Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00896 | ATGGCGAAAGACGACGTGACGGCGCGGGGGTTCTCCGGCAAGGACTACCAGGACCCTCCGCCTGCGCCGCTGATCGACGCGGCGGAGGTAGGGAAGTGGTCCTTTTTCAGAGCCCTGATTGCTGAGTTTGTCGCCACTCTCCTGTTTCTGTATATCACTATCTTGATTATTATTGGCCATAGTAGCCAGTCTGACCCTCACCAACTTGGCGGCAACGCTTGCGGCGGCGTTGGCATCCTCGGTATCGCTTGGGGCTTCGGCGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATTTCAGGCGGGCACATAAACCCGGCGGTGACATTCGGGCTATTCTTAGCCCGAAAGGTGTCGCTGGTTCGAGCAGTGGCGTACATGATAGCTCAGTGCTTGGGAGCCATATGCGGAACGGGGCTGGTGAAAGCCTTACAAAGGGACTACTTCAACAGGTACGGCGGCGGTGCGAACCAGCTCGCCCACGGCTACAGCAAGGGCGCCGGCTTGGGGGCCGAAATCATCGGTACCTTCATCTTGGTCTACACCGTCTTCTCCGCCACCGACGCCAAGAGAAACGCCAGAGACTCCCACGTTCCTATATTGGCTCCGCTCTCGATTGGGTTCGCCGTGTTCATGGTTCACTTAGCCACCATTCCCATTACCGGCACCAGCATCAACCCGGCTAGAAGCTTCGGCCCCGCTGTCATCTTGAACCGGGAAAAACCTTGGGATGATCATTGGATGTTCTGGGTTGGGCCTTTCATCGGAGCCGCCATTGCAGCGCTCTACCACCAGTTCGTTTTGCGGGCCGGCGCGGGTAGGAGCCACCCGTCCGTTTGA | 843 | 58.48 | MAKDDVTARGFSGKDYQDPPPAPLIDAAEVGKWSFFRALIAEFVATLLFLYITILIIIGHSSQSDPHQLGGNACGGVGILGIAWGFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMIAQCLGAICGTGLVKALQRDYFNRYGGGANQLAHGYSKGAGLGAEIIGTFILVYTVFSATDAKRNARDSHVPILAPLSIGFAVFMVHLATIPITGTSINPARSFGPAVILNREKPWDDHWMFWVGPFIGAAIAALYHQFVLRAGAGRSHPSV | 280 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 10199572 | 10202187 | - | CmoCh18G008960.1 | Cmo18g00896 | 402669 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00896 | 280 | Pfam | Major intrinsic protein | 31 | 265 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00896 | 280 | PRINTS | Major intrinsic protein family signature | 37 | 56 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00896 | 280 | PRINTS | Major intrinsic protein family signature | 208 | 230 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00896 | 280 | PRINTS | Major intrinsic protein family signature | 123 | 142 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00896 | 280 | PRINTS | Major intrinsic protein family signature | 86 | 110 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00896 | 280 | PRINTS | Major intrinsic protein family signature | 172 | 190 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00896 | 280 | PRINTS | Major intrinsic protein family signature | 248 | 268 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00896 | 280 | ProSitePatterns | MIP family signature. | 104 | 112 | IPR022357 | - | |
Cmo18g00896 | 280 | PANTHER | AQUAPORIN PIP2-4-RELATED | 9 | 275 | - | - | |
Cmo18g00896 | 280 | Gene3D | Glycerol uptake facilitator protein. | 22 | 278 | IPR023271 | - | |
Cmo18g00896 | 280 | CDD | MIP | 37 | 268 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00896 | 280 | TIGRFAM | MIP: MIP family channel proteins | 41 | 265 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00896 | 280 | SUPERFAMILY | Aquaporin-like | 30 | 271 | IPR023271 | - | |
Cmo18g00896 | 280 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 9 | 275 | IPR034294 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00973 | Cmo-Chr7:4770232 | Cmo18g00896 | Cmo-Chr18:10199572 | 4.40E-154 | dispersed | |
Cmo18g00896 | Cmo-Chr18:10199572 | Cmo02g00893 | Cmo-Chr2:5507658 | 2.26E-152 | dispersed | |
Cmo18g00896 | Cmo-Chr18:10199572 | Cmo04g01442 | Cmo-Chr4:7380649 | 1.23E-171 | wgd | |
Cmo18g00896 | Cmo-Chr18:10199572 | Cmo04g02700 | Cmo-Chr4:19632374 | 2.34E-152 | wgd | |
Cmo18g00896 | Cmo-Chr18:10199572 | Cmo07g00971 | Cmo-Chr7:4762813 | 3.24E-142 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00896 | K09872 | - | csv:101204956 | 494.197 |