Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00857 ATGCCGGGTGGGCGGCTCTCGGTTTTTGAGCGTGTTCGGAGATTAGGCGGCAGTTTCAAGACTCGAAAGCTTGACGAACAAGCAAATCAAGCCCTAACTGTTTCTTTGAGGATATCCATTTGTGACCAATTTATTACAGAGAACCTCGAAGTATATGCCATGGCTGATGGCAGTCCAGGGACCGACATCTCTACAGACGTCGACACAGATGACAAAAACCAGAGGCTTGATATGGTTCTGCTTAATGCTGCTGTGGCTTCTGATTCAAGTGATAGAACAAAAGACAAGTCTGATCAGAAGACTCTACGTAGGCTTGCACAGAATCGTGAAGCTGCCCGAAAAAGTCGACTGCGAAAAAAGGCATATGTTCAACAGCTCGAGAGTAGTCGTTTAAAGTTGACCCAACTCGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATCTTCATATCAAGCTCTGGAGATCAGGCTCATTCAATGGCTGGAAATGGAGCCATGGCGTTCGATGTGGAATACGCCCGTTGGTTGGAAGACCAAAACAAGCAGATCAATGAATTGAGAGCAGCCGTAAACTCTCATGCAAGCGATACCGAACTTCGAATGGTTGTCGATGGCATCTTGCTTCACTACGACGAGTTTTTTCAGTTAAAAAGCGTCGCTGCAAAGGCTGATGTTTTTCACTTATTGTCGGGCATGTGGAAAACACCAGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCAGAGCTCCTAAAGCTTCTTGTAAATCAATTAGAGCCGCTCACAGAACAGCAATTGTTGGGCATATCAAACTTGCAGCAGTCTTCACAACAAACTGAAGATGCATTGTCACAAGGCATGGAAGCGTTGCAGCAATCATTGGCTGAGACATTGTCCAGTGGATCACTTGGCTCTTCGAATGCGTCTGGCAATGTGGCTAACTACATGGGCCAAATGGCCACGGCCATGGGGAAACTTGGGACTCTTGAGGGGTTTATTCTCCAGGCTGACAATCTACGACAACAGACACTGCAACAAATGCACCGGATATTGACAACTCGTCAATCAGCTCGTGCTCTTCTTGCAATCCATGATTACTTCTCTAGACTACGAGCCCTTAGTTCCCTGTGGCTAGCTCGTCCAAAAGAACGTAATGAAAGCTTGGTAAAAAAGGGAGTTATAACTGACATGCACCCACCGACAACACGTCCGAAATGCTATCAAGGACCTAAGGCACATTGTATTGAACAGATTCACATCCTTAAAAAGCATGGTCTGCTTTCCATTTCAGCAGAAACTGGCAGGGAAGTTAAACTCTATAATGACAATTAG 1338 46.11 MPGGRLSVFERVRRLGGSFKTRKLDEQANQALTVSLRISICDQFITENLEVYAMADGSPGTDISTDVDTDDKNQRLDMVLLNAAVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMAGNGAMAFDVEYARWLEDQNKQINELRAAVNSHASDTELRMVVDGILLHYDEFFQLKSVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLLGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNASGNVANYMGQMATAMGKLGTLEGFILQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKERNESLVKKGVITDMHPPTTRPKCYQGPKAHCIEQIHILKKHGLLSISAETGREVKLYNDN 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9890829 9898701 - CmoCh18G008570.1 Cmo18g00857 402630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00857 445 Gene3D - 99 151 - -
Cmo18g00857 445 SUPERFAMILY Leucine zipper domain 100 143 IPR046347 GO:0003700|GO:0006355
Cmo18g00857 445 Pfam Seed dormancy control 182 257 IPR025422 GO:0006351|GO:0043565
Cmo18g00857 445 SMART brlzneu 96 159 IPR004827 GO:0003700|GO:0006355
Cmo18g00857 445 PANTHER TRANSCRIPTION FACTOR TGA9 42 385 - -
Cmo18g00857 445 Pfam Basic region leucine zipper 96 142 IPR004827 GO:0003700|GO:0006355
Cmo18g00857 445 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 98 142 IPR004827 GO:0003700|GO:0006355
Cmo18g00857 445 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 42 385 - -
Cmo18g00857 445 Coils Coil 119 146 - -
Cmo18g00857 445 ProSiteProfiles DOG1 domain profile. 165 382 IPR025422 GO:0006351|GO:0043565
Cmo18g00857 445 Coils Coil 176 196 - -
Cmo18g00857 445 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 103 118 IPR004827 GO:0003700|GO:0006355
Cmo18g00857 445 CDD bZIP_HBP1b-like 100 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00015 Cmo-Chr6:104664 Cmo18g00857 Cmo-Chr18:9890829 1.87E-47 dispersed
Cmo06g00021 Cmo-Chr6:139954 Cmo18g00857 Cmo-Chr18:9890829 0 dispersed
Cmo06g00079 Cmo-Chr6:475401 Cmo18g00857 Cmo-Chr18:9890829 3.60E-123 dispersed
Cmo14g00514 Cmo-Chr14:2538400 Cmo18g00857 Cmo-Chr18:9890829 1.74E-180 dispersed
Cmo15g00946 Cmo-Chr15:4867276 Cmo18g00857 Cmo-Chr18:9890829 8.52E-161 dispersed
Cmo12g00101 Cmo-Chr12:546760 Cmo18g00857 Cmo-Chr18:9890829 7.84E-164 transposed
Cmo18g00857 Cmo-Chr18:9890829 Cmo04g01393 Cmo-Chr4:7083472 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11523 PF14144 DOG1 6.90E-32 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00857 K14431 - csv:101216885 563.918