Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00887 ATGGGGAAGAAAGGGGGTTGGTTTGCTGCAGTGAGGAAGGTTCTCAGTAACAAGATACAAGAAAGATCCAAGAAAAAATGGTTCCAAAGGGAGGAGAGTGTGGACACATTTGTGGAACCATCCCTGTTAGATGTTCCCGCAGAACCTTCTCCTATGGAAGATGATATCAATCAAACTAAGCCGGAGGATGAACCGAGCGAGCTTCCGCATTCCGAGGCGGTGGAGCCTGCTGTTGATGAAGCTCAGCTGGCTGTGGAGGATGAACATCTACCCAGTATTATACCCTGTAAGCCAGAAATGACTGAGGAAACAGGAGCTATTATTATTCAATCAGCCTTTCGTGGATATAAGGCGAGGAAAGTATCAAGGGGTCTCAAAGCGATAATGAGATTGAGGTCGTTGGTACAAGGCCACTCTGTGAAACGGCAGGTGGCCTCTACTTTAAAAAGTATGCAAACTCTTGCACATGTACAGTCAGAGGTTCGTGCAAGGAGAGTAAGAATGTCGGAAGAAAATCAGGATTTCCAGCGGCAACTTTGTAACAAACGTGAGAAAGATCATGAGAAGTTCAAAACTTCTATGGATGATGTCTGGAATCCTAGCACCCATTCTAAAGCACAAATGGAAGCCAAACTATTGAACAGGCAAGAGGCCGCAACAAGAAGAGAACGAGCTTTGGCTTATGCTCACTCGCATCAGCGAACATGGAAGAGTTCTTCAAAAACTACAACCCATTCTGTCATGGATTCAAACAATCCCTACTGGGGCTGGAGTTGGTTGGAGAGATGGATGGCAGCTCGCCCATGGGAACTCCAAAGCACAGCCGATCACCCAGATCACAATTCTGTCACAAACGTCCCAACTCATGCATCTACAATCGACATAATCCAAGTTTATGCTCGTCGCGATCCGAACTCCCATACGAAGCCTTCTCCAAGGACTCCTACTAGCCAAAAGGCAAGCCAAGTGCATAGGCATCAGTCACCTTCCATTCCTAGAGCATTATCTTCATCATCTAGCAAAAAGAAAACAAATGCAGCCAACTTAAAGGTAGGCAGCTGGAGTGGGGATGATGACATGAGAAGCCCCGTGAGTGTCAACTCAAAGCTCACCCGGAGGCATAGTATAGGAGGGTCATCATTCAGGGATGACATAAGCATTGCCAGTTTACCTTCAGTTTCGAGTTACACGCCAACGTCGAAGACGGCTGCTAAGGCTCGGTCCCGGTTGGCAAGTCCATCTGTGACACTGAAGAAAGAGGCAATGGAAAAAGGATCTGCAAGCACAGGTTCTGCAAAGAAGCGGCTCTCCATTACAGGTCCATTGCTTCGTCATTGCAGTTCCGAGAAAACCGAATCGGGTTCGCCTCTGAATCGAAGGAAGGGATGCGGATTTCTGGATGAAAATTTCACATTCTCTCGTCTGTCACTGGAATTCACTCAAATGGCTACACCATTCCTCGCAGGCCTAGCGGTAGCTGCTGCGGCTCTTGCTGGTAGATATGGAATTCGAGCTTGGCAAGCATTCAAGACACGGCCACCACAAGCCAGATCACGCAAATTCTATGAAGGTGGTTTCAATCCTACAATGACAAAGAGGGAAGCAGCTCTTATTCTTGGTGTTAGAGAAAATACACCTCCAGAAAAGATTAAGGAAGCACATAGAAGGGTAATGATAGCAAACCATCCCGATGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCAAGGATGTCCTGCTCGGAAAATCTGAAGGCAGCCCATCTGCATTTTAA 1782 47.08 MGKKGGWFAAVRKVLSNKIQERSKKKWFQREESVDTFVEPSLLDVPAEPSPMEDDINQTKPEDEPSELPHSEAVEPAVDEAQLAVEDEHLPSIIPCKPEMTEETGAIIIQSAFRGYKARKVSRGLKAIMRLRSLVQGHSVKRQVASTLKSMQTLAHVQSEVRARRVRMSEENQDFQRQLCNKREKDHEKFKTSMDDVWNPSTHSKAQMEAKLLNRQEAATRRERALAYAHSHQRTWKSSSKTTTHSVMDSNNPYWGWSWLERWMAARPWELQSTADHPDHNSVTNVPTHASTIDIIQVYARRDPNSHTKPSPRTPTSQKASQVHRHQSPSIPRALSSSSSKKKTNAANLKVGSWSGDDDMRSPVSVNSKLTRRHSIGGSSFRDDISIASLPSVSSYTPTSKTAAKARSRLASPSVTLKKEAMEKGSASTGSAKKRLSITGPLLRHCSSEKTESGSPLNRRKGCGFLDENFTFSRLSLEFTQMATPFLAGLAVAAAALAGRYGIRAWQAFKTRPPQARSRKFYEGGFNPTMTKREAALILGVRENTPPEKIKEAHRRVMIANHPDAGGSHYLASKINEAKDVLLGKSEGSPSAF 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10128215 10137298 - CmoCh18G008870.1 Cmo18g00887 402660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00887 593 PANTHER IQ-DOMAIN 5-RELATED 1 443 - -
Cmo18g00887 593 SMART dnaj_3 533 587 IPR001623 -
Cmo18g00887 593 MobiDBLite consensus disorder prediction 392 409 - -
Cmo18g00887 593 ProSiteProfiles dnaJ domain profile. 534 593 IPR001623 -
Cmo18g00887 593 MobiDBLite consensus disorder prediction 39 72 - -
Cmo18g00887 593 MobiDBLite consensus disorder prediction 360 375 - -
Cmo18g00887 593 MobiDBLite consensus disorder prediction 303 378 - -
Cmo18g00887 593 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 443 - -
Cmo18g00887 593 SUPERFAMILY Chaperone J-domain 524 584 IPR036869 -
Cmo18g00887 593 CDD DnaJ 538 582 IPR001623 -
Cmo18g00887 593 MobiDBLite consensus disorder prediction 309 351 - -
Cmo18g00887 593 Gene3D DnaJ domain 520 586 IPR036869 -
Cmo18g00887 593 Pfam IQ calmodulin-binding motif 106 120 IPR000048 GO:0005515
Cmo18g00887 593 ProSiteProfiles IQ motif profile. 102 130 IPR000048 GO:0005515
Cmo18g00887 593 MobiDBLite consensus disorder prediction 55 72 - -
Cmo18g00887 593 MobiDBLite consensus disorder prediction 392 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00887 - - - cmax:111466344 811.216
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00353 Cmo-Chr6:1719317 Cmo18g00887 Cmo-Chr18:10128215 4.47E-53 dispersed
Cmo15g00445 Cmo-Chr15:2025442 Cmo18g00887 Cmo-Chr18:10128215 8.48E-121 dispersed
Cmo03g01251 Cmo-Chr3:9610366 Cmo18g00887 Cmo-Chr18:10128215 1.15E-54 transposed
Cmo18g00887 Cmo-Chr18:10128215 Cmo04g01429 Cmo-Chr4:7278716 3.49E-159 wgd
Cmo18g00887 Cmo-Chr18:10128215 Cmo04g02721 Cmo-Chr4:19731029 1.04E-123 wgd
Cmo18g00887 Cmo-Chr18:10128215 Cmo07g00981 Cmo-Chr7:4829625 4.08E-64 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g01429 CCT,ECH 99 267 IQD Protein Family AT3G09710 54.7 1.4e-46 184.9
Cmo18g00887 . 102 270 IQD Protein Family AT3G09710 51.4 3.3e-40 163.7
Cmo06g00353 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.1e-62 236.1
Cmo04g02721 CCT,CST,ECH 1 478 IQD Protein Family AT3G52290 54.1 4.1e-98 355.9
Cmo15g00445 CCT,CST,ECH 1 452 IQD Protein Family AT3G52290 50.4 1.7e-88 323.9
Cmo11g00931 CST 1 412 IQD Protein Family AT3G22190 57.2 4.2e-95 345.9
Cmo10g00895 CST 23 388 IQD Protein Family AT3G22190 57.9 8.4e-88 321.6
Cmo01g01783 . 1 434 IQD Protein Family AT2G26180 59.7 6.1e-115 411.8
Cmo09g00343 . 238 629 IQD Protein Family AT2G26180 58.9 2.3e-98 356.7
Cmo07g00202 . 1 279 IQD Protein Family AT2G33990 51.6 6.3e-65 245.0
Cmo16g00447 . 109 292 IQD Protein Family AT2G33990 53.5 8.2e-49 191.4
Cmo07g00202 . 1 253 IQD Protein Family AT3G15050 51.4 7.8e-60 228.0
Cmo16g00447 . 65 285 IQD Protein Family AT3G15050 52.4 1.1e-53 207.6
Cmo15g00857 . 123 458 IQD Protein Family AT5G13460 52.4 1.3e-75 281.2
Cmo06g00970 . 1 500 IQD Protein Family AT4G00820 56.1 1.2e-126 451.1
Cmo06g00970 . 1 500 IQD Protein Family AT1G01110 52.3 1.6e-123 440.7
Cmo08g00706 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.3 3.2e-73 273.1
Cmo11g00664 CST 1 382 IQD Protein Family AT3G16490 51.6 8.9e-68 255.0
Cmo10g00702 CST 1 376 IQD Protein Family AT3G16490 51.5 7.8e-64 241.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012991 0 3 0 0 0 1 2 0 0 1 1 0 2 1 1 2 0 0 2 0 1 1 1 1 1 1 1 2 3 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00887 Cmo_Chr18 FPKM 5.627317 6.863454 5.574194 6.562563 22.484079 24.496489 23.075558 1.141397 0.914441 1.424541