Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00853 ATGGATCAGTTTCCCAAAGAACTCGACAGAGAAGTATGCAACATGAACAAGATTGAACGAGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGAAGATGTACAAGACGACTGGGACGATTGGAATGCAGATGAGGAAGAAGGTGAAGAAGGATTTGACTCGAGTTTTCTGTGTTTGTTCTGCACATCGAAGTATAATGACTGCGCCACGCTGCTCAACCACTGCAACTCGGTTCATAATTTTGATTTTCACGGCATTAGGAAGGGTCTGGGTTTAGACTTTTATGGTTCGTTTAAAATTATCAACTACATACGATCTCAGGTAGCAGAAAATAGGTGTTGGAGCTGTGGTTTCTTGTGTCAATCAAGCCAAGATTTACAGAACCATTTGCACAAAACACTCAATCTCAATGAAATCAAGGCTCTTTGGAATGATGATAAATACCTGAAACCCTTCAGTGAAGATGATCCCCTCTTGTACAGTTTTGCAGAAGACGAAGAGGATGATGACATTTCACCTATCACCAACAATCTACAGAGGAATACAGATACCAATGGAGATTGTAGTTCTTCTTCACATGGTTATTTGAATACTCCAATTAACTTAGAGGCCGTGATTGAGAATACCGTGAAAGCCACAGAGACCTTGGAATTGAACGATAAGATGCAGGAAGACGATCGATTAAAAATAACCGGAAGAAATTTTTTTTCGAAGGATATCAAGAATGTAAATGAAAGCTACTTTGGTTCATATAGCTCTTTTGGCATACACAGAGAGATGTTAAGTGACAAGGTCAGAATGGATGCTTATATGCAAGCTATTTTGCAAAACCCCTCTCTCTTCCGCAATGCAGCTGTGATGGATGTGGGCTGTGGAACAGGCATACTTAGTCTCTTTGCTGCAAAAGCGGGTGCATCAAGAGTTATTGCTGTTGAAGCAAGTGAAAAGATGGCAGCAGTGGCTACTCAAATTGCAAAAGATAACGGCCTCTTGCGGAATAGGAAACAGGGTGGGGATTGTGGCATGTCAAGTGGGACTGTTGAAGTCGTTAATGGTATGGTAGAAGAACTTGATAAGAACATAGAGATTCAGCCTCACAGTGTTGACGTATTATTGAGTGAATGGATGGGCTATTGCTTGCTGTATGAGTCAATGCTCAGTTCAGTGCTCTTTGCAAGGGATCGTTGGTTGAAGCCTGGAGGTGCCATCTTACCAGATACTGCCACAATTCTTGTTGCAGGATTTGGAGTTGGTGGAACTAGTCTTCCATTTTGGGAAAATGTGTACGGTTTCAATATGTCTTGTGTAGGGAAGGAACTTGTAGAGGATGCTGCCAAAGGTCCCATCGTTGACACTGTGGAGGCTAACGATTTAGTTACTAGTGCAGCAATACTTCATACTTTTGATCTAGCAACTATGCATGCTGACGAAGTAGACTTCACTGCAAGTACTGAGTTGGAACCAAATTTGCATAAGCCTTCAAGCAAATCAGAAAACGGTGAAATTGAAACATCTTGGTGTCATGGAGTTGTCTTATGGTTTGAAACTGGTTTTACAAGCAGATTTTGCAAAGAATCACCGGCTGTTCTATCTACATCCCCATACACTCCCAAAACTCACTGGTCTCAAACCATATTAACCTTCAGAGAACCAATTGCTATAACATCAAGCAAATCTGCCACCAACAAATCAGCAACAGTGGGCAGCCTTGCCTCCCCTGCTATCAAAGTTCATTTGCGCCTTAGCATTGTCCGTGCGCCCAAACATCGAAGCATTGACATTTCACTCGAGACTACTGGGATTGCGGGTGATGGTAGGAAGCACCACTGGCCCGTACAACTTTTCACACTAAGATAA 1860 42.53 MDQFPKELDREVCNMNKIEREEEEEEEEEEEEEDVQDDWDDWNADEEEGEEGFDSSFLCLFCTSKYNDCATLLNHCNSVHNFDFHGIRKGLGLDFYGSFKIINYIRSQVAENRCWSCGFLCQSSQDLQNHLHKTLNLNEIKALWNDDKYLKPFSEDDPLLYSFAEDEEDDDISPITNNLQRNTDTNGDCSSSSHGYLNTPINLEAVIENTVKATETLELNDKMQEDDRLKITGRNFFSKDIKNVNESYFGSYSSFGIHREMLSDKVRMDAYMQAILQNPSLFRNAAVMDVGCGTGILSLFAAKAGASRVIAVEASEKMAAVATQIAKDNGLLRNRKQGGDCGMSSGTVEVVNGMVEELDKNIEIQPHSVDVLLSEWMGYCLLYESMLSSVLFARDRWLKPGGAILPDTATILVAGFGVGGTSLPFWENVYGFNMSCVGKELVEDAAKGPIVDTVEANDLVTSAAILHTFDLATMHADEVDFTASTELEPNLHKPSSKSENGEIETSWCHGVVLWFETGFTSRFCKESPAVLSTSPYTPKTHWSQTILTFREPIAITSSKSATNKSATVGSLASPAIKVHLRLSIVRAPKHRSIDISLETTGIAGDGRKHHWPVQLFTLR 