Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00887 ATGGGGAAGAAAGGGGGTTGGTTTGCTGCAGTGAGGAAGGTTCTCAGTAACAAGATACAAGAAAGATCCAAGAAAAAATGGTTCCAAAGGGAGGAGAGTGTGGACACATTTGTGGAACCATCCCTGTTAGATGTTCCCGCAGAACCTTCTCCTATGGAAGATGATATCAATCAAACTAAGCCGGAGGATGAACCGAGCGAGCTTCCGCATTCCGAGGCGGTGGAGCCTGCTGTTGATGAAGCTCAGCTGGCTGTGGAGGATGAACATCTACCCAGTATTATACCCTGTAAGCCAGAAATGACTGAGGAAACAGGAGCTATTATTATTCAATCAGCCTTTCGTGGATATAAGGCGAGGAAAGTATCAAGGGGTCTCAAAGCGATAATGAGATTGAGGTCGTTGGTACAAGGCCACTCTGTGAAACGGCAGGTGGCCTCTACTTTAAAAAGTATGCAAACTCTTGCACATGTACAGTCAGAGGTTCGTGCAAGGAGAGTAAGAATGTCGGAAGAAAATCAGGATTTCCAGCGGCAACTTTGTAACAAACGTGAGAAAGATCATGAGAAGTTCAAAACTTCTATGGATGATGTCTGGAATCCTAGCACCCATTCTAAAGCACAAATGGAAGCCAAACTATTGAACAGGCAAGAGGCCGCAACAAGAAGAGAACGAGCTTTGGCTTATGCTCACTCGCATCAGCGAACATGGAAGAGTTCTTCAAAAACTACAACCCATTCTGTCATGGATTCAAACAATCCCTACTGGGGCTGGAGTTGGTTGGAGAGATGGATGGCAGCTCGCCCATGGGAACTCCAAAGCACAGCCGATCACCCAGATCACAATTCTGTCACAAACGTCCCAACTCATGCATCTACAATCGACATAATCCAAGTTTATGCTCGTCGCGATCCGAACTCCCATACGAAGCCTTCTCCAAGGACTCCTACTAGCCAAAAGGCAAGCCAAGTGCATAGGCATCAGTCACCTTCCATTCCTAGAGCATTATCTTCATCATCTAGCAAAAAGAAAACAAATGCAGCCAACTTAAAGGTAGGCAGCTGGAGTGGGGATGATGACATGAGAAGCCCCGTGAGTGTCAACTCAAAGCTCACCCGGAGGCATAGTATAGGAGGGTCATCATTCAGGGATGACATAAGCATTGCCAGTTTACCTTCAGTTTCGAGTTACACGCCAACGTCGAAGACGGCTGCTAAGGCTCGGTCCCGGTTGGCAAGTCCATCTGTGACACTGAAGAAAGAGGCAATGGAAAAAGGATCTGCAAGCACAGGTTCTGCAAAGAAGCGGCTCTCCATTACAGGTCCATTGCTTCGTCATTGCAGTTCCGAGAAAACCGAATCGGGTTCGCCTCTGAATCGAAGGAAGGGATGCGGATTTCTGGATGAAAATTTCACATTCTCTCGTCTGTCACTGGAATTCACTCAAATGGCTACACCATTCCTCGCAGGCCTAGCGGTAGCTGCTGCGGCTCTTGCTGGTAGATATGGAATTCGAGCTTGGCAAGCATTCAAGACACGGCCACCACAAGCCAGATCACGCAAATTCTATGAAGGTGGTTTCAATCCTACAATGACAAAGAGGGAAGCAGCTCTTATTCTTGGTGTTAGAGAAAATACACCTCCAGAAAAGATTAAGGAAGCACATAGAAGGGTAATGATAGCAAACCATCCCGATGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCAAGGATGTCCTGCTCGGAAAATCTGAAGGCAGCCCATCTGCATTTTAA 1782 47.08 MGKKGGWFAAVRKVLSNKIQERSKKKWFQREESVDTFVEPSLLDVPAEPSPMEDDINQTKPEDEPSELPHSEAVEPAVDEAQLAVEDEHLPSIIPCKPEMTEETGAIIIQSAFRGYKARKVSRGLKAIMRLRSLVQGHSVKRQVASTLKSMQTLAHVQSEVRARRVRMSEENQDFQRQLCNKREKDHEKFKTSMDDVWNPSTHSKAQMEAKLLNRQEAATRRERALAYAHSHQRTWKSSSKTTTHSVMDSNNPYWGWSWLERWMAARPWELQSTADHPDHNSVTNVPTHASTIDIIQVYARRDPNSHTKPSPRTPTSQKASQVHRHQSPSIPRALSSSSSKKKTNAANLKVGSWSGDDDMRSPVSVNSKLTRRHSIGGSSFRDDISIASLPSVSSYTPTSKTAAKARSRLASPSVTLKKEAMEKGSASTGSAKKRLSITGPLLRHCSSEKTESGSPLNRRKGCGFLDENFTFSRLSLEFTQMATPFLAGLAVAAAALAGRYGIRAWQAFKTRPPQARSRKFYEGGFNPTMTKREAALILGVRENTPPEKIKEAHRRVMIANHPDAGGSHYLASKINEAKDVLLGKSEGSPSAF 593
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 10128215 10137298 - CmoCh18G008870.1 Cmo18g00887 402660
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00887 593 PANTHER IQ-DOMAIN 5-RELATED 1 443 - -
Cmo18g00887 593 SMART dnaj_3 533 587 IPR001623 -
Cmo18g00887 593 MobiDBLite consensus disorder prediction 392 409 - -
Cmo18g00887 593 ProSiteProfiles dnaJ domain profile. 534 593 IPR001623 -
Cmo18g00887 593 MobiDBLite consensus disorder prediction 39 72 - -
Cmo18g00887 593 MobiDBLite consensus disorder prediction 360 375 - -
Cmo18g00887 593 MobiDBLite consensus disorder prediction 303 378 - -
Cmo18g00887 593 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 443 - -
Cmo18g00887 593 SUPERFAMILY Chaperone J-domain 524 584 IPR036869 -
Cmo18g00887 593 CDD DnaJ 538 582 IPR001623 -
Cmo18g00887 593 MobiDBLite consensus disorder prediction 309 351 - -
Cmo18g00887 593 Gene3D DnaJ domain 520 586 IPR036869 -
Cmo18g00887 593 Pfam IQ calmodulin-binding motif 106 120 IPR000048 GO:0005515
Cmo18g00887 593 ProSiteProfiles IQ motif profile. 102 130 IPR000048 GO:0005515
Cmo18g00887 593 MobiDBLite consensus disorder prediction 55 72 - -
Cmo18g00887 593 MobiDBLite consensus disorder prediction 392 433 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00353 Cmo-Chr6:1719317 Cmo18g00887 Cmo-Chr18:10128215 4.47E-53 dispersed
Cmo15g00445 Cmo-Chr15:2025442 Cmo18g00887 Cmo-Chr18:10128215 8.48E-121 dispersed
Cmo03g01251 Cmo-Chr3:9610366 Cmo18g00887 Cmo-Chr18:10128215 1.15E-54 transposed
Cmo18g00887 Cmo-Chr18:10128215 Cmo04g01429 Cmo-Chr4:7278716 3.49E-159 wgd
Cmo18g00887 Cmo-Chr18:10128215 Cmo04g02721 Cmo-Chr4:19731029 1.04E-123 wgd
Cmo18g00887 Cmo-Chr18:10128215 Cmo07g00981 Cmo-Chr7:4829625 4.08E-64 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00887 - - cmax:111466344 811.216