Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00900 ATGGCGCTCAATCACCAAAACGGCACCGCCGCCGTCACATTGAACCTTTGTAACACCAACGGCGACTCTTATTCCGACCCTTTAAAATGGGGTGCGGCGGCGGAGGCGATGAAAGGAAGCCATTTGGATTTAGTGACAAAGATGGTGGAGGAGTATCGAAACCCGGTGGTCCGGCTTGGTGGTGAGAGCTTGACTATTGCTCAAGTTGCCGCCATTGCCAACGCCGCCGGCGGGAATGTCACGGTGGCGCTGGCGGAGGAGAGCCGAGCCAGGGTCAAGGCCAGCAGCGATTGGGTGATGGAGAGTATGAATAAAGGAACCGATAGCTACGGCGTCACCACCGGTTTCGGTGCAACCTCCCATCGGAGAACTCGACAGGGCGGAGCTCTTCAACGAGAACTTATTAGGTTTTTGAACGCCGGAATCTTTGGCACCGGCGCAGAATCTTCTCATAAACTGCCACCGGCGGCGACAAGAGCCGCCATGTTAGTAAGAATCAACACTCTATTACAGGGCTATTCCGGCATTAGATTCGAGGTTTTGGAAGCCATAGCCAAGTTTCTAAACCACAACATTACTCCATGTTTACCACTAAGAGGAACCATAACAGCCTCAGGCGATCTTGTTCCTCTGTCTTACATAGCTGCCCTCTTAATCGGACGACCAAATTCCAAAGCTGTCGGACCTTCCGGCGAGCTCATTAACCCATCCAAAGCCTTCGAGCTAGCCGGAATCCATGGTGGGTTCTTCGAATTACAGCCTAAAGAAGGCCTCGCGCTTGTCAATGGCACCGCCGTCGGGTCTGGCTTGGCGTCCATGGTGCTTTTCGAAGCCAACATTTTGGCTGTTTTGTCTGTCGTCTTGTCGGCTGTCTTCGCTGAAGTTATGCAAGGAAAGCCCGAATTCACCGACCATTTAACACATAAATTGAAACATCATCCAGGACAAATCGAAGCGGCGGCGGTAATGGAACATATATTATCCGGCAGCTCTTATGTAAAATCAGCTCAAAAACAGCACGAAATCGACCCATTACAGAAGCCAAAACAAGACAGATATGCATTAAGAACATCCCCACAATGGCTCGGGCCACAAATTGAGGTCATCCGAGCTGCAACGAAGATGATCGAGAGAGAAATAAACTCAGTAAACGACAACCCATTAATCGATGTGTCAAGAAACAGAGCATTACATGGAGGGAATTTCCAAGGGACACCCATTGGAGTATCAATGGACAACACAAGATTAGCCATAGCTTCAATTGGCAAGCTCATGTTTGCTCAATTCTCAGAGCTGGTAAACGATTTCTACAACAATGGGTTACCTTCAAATCTCTCAGCAAGTCGTAATCCCAGCTTGGATTATGGGTTCAAAGGAGCTGAAATCGCCATGGCATCGTATTGCTCTGAGCTTCAATTCTTAGCTAACCCTGTCACCAACCATGTCCAAAGCGCCGAGCAACACAACCAAGATGTAAACTCATTGGGATTGATATCATCCAGAAAAACAGAGGAGGCCGTGGAGATATTGAAGCTGATGTCCACTACTTTCTTGGTAGCCCTTTGCCAAGCTATTGATTTGAGACACTTGGAGGAGAATTTGAAGAACACAGTGAAGAACACAATCAGTCAAGTAGTGAAGAAAGTTCTTATCAATAAGTATAATGGCGAGCTTCATCCGATTCGATTCAGTGAAAAACATCTGCTTCAAGTGGTTGATCGAGAACAGATATTCAGTTATATTGATGATCCTTGCAGTGGTACATACCCATTAATGGAGAAGCTAAGACAAGTTCTTGTGGATCAAGCTTTGAGGAATGGGGAGAAAGAACAAGCTATGAACACTTCGATTTTTCATAAGATTGGAGAATTTGAGGAAGAACTAAGAACACTACTGCCAAAAGAGGTAGAACATACAAGAATTCAATTTGAGAACGAAAACTCGACGATTCCGAATCAAATCAAGGAATGTAGATCATACCCATTGTATAAGTTTGTGAGAGAAGGATTGGGGACGAGTTTATTAACAGGGGAAGAAATCAAATCTCCTGGAGAAGAATTTGATAAGGAACCACAAAATTGGGTTACGTTCGAGAGCAAAGTAGCTCGATTGATAGTTGTGTTGATATTCGCTTCACCGATAATGGCCGCCGCTGCTCCTCCGCCGGCTCCGACCCCAACGCCAACGCCGCCCAACACAGTTCCGGCGGGTTCTACTCCAATCGGTCACCCTCTGTTCTCACGAGTCCGTCTTGCAACCCCTTCCGACGTCCCTCACATTCACAAACTCATCCACCAAATGGCCGTCTTCGAACGCTTAACCCATCTCTTCTCCGCCACCGAATCTGCTCTCTCCGCCAATCTCTTCTCCGATCCGCCGTTCCGATCGTTCACCATTTTCATCCTCGAAGTTTCCCCTAAACCCTTCCCCGAAAACTCCCCTCATAACGCTAACCCTAACTACACCCCCGTCGTTCACATCATCAATTCCGATCTCCCTGTGGAAGATCCAGAACGGGAGATTTTCAAATCGGAAGATGAAAACATCGCGGTTGCTGGATTTGTTCTATTTTTCCCCAATTTCTCATCCTTCTTGGCGAAGCCAGGTTTCTATATAGAAGATATCTTCGTGAGAGAGTGCTACCGGAGGAAGGGTTTGGGGAAAATATTGCTGTCGGCGGTGGCGAAACAGGCGGTGAAAATGGATTACGGGAGAGTGGAGTGGGTGGTGCTTGATTGGAATACAAACGCAATCCAATTTTACGAGGAAATGGGTGCGCAAATCTTGCCGGAGTGGAGAATCTGTCGACTCACCGGCGATGCGCTTCAGGTTTATGGAAATACTAACTGA 2850 47.51 MALNHQNGTAAVTLNLCNTNGDSYSDPLKWGAAAEAMKGSHLDLVTKMVEEYRNPVVRLGGESLTIAQVAAIANAAGGNVTVALAEESRARVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTRQGGALQRELIRFLNAGIFGTGAESSHKLPPAATRAAMLVRINTLLQGYSGIRFEVLEAIAKFLNHNITPCLPLRGTITASGDLVPLSYIAALLIGRPNSKAVGPSGELINPSKAFELAGIHGGFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSVVLSAVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAVMEHILSGSSYVKSAQKQHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNRALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTEEAVEILKLMSTTFLVALCQAIDLRHLEENLKNTVKNTISQVVKKVLINKYNGELHPIRFSEKHLLQVVDREQIFSYIDDPCSGTYPLMEKLRQVLVDQALRNGEKEQAMNTSIFHKIGEFEEELRTLLPKEVEHTRIQFENENSTIPNQIKECRSYPLYKFVREGLGTSLLTGEEIKSPGEEFDKEPQNWVTFESKVARLIVVLIFASPIMAAAAPPPAPTPTPTPPNTVPAGSTPIGHPLFSRVRLATPSDVPHIHKLIHQMAVFERLTHLFSATESALSANLFSDPPFRSFTIFILEVSPKPFPENSPHNANPNYTPVVHIINSDLPVEDPEREIFKSEDENIAVAGFVLFFPNFSSFLAKPGFYIEDIFVRECYRRKGLGKILLSAVAKQAVKMDYGRVEWVVLDWNTNAIQFYEEMGAQILPEWRICRLTGDALQVYGNTN 949
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 10253900 10259299 + CmoCh18G009000.1 Cmo18g00900 402673
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00900 949 Gene3D - 747 949 - -
Cmo18g00900 949 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 26 689 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cmo18g00900 949 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 18 689 - -
Cmo18g00900 949 CDD NAT_SF 851 907 - -
Cmo18g00900 949 SUPERFAMILY L-aspartase-like 26 689 IPR008948 GO:0003824
Cmo18g00900 949 CDD PAL-HAL 80 528 IPR001106 -
Cmo18g00900 949 Gene3D Fumarase/aspartase (Central domain) 265 689 - -
Cmo18g00900 949 Gene3D - 17 264 IPR024083 -
Cmo18g00900 949 Pfam Acetyltransferase (GNAT) family 840 925 IPR000182 GO:0016407
Cmo18g00900 949 Pfam Aromatic amino acid lyase 64 539 IPR001106 -
Cmo18g00900 949 Gene3D - 531 652 IPR023144 -
Cmo18g00900 949 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 799 940 IPR000182 GO:0016407
Cmo18g00900 949 PANTHER HISTIDINE AMMONIA-LYASE 18 689 IPR001106 -
Cmo18g00900 949 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 749 940 IPR016181 -
Cmo18g00900 949 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 200 216 IPR022313 GO:0016841
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01449 Cmo-Chr4:7420198 Cmo18g00900 Cmo-Chr18:10253900 1.06E-110 dispersed
Cmo18g00900 Cmo-Chr18:10253900 Cmo03g01227 Cmo-Chr3:9485339 0 dispersed
Cmo18g00900 Cmo-Chr18:10253900 Cmo04g01448 Cmo-Chr4:7417779 6.82E-117 wgd
Cmo18g00900 Cmo-Chr18:10253900 Cmo07g00948 Cmo-Chr7:4557877 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11531 PF00221 Lyase_aromatic 1.90E-154 No_clan Cmo TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00900 K10775 - gmx:100818777 1097.8