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9855731 9859687 - CmoCh18G008530.1 Cmo18g00853 402626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00853 619 MobiDBLite consensus disorder prediction 1 47 - -
Cmo18g00853 619 ProSitePatterns Zinc finger C2H2 type domain signature. 59 80 IPR013087 -
Cmo18g00853 619 Coils Coil 8 38 - -
Cmo18g00853 619 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 251 558 IPR029063 -
Cmo18g00853 619 MobiDBLite consensus disorder prediction 172 191 - -
Cmo18g00853 619 MobiDBLite consensus disorder prediction 175 191 - -
Cmo18g00853 619 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 3-RELATED 27 617 - -
Cmo18g00853 619 Pfam Methyltransferase domain 287 402 IPR041698 -
Cmo18g00853 619 Gene3D Vaccinia Virus protein VP39 236 406 IPR029063 -
Cmo18g00853 619 MobiDBLite consensus disorder prediction 1 19 - -
Cmo18g00853 619 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 27 617 IPR025799 GO:0016274|GO:0018216
Cmo18g00853 619 Gene3D - 409 610 - -
Cmo18g00853 619 MobiDBLite consensus disorder prediction 20 47 - -
Cmo18g00853 619 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 245 598 IPR025799 GO:0016274|GO:0018216
Cmo18g00853 619 CDD AdoMet_MTases 287 405 - -
Cmo18g00853 619 Pfam C2H2 type zinc-finger (2 copies) 59 133 IPR041661 -
Cmo18g00853 619 SUPERFAMILY beta-beta-alpha zinc fingers 37 171 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00729 Cmo-Chr10:3335194 Cmo18g00853 Cmo-Chr18:9855731 1.09E-56 dispersed
Cmo11g00689 Cmo-Chr11:3314381 Cmo18g00853 Cmo-Chr18:9855731 1.42E-63 dispersed
Cmo15g00826 Cmo-Chr15:4134855 Cmo18g00853 Cmo-Chr18:9855731 5.96E-16 dispersed
Cmo15g01183 Cmo-Chr15:8214504 Cmo18g00853 Cmo-Chr18:9855731 4.17E-08 dispersed
Cmo17g00312 Cmo-Chr17:1893557 Cmo18g00853 Cmo-Chr18:9855731 2.20E-36 dispersed
Cmo18g00853 Cmo-Chr18:9855731 Cmo04g01389 Cmo-Chr4:7071918 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00853 K11436 - csv:101215999 947.962