Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00872 ATGTCGTTGAAGTTGCACCATATTGATCTAAAGGGTGGTTCAGGTACCCAGAAAAGGCTGAATGATATCTCAGCTCAGTCCACAAATAAGTACTGTGCAGATTGTGGATCTCCAGACCCAAAATGGGTATCGTTGAGTTTTGGGGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGGAGCCTTGGAGTGCACATATCCAAGGTTCTTTCAGTGAAGTTAGATGATTGGACTGATGAACAAGTTGAGGCTTTGATGAGTGCTGGTGGAAATACTGCTGTAAACAAGAAGTATGAAGTTTACATCCCAAAAGGCAACAGAAAACCTAAGCCAGATTCCTCCATAGAGGATCGTCTAGATTTTATAAGGAAAAAATATCAGCTGCTGCAATTTGCAAGCTTTGATGACCAGTTTTTCTGTGCTTTTCCACCCCCGGAGAAGAGAACTTCTAAGGACAATGGAAACCAAGAAAAGCGAAATTATGATAAACAACCAACAAAAAGTCGAATTGGAAATGCATTCCGGAATAGCTGGGGAAGAAAAGATTCTGAACGTAGGAGCTGCAAGAAGGGAAATTCATTGGTGTTAAGCAATTCAATGGCAGGTATGGTTGAATTCGTTGGTTTAGTTAAGGTGAACGTGGTTAGAGGAACCAATTTAGCTGTGAGGGACGTCATCACGAGCGATCCGTATGTAATTCTCTCGTTGGGGAATCAATCAGTGAAGACTCGTGTTATAAAGAGCAGTTTGAACCCAGTCTGGAATGAAAGCCTAATGTTGTCTATTCCAGATTTCGTTCCTCCATTAAGGGTGCTTGTATATGACAAAGATACGTTTTCAACCGATGATTTCATGGGTGAAGCAGAAATTGATATCCATCCGCTGCTCTCCGCAGCCCAAGCTTGTGAGAAGTCCACAGCCTGTGAACCCATGCAGCTAGCAAATTGGGTTGCAGGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTGGATGGGAAGCCACGACAAGACGTCTCCTTGAAGCTGCAGAACGTCGAGAGGGGCGTGCTGGATATGGAGCTTGAATGTGTTCCCCTTTCTCAGTAG 1095 43.93 MSLKLHHIDLKGGSGTQKRLNDISAQSTNKYCADCGSPDPKWVSLSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVEALMSAGGNTAVNKKYEVYIPKGNRKPKPDSSIEDRLDFIRKKYQLLQFASFDDQFFCAFPPPEKRTSKDNGNQEKRNYDKQPTKSRIGNAFRNSWGRKDSERRSCKKGNSLVLSNSMAGMVEFVGLVKVNVVRGTNLAVRDVITSDPYVILSLGNQSVKTRVIKSSLNPVWNESLMLSIPDFVPPLRVLVYDKDTFSTDDFMGEAEIDIHPLLSAAQACEKSTACEPMQLANWVAGKENTLAKDGIISLVDGKPRQDVSLKLQNVERGVLDMELECVPLSQ 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10020555 10024612 + CmoCh18G008720.1 Cmo18g00872 402645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00872 364 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 205 300 IPR035892 -
Cmo18g00872 364 CDD ArfGap 20 126 - -
Cmo18g00872 364 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Cmo18g00872 364 MobiDBLite consensus disorder prediction 150 165 - -
Cmo18g00872 364 SMART C2_3c 209 304 IPR000008 -
Cmo18g00872 364 Gene3D Arf GTPase activating protein 6 138 IPR038508 -
Cmo18g00872 364 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Cmo18g00872 364 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Cmo18g00872 364 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Cmo18g00872 364 SMART arf_gap_3 17 139 IPR001164 GO:0005096
Cmo18g00872 364 Pfam C2 domain 209 301 IPR000008 -
Cmo18g00872 364 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 8 364 - -
Cmo18g00872 364 Pfam Putative GTPase activating protein for Arf 18 132 IPR001164 GO:0005096
Cmo18g00872 364 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 131 IPR001164 GO:0005096
Cmo18g00872 364 Gene3D C2 domain 207 361 IPR035892 -
Cmo18g00872 364 MobiDBLite consensus disorder prediction 145 185 - -
Cmo18g00872 364 ProSiteProfiles C2 domain profile. 190 306 IPR000008 -
Cmo18g00872 364 CDD C2_ArfGAP 207 351 - -
Cmo18g00872 364 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 8 364 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01412 Cmo-Chr4:7187078 Cmo18g00872 Cmo-Chr18:10020555 0 dispersed
Cmo15g00846 Cmo-Chr15:4284174 Cmo18g00872 Cmo-Chr18:10020555 6.49E-169 dispersed
Cmo18g00486 Cmo-Chr18:3337349 Cmo18g00872 Cmo-Chr18:10020555 5.84E-104 dispersed
Cmo18g00872 Cmo-Chr18:10020555 Cmo11g00319 Cmo-Chr11:1548827 1.70E-37 dispersed
Cmo18g00872 Cmo-Chr18:10020555 Cmo04g02315 Cmo-Chr4:17213598 3.64E-172 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00872 K12486 - csv:101221541 639.802