Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00884 ATGGCAGGAATGTTTAACGGGGAGGGGTCGTCGTCAGTAACTTCATCGCCGTTGCAGCTCTTTCCGTGGTCGTTATCGCCTGGTATAGGATCGCCATACCCTTTTCTAAGGGAGCTCAAATCTGAAGAGAGGGGCTTATGTCTGATTCACCTCCTTCTTGCCTGTGCCAACCAAGTTGCCATTGGTAACATCGAAAATGCCAACGTTGGCCTCGAGCAAATTTCCCACCTAGCTTCGCCCGACGGGGACACAATGCAGCGGATTGCTGCCTACTTCACCGAGGCACTCGCCGATCGGATACTCAAGTCATGGCCAGGCTTACACAAAGCCTTGAACTCGACCAAAATATTGTCGGTCCCGGAAGAGATTCTCGCTCAGAGATTGTTCTTTGAGCTATGTCCTTTCTTGAAGCTTGCATATGTGATAACTAATCAGGCTATCATAGAAGCTATGGAGGGAGAAAGGATGATTCATATTATTGATTTCAAATCATGTGAGCCTGCTCAATGGATAAACCTTCTTCAGACATTGAAAGACCGACCAGACGGTCCGCCCCACGTGAGAATAACCGGAATTCACGAACAGAAGGAGGTGTTGGAACAAATGGCTGTTCGGCTAACCGAAGAGGCCGAAAAATGGGACATACCATTTCAGTTCACCCCAGTTGTTAGCAAGTTAGAGAATCTCGACCTTGAAAGTTTAAGGGTGAAGACAGGAGAAGCACTCGCAGTGAGCTCAGTACTCGAACTTCACACGATTTTAGCCACGGACGACGATAAGACAAAAACATCGCCATCTGCATCGAAGAACTTGCAAAAGCTCCTACGTATGAAGCAGCGAACACTCGGAGAGTGGCTGGAAACAGATTCGTTGCAAGTTTTTAGTAGTAGCCCGGATTCAGCGTCGGTATGTTCGCCATCAGGATTGAATCCTTCACAAAAGATGAATAGTTTTTTGAATGCACTGTGGGGGCTATCTCCAAAAGTGATGGTAATAACAGAGCAAGAATCAAACCTGAATGGATCAGGGTTGATGGAGAGAGTACTAGAAGCACTAAACTTCTATGCTGCATTGTTTGATTGCTTGGAATCAACGGTGTCGAGGTCGTCGATCGAGCGACAAAGGGTGGAGAAGATGCTTTTAGGAGAGGAAATAAAGAACATCATTGCTTGCGAGGGAGCGGAGAGAAGGGAGAGACACGAAAAGCTCGAGAAATGGATAGTACGATTCGAAAGCGTGGGGTTTGGGAGGGTTGGATTGAGTTATAATAGTATGTTTCTGGGGAATAGATTGTTGCAGAGCAATGGATATGATGGATATAAAATCAAAGAAGAGAATGGATTTTTGTTCATTTGTTGGCAAGATAGGCCACTTTTTTCTGTATCAGCCTGGGGGTTTCAAAGGCAAAGCTGA 1413 46.07 MAGMFNGEGSSSVTSSPLQLFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLACANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVITNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHVRITGIHEQKEVLEQMAVRLTEEAEKWDIPFQFTPVVSKLENLDLESLRVKTGEALAVSSVLELHTILATDDDKTKTSPSASKNLQKLLRMKQRTLGEWLETDSLQVFSSSPDSASVCSPSGLNPSQKMNSFLNALWGLSPKVMVITEQESNLNGSGLMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGAERRERHEKLEKWIVRFESVGFGRVGLSYNSMFLGNRLLQSNGYDGYKIKEENGFLFICWQDRPLFSVSAWGFQRQS 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10104659 10106071 - CmoCh18G008840.1 Cmo18g00884 402657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00884 470 Pfam GRAS domain family 48 464 IPR005202 -
Cmo18g00884 470 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 4 466 - -
Cmo18g00884 470 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 466 IPR005202 -
Cmo18g00884 470 ProSiteProfiles GRAS family profile. 39 465 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00876 Cmo-Chr11:4488666 Cmo18g00884 Cmo-Chr18:10104659 0 dispersed
Cmo18g00884 Cmo-Chr18:10104659 Cmo04g03104 Cmo-Chr4:21588625 6.07E-74 dispersed
Cmo18g00884 Cmo-Chr18:10104659 Cmo15g00767 Cmo-Chr15:3765077 4.54E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11528 PF03514 GRAS 4.60E-135 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00884 - - cmo:103489486 879.782