Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00911 | ATGGGTCCATCGGGGAAGGAGCTGAAAGACATGGTGGTGAGTCAACTGGGGGAGTCTTTGAGGGAGATATCGGGGCTTCCTGAGTATAACGGCATATGCAAGAAGGTGTATGGGGATTTGATTCGAAGGGTGAAGCTGTTAAGCCCTTTGTTTGAGGAATTGAGAGATGGAGATGAAGAACTTGAATTAGATGTTCTTAAGGGTTTGGAGTTGCTGAAAATTGCTTTGGATTCTGCTGTAGAGCTTCTTAGATCGGTCAGCCGAGGTAGCAAGCTATTTCAGGCTTCGCAATTAGAGAAATTAGTACTTGAGTTTCATCATATGACTGAAGATATTGAGGCAGCACTCAGCAAGCTTCCCATCAACAAGCTCGGGATCTCGGATGAGGTTCGAGAACAGACCGAACTTGTTCATGCGCAATTCAAACGAGCAAAAGAGAGAGTAGGTTCAGCTGATGCAGAGTTAGGCAAGGATTTAGTCATATTAGAGGAAGAAAAAGATCCTGACCCTGCAATATTGAAAAGAGTTTCTGAAAAACTGCATCTTCGAAGTATAACCGATCTGAAGAAAGAGTCGTTAGCGATCCATGAGCTGGTGATCTCGATCGATGGAGGAGACCCGGGGGATGTTTTTGGTAAACTGTCGTