Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00900 | ATGGCGCTCAATCACCAAAACGGCACCGCCGCCGTCACATTGAACCTTTGTAACACCAACGGCGACTCTTATTCCGACCCTTTAAAATGGGGTGCGGCGGCGGAGGCGATGAAAGGAAGCCATTTGGATTTAGTGACAAAGATGGTGGAGGAGTATCGAAACCCGGTGGTCCGGCTTGGTGGTGAGAGCTTGACTATTGCTCAAGTTGCCGCCATTGCCAACGCCGCCGGCGGGAATGTCACGGTGGCGCTGGCGGAGGAGAGCCGAGCCAGGGTCAAGGCCAGCAGCGATTGGGTGATGGAGAGTATGAATAAAGGAACCGATAGCTACGGCGTCACCACCGGTTTCGGTGCAACCTCCCATCGGAGAACTCGACAGGGCGGAGCTCTTCAACGAGAACTTATTAGGTTTTTGAACGCCGGAATCTTTGGCACCGGCGCAGAATCTTCTCATAAACTGCCACCGGCGGCGACAAGAGCCGCCATGTTAGTAAGAATCAACACTCTATTACAGGGCTATTCCGGCATTAGATTCGAGGTTTTGGAAGCCATAGCCAAGTTTCTAAACCACAACATTACTCCATGTTTACCACTAAGAGGAACCATAACAGCCTCAGGCGATCTTGTTCCTCTGTCTTACATAGCTGCCCTCTTAATCGGACGACCAAATTCCAAAGCTGTCGGACCTTCCGGCGAGCTCATTAACCCATCCAAAGCCTTCGAGCTAGCCGGAATCCATGGTGGGTTCTTCGAATTACAGCCTAAAGAAGGCCTCGCGCTTGTCAATGGCACCGCCGTCGGGTCTGGCTTGGCGTCCATGGTGCTTTTCGAAGCCAACATTTTGGCTGTTTTGTCTGTCGTCTTGTCGGCTGTCTTCGCTGAAGTTATGCAAGGAAAGCCCGAATTCACCGACCATTTAACACATAAATTGAAACATCATCCAGGACAAATCGAAGCGGCGGCGGTAATGGAACATATATTATCCGGCAGCTCTTATGTAAAATCAGCTCAAAAACAGCACGAAATCGACCCATTACAGAAGCCAAAACAAGACAGATATGCATTAAGAACATCCCCACAATGGCTCGGGCCACAAATTGAGGTCATCCGAGCTGCAACGAAGATGATCGAGAGAGAAATAAACTCAGTAAACGACAACCCATTAATCGATGTGTCAAGAAACAGAGCATTACATGGAGGGAATTTCCAAGGGACACCCATTGGAGTATCAATGGACAACACAAGATTAGCCATAGCTTCAATTGGCAAGCTCATGTTTGCTCAATTCTCAGAGCTGGTAAACGATTTCTACAACAATGGGTTACCTTCAAATCTCTCAGCAAGTCGTAATCCCAGCTTGGATTATGGGTTCAAAGGAGCTGAAATCGCCATGGCATCGTATTGCTCTGAGCTTCAATTCTTAGCTAACCCTGTCACCAACCATGTCCAAAGCGCCGAGCAACACAACCAAGATGTAAACTCATTGGGATTGATATCATCCAGAAAAACAGAGGAGGCCGTGGAGATATTGAAGCTGATGTCCACTACTTTCTTGGTAGCCCTTTGCCAAGCTATTGATTTGAGACACTTGGAGGAGAATTTGAAGAACACAGTGAAGAACACAATCAGTCAAGTAGTGAAGAAAGTTCTTATCAATAAGTATAATGGCGAGCTTCATCCGATTCGATTCAGTGAAAAACATCTGCTTCAAGTGGTTGATCGAGAACAGATATTCAGTTATATTGATGATCCTTGCAGTGGTACATACCCATTAATGGAGAAGCTAAGACAAGTTCTTGTGGATCAAGCTTTGAGGAATGGGGAGAAAGAACAAGCTATGAACACTTCGATTTTTCATAAGATTGGAGAATTTGAGGAAGAACTAAGAACACTACTGCCAAAAGAGGTAGAACATACAAGAATTCAATTTGAGAACGAAAACTCGACGATTCCGAATCAAATCAAGGAATGTAGATCATACCCATTGTATAAGTTTGTGAGAGAAGGATTGGGGACGAGTTTATTAACAGGGGAAGAAATCAAATCTCCTGGAGAAGAATTTGATAAGGAACCACAAAATTGGGTTACGTTCGAGAGCAAAGTAGCTCGATTGATAGTTGTGTTGATATTCGCTTCACCGATAATGGCCGCCGCTGCTCCTCCGCCGGCTCCGACCCCAACGCCAACGCCGCCCAACACAGTTCCGGCGGGTTCTACTCCAATCGGTCACCCTCTGTTCTCACGAGTCCGTCTTGCAACCCCTTCCGACGTCCCTCACATTCACAAACTCATCCACCAAATGGCCGTCTTCGAACGCTTAACCCATCTCTTCTCCGCCACCGAATCTGCTCTCTCCGCCAATCTCTTCTCCGATCCGCCGTTCCGATCGTTCACCATTTTCATCCTCGAAGTTTCCCCTAAACCCTTCCCCGAAAACTCCCCTCATAACGCTAACCCTAACTACACCCCCGTCGTTCACATCATCAATTCCGATCTCCCTGTGGAAGATCCAGAACGGGAGATTTTCAAATCGGAAGATGAAAACATCGCGGTTGCTGGATTTGTTCTATTTTTCCCCAATTTCTCATCCTTCTTGGCGAAGCCAGGTTTCTATATAGAAGATATCTTCGTGAGAGAGTGCTACCGGAGGAAGGGTTTGGGGAAAATATTGCTGTCGGCGGTGGCGAAACAGGCGGTGAAAATGGATTACGGGAGAGTGGAGTGGGTGGTGCTTGATTGGAATACAAACGCAATCCAATTTTACGAGGAAATGGGTGCGCAAATCTTGCCGGAGTGGAGAATCTGTCGACTCACCGGCGATGCGCTTCAGGTTTATGGAAATACTAACTGA | 2850 | 47.51 | MALNHQNGTAAVTLNLCNTNGDSYSDPLKWGAAAEAMKGSHLDLVTKMVEEYRNPVVRLGGESLTIAQVAAIANAAGGNVTVALAEESRARVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTRQGGALQRELIRFLNAGIFGTGAESSHKLPPAATRAAMLVRINTLLQGYSGIRFEVLEAIAKFLNHNITPCLPLRGTITASGDLVPLSYIAALLIGRPNSKAVGPSGELINPSKAFELAGIHGGFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSVVLSAVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAVMEHILSGSSYVKSAQKQHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNRALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTEEAVEILKLMSTTFLVALCQAIDLRHLEENLKNTVKNTISQVVKKVLINKYNGELHPIRFSEKHLLQVVDREQIFSYIDDPCSGTYPLMEKLRQVLVDQALRNGEKEQAMNTSIFHKIGEFEEELRTLLPKEVEHTRIQFENENSTIPNQIKECRSYPLYKFVREGLGTSLLTGEEIKSPGEEFDKEPQNWVTFESKVARLIVVLIFASPIMAAAAPPPAPTPTPTPPNTVPAGSTPIGHPLFSRVRLATPSDVPHIHKLIHQMAVFERLTHLFSATESALSANLFSDPPFRSFTIFILEVSPKPFPENSPHNANPNYTPVVHIINSDLPVEDPEREIFKSEDENIAVAGFVLFFPNFSSFLAKPGFYIEDIFVRECYRRKGLGKILLSAVAKQAVKMDYGRVEWVVLDWNTNAIQFYEEMGAQILPEWRICRLTGDALQVYGNTN | 949 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 10253900 | 10259299 | + | CmoCh18G009000.1 | Cmo18g00900 | 402673 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00900 | 949 | Gene3D | - | 747 | 949 | - | - | |
Cmo18g00900 | 949 | TIGRFAM | phe_am_lyase: phenylalanine ammonia-lyase | 26 | 689 | IPR005922 | GO:0005737|GO:0006559|GO:0016841 | |
Cmo18g00900 | 949 | PANTHER | PHENYLALANINE AMMONIA-LYASE 1-LIKE | 18 | 689 | - | - | |
Cmo18g00900 | 949 | CDD | NAT_SF | 851 | 907 | - | - | |
Cmo18g00900 | 949 | SUPERFAMILY | L-aspartase-like | 26 | 689 | IPR008948 | GO:0003824 | |
Cmo18g00900 | 949 | CDD | PAL-HAL | 80 | 528 | IPR001106 | - | |
Cmo18g00900 | 949 | Gene3D | Fumarase/aspartase (Central domain) | 265 | 689 | - | - | |
Cmo18g00900 | 949 | Gene3D | - | 17 | 264 | IPR024083 | - | |
Cmo18g00900 | 949 | Pfam | Acetyltransferase (GNAT) family | 840 | 925 | IPR000182 | GO:0016407 | |
Cmo18g00900 | 949 | Pfam | Aromatic amino acid lyase | 64 | 539 | IPR001106 | - | |
Cmo18g00900 | 949 | Gene3D | - | 531 | 652 | IPR023144 | - | |
Cmo18g00900 | 949 | ProSiteProfiles | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 799 | 940 | IPR000182 | GO:0016407 | |
Cmo18g00900 | 949 | PANTHER | HISTIDINE AMMONIA-LYASE | 18 | 689 | IPR001106 | - | |
Cmo18g00900 | 949 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 749 | 940 | IPR016181 | - | |
Cmo18g00900 | 949 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 200 | 216 | IPR022313 | GO:0016841 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01449 | Cmo-Chr4:7420198 | Cmo18g00900 | Cmo-Chr18:10253900 | 1.06E-110 | dispersed | |
Cmo18g00900 | Cmo-Chr18:10253900 | Cmo03g01227 | Cmo-Chr3:9485339 | 0 | dispersed | |
Cmo18g00900 | Cmo-Chr18:10253900 | Cmo04g01448 | Cmo-Chr4:7417779 | 6.82E-117 | wgd | |
Cmo18g00900 | Cmo-Chr18:10253900 | Cmo07g00948 | Cmo-Chr7:4557877 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11531 | PF00221 | Lyase_aromatic | 1.90E-154 | No_clan | Cmo | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00900 | K10775 | - | gmx:100818777 | 1097.8 |