCGTGCACAGACTTAAGAAGTGTTCTAGTGGAACGGAATTCCTTTACTTCTCCAGTGAAGGACCGTCTCCTGGCGTTCAGTAATATTAAGTCTAAGCTTCTACCTCCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCTGGAGGAGGTGGCGAAACGTGTGCTGAAACTGGAATTAGCATATTTTTTAGCAAGATCGTCAAGTTGGCTGCTGTTAGAGTAAATGGTATGGTGGAAAGGTTGCAGTTATCTCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACAGATACTCAGTCAAAAGGCATCATTATTATTTAATCGTCACATTGACCAGATCATCCTTTGTTGTTTCTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATTTACAACTACAGGAAGCAACCACAATGCAAGCCACAGGTCTTTCGCAACGTGTTTGTCGATTGGTCTTCAGCACGTCGTAATGGGAGATCTGGACAGGATCATGTGGATATAATTACGTTCTACAATGAAATATTTATTCCGTCTGTAAAACCTTTGCTTGTTGAGATTGGCCCAGCTGTTTCAACCATGAAAACCGACAGAGTTCCTCAAGTTATCAATAATAGTGATGCACCTTGTCCTGGATCACCTAAGATATCTCCTTTTCCAAGTCTTCCCGATATGTCTCCAAAGAAAGTATCTTCTGCACATAATGTCTATGTCTCTCCGTTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCTAAAAGCTACTACGCTTGCGTGGGAGAAAGCACTCATGCGTTTCAAAGCCCTTCAAAAGACCTCACCGCCATAAACAACCGTTTGAATGGTTTGAATGGAACACGGAAACTCCGAGGCACGTTAAATTTTGACGACGCAGACGTTGGTTTGGTCAGTGATTCTCTGGTGGCTAACAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCTTCAGGTGCACCAATTAAATCTGAACAACCTGATTCTTAG 3153 41.58 MLKGFPGRRSDSFLKPLASSFARVVLTENMEETKPSATNNCHTDGEPDTVEVQFTELCQNGLHLDESCCNQALKLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYSVKRLRDKDPESSHSGPENNSFTLCHILRICKLNIVEFFKELPQFVVKAGPVLSNIYGADWENRLEAKELQANFVHLSLLSKYYKRVYQEFFSTSDANVDKQSAKSCHTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFNILDSERFVKKGGKGVDLHRSLCNVYDTSEEELREVMEKANSLIEDILKKKPCLASECNSKSLENIDTEGLIYFEDLMEESSLSSSLEILEKDYEDAIRNKGELDERVFVNDEDSLLGSGSLSAGAVTMSGIKRKFDSMGSPARMITSPMSPLRSPKHVNGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPARPSPEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIPGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPSLAAEINRMGLLAEPMPSLDAIAVQINFSGSGVSTMLIPQKHESLPGQNGDIRSPKRSCTDLRSVLVERNSFTSPVKDRLLAFSNIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGISIFFSKIVKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKASLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAVSTMKTDRVPQVINNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9847457 9855047 + CmoCh18G008520.1 Cmo18g00852 402625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00852 1050 Gene3D - 223 381 - -
Cmo18g00852 1050 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 30 1036 IPR028309 GO:0006357|GO:0051726
Cmo18g00852 1050 SUPERFAMILY Cyclin-like 451 646 IPR036915 -
Cmo18g00852 1050 Coils Coil 296 320 - -
Cmo18g00852 1050 Gene3D - 446 634 - -
Cmo18g00852 1050 PANTHER BNACNNG22930D PROTEIN 30 1036 - -
Cmo18g00852 1050 SUPERFAMILY Cyclin-like 766 935 IPR036915 -
Cmo18g00852 1050 Pfam Retinoblastoma-associated protein B domain 768 895 IPR002719 GO:0005634|GO:0051726
Cmo18g00852 1050 SMART DUF3452_2 113 262 IPR024599 -
Cmo18g00852 1050 Pfam Domain of unknown function (DUF3452) 126 262 IPR024599 -
Cmo18g00852 1050 Coils Coil 357 377 - -
Cmo18g00852 1050 Gene3D - 730 920 - -
Cmo18g00852 1050 SMART RB_A_2 443 644 IPR002720 GO:0005634|GO:0051726
Cmo18g00852 1050 Pfam Retinoblastoma-associated protein A domain 443 644 IPR002720 GO:0005634|GO:0051726
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00852 Cmo-Chr18:9847457 Cmo04g01387 Cmo-Chr4:7064281 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11522 PF01858 RB_A 4.70E-64 CL0065 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00852 K04681 - csv:101219810 1845.48