Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00896 ATGGCGAAAGACGACGTGACGGCGCGGGGGTTCTCCGGCAAGGACTACCAGGACCCTCCGCCTGCGCCGCTGATCGACGCGGCGGAGGTAGGGAAGTGGTCCTTTTTCAGAGCCCTGATTGCTGAGTTTGTCGCCACTCTCCTGTTTCTGTATATCACTATCTTGATTATTATTGGCCATAGTAGCCAGTCTGACCCTCACCAACTTGGCGGCAACGCTTGCGGCGGCGTTGGCATCCTCGGTATCGCTTGGGGCTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATTTCAGGCGGGCACATAAACCCGGCGGTGACATTCGGGCTATTCTTAGCCCGAAAGGTGTCGCTGGTTCGAGCAGTGGCGTACATGATAGCTCAGTGCTTGGGAGCCATATGCGGAACGGGGCTGGTGAAAGCCTTACAAAGGGACTACTTCAACAGGTACGGCGGCGGTGCGAACCAGCTCGCCCACGGCTACAGCAAGGGCGCCGGCTTGGGGGCCGAAATCATCGGTACCTTCATCTTGGTCTACACCGTCTTCTCCGCCACCGACGCCAAGAGAAACGCCAGAGACTCCCACGTTCCTATATTGGCTCCGCTCTCGATTGGGTTCGCCGTGTTCATGGTTCACTTAGCCACCATTCCCATTACCGGCACCAGCATCAACCCGGCTAGAAGCTTCGGCCCCGCTGTCATCTTGAACCGGGAAAAACCTTGGGATGATCATTGGATGTTCTGGGTTGGGCCTTTCATCGGAGCCGCCATTGCAGCGCTCTACCACCAGTTCGTTTTGCGGGCCGGCGCGGGTAGGAGCCACCCGTCCGTTTGA 843 58.48 MAKDDVTARGFSGKDYQDPPPAPLIDAAEVGKWSFFRALIAEFVATLLFLYITILIIIGHSSQSDPHQLGGNACGGVGILGIAWGFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMIAQCLGAICGTGLVKALQRDYFNRYGGGANQLAHGYSKGAGLGAEIIGTFILVYTVFSATDAKRNARDSHVPILAPLSIGFAVFMVHLATIPITGTSINPARSFGPAVILNREKPWDDHWMFWVGPFIGAAIAALYHQFVLRAGAGRSHPSV 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10199572 10202187 - CmoCh18G008960.1 Cmo18g00896 402669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00896 280 Pfam Major intrinsic protein 31 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00896 280 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00896 280 PRINTS Major intrinsic protein family signature 208 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00896 280 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00896 280 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00896 280 PRINTS Major intrinsic protein family signature 172 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00896 280 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00896 280 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Cmo18g00896 280 PANTHER AQUAPORIN PIP2-4-RELATED 9 275 - -
Cmo18g00896 280 Gene3D Glycerol uptake facilitator protein. 22 278 IPR023271 -
Cmo18g00896 280 CDD MIP 37 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00896 280 TIGRFAM MIP: MIP family channel proteins 41 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00896 280 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Cmo18g00896 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 275 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00973 Cmo-Chr7:4770232 Cmo18g00896 Cmo-Chr18:10199572 4.40E-154 dispersed
Cmo18g00896 Cmo-Chr18:10199572 Cmo02g00893 Cmo-Chr2:5507658 2.26E-152 dispersed
Cmo18g00896 Cmo-Chr18:10199572 Cmo04g01442 Cmo-Chr4:7380649 1.23E-171 wgd
Cmo18g00896 Cmo-Chr18:10199572 Cmo04g02700 Cmo-Chr4:19632374 2.34E-152 wgd
Cmo18g00896 Cmo-Chr18:10199572 Cmo07g00971 Cmo-Chr7:4762813 3.24E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00896 K09872 - csv:101204956 494.197