Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00857 | ATGCCGGGTGGGCGGCTCTCGGTTTTTGAGCGTGTTCGGAGATTAGGCGGCAGTTTCAAGACTCGAAAGCTTGACGAACAAGCAAATCAAGCCCTAACTGTTTCTTTGAGGATATCCATTTGTGACCAATTTATTACAGAGAACCTCGAAGTATATGCCATGGCTGATGGCAGTCCAGGGACCGACATCTCTACAGACGTCGACACAGATGACAAAAACCAGAGGCTTGATATGGTTCTGCTTAATGCTGCTGTGGCTTCTGATTCAAGTGATAGAACAAAAGACAAGTCTGATCAGAAGACTCTACGTAGGCTTGCACAGAATCGTGAAGCTGCCCGAAAAAGTCGACTGCGAAAAAAGGCATATGTTCAACAGCTCGAGAGTAGTCGTTTAAAGTTGACCCAACTCGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATCTTCATATCAAGCTCTGGAGATCAGGCTCATTCAATGGCTGGAAATGGAGCCATGGCGTTCGATGTGGAATACGCCCGTTGGTTGGAAGACCAAAACAAGCAGATCAATGAATTGAGAGCAGCCGTAAACTCTCATGCAAGCGATACCGAACTTCGAATGGTTGTCGATGGCATCTTGCTTCACTACGACGAGTTTTTTCAGTTAAAAAGCGTCGCTGCAAAGGCTGATGTTTTTCACTTATTGTCGGGCATGTGGAAAACACCAGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCAGAGCTCCTAAAGCTTCTTGTAAATCAATTAGAGCCGCTCACAGAACAGCAATTGTTGGGCATATCAAACTTGCAGCAGTCTTCACAACAAACTGAAGATGCATTGTCACAAGGCATGGAAGCGTTGCAGCAATCATTGGCTGAGACATTGTCCAGTGGATCACTTGGCTCTTCGAATGCGTCTGGCAATGTGGCTAACTACATGGGCCAAATGGCCACGGCCATGGGGAAACTTGGGACTCTTGAGGGGTTTATTCTCCAGGCTGACAATCTACGACAACAGACACTGCAACAAATGCACCGGATATTGACAACTCGTCAATCAGCTCGTGCTCTTCTTGCAATCCATGATTACTTCTCTAGACTACGAGCCCTTAGTTCCCTGTGGCTAGCTCGTCCAAAAGAACGTAATGAAAGCTTGGTAAAAAAGGGAGTTATAACTGACATGCACCCACCGACAACACGTCCGAAATGCTATCAAGGACCTAAGGCACATTGTATTGAACAGATTCACATCCTTAAAAAGCATGGTCTGCTTTCCATTTCAGCAGAAACTGGCAGGGAAGTTAAACTCTATAATGACAATTAG | 1338 | 46.11 | MPGGRLSVFERVRRLGGSFKTRKLDEQANQALTVSLRISICDQFITENLEVYAMADGSPGTDISTDVDTDDKNQRLDMVLLNAAVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMAGNGAMAFDVEYARWLEDQNKQINELRAAVNSHASDTELRMVVDGILLHYDEFFQLKSVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLLGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNASGNVANYMGQMATAMGKLGTLEGFILQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKERNESLVKKGVITDMHPPTTRPKCYQGPKAHCIEQIHILKKHGLLSISAETGREVKLYNDN | 445 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 9890829 | 9898701 | - | CmoCh18G008570.1 | Cmo18g00857 | 402630 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00857 | 445 | Gene3D | - | 99 | 151 | - | - | |
Cmo18g00857 | 445 | SUPERFAMILY | Leucine zipper domain | 100 | 143 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo18g00857 | 445 | Pfam | Seed dormancy control | 182 | 257 | IPR025422 | GO:0006351|GO:0043565 | |
Cmo18g00857 | 445 | SMART | brlzneu | 96 | 159 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo18g00857 | 445 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 42 | 385 | - | - | |
Cmo18g00857 | 445 | Pfam | Basic region leucine zipper | 96 | 142 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo18g00857 | 445 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 98 | 142 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo18g00857 | 445 | PANTHER | TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 | 42 | 385 | - | - | |
Cmo18g00857 | 445 | Coils | Coil | 119 | 146 | - | - | |
Cmo18g00857 | 445 | ProSiteProfiles | DOG1 domain profile. | 165 | 382 | IPR025422 | GO:0006351|GO:0043565 | |
Cmo18g00857 | 445 | Coils | Coil | 176 | 196 | - | - | |
Cmo18g00857 | 445 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 103 | 118 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo18g00857 | 445 | CDD | bZIP_HBP1b-like | 100 | 152 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00015 | Cmo-Chr6:104664 | Cmo18g00857 | Cmo-Chr18:9890829 | 1.87E-47 | dispersed | |
Cmo06g00021 | Cmo-Chr6:139954 | Cmo18g00857 | Cmo-Chr18:9890829 | 0 | dispersed | |
Cmo06g00079 | Cmo-Chr6:475401 | Cmo18g00857 | Cmo-Chr18:9890829 | 3.60E-123 | dispersed | |
Cmo14g00514 | Cmo-Chr14:2538400 | Cmo18g00857 | Cmo-Chr18:9890829 | 1.74E-180 | dispersed | |
Cmo15g00946 | Cmo-Chr15:4867276 | Cmo18g00857 | Cmo-Chr18:9890829 | 8.52E-161 | dispersed | |
Cmo12g00101 | Cmo-Chr12:546760 | Cmo18g00857 | Cmo-Chr18:9890829 | 7.84E-164 | transposed | |
Cmo18g00857 | Cmo-Chr18:9890829 | Cmo04g01393 | Cmo-Chr4:7083472 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11523 | PF14144 | DOG1 | 6.90E-32 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00857 | K14431 | - | csv:101216885 | 563.918 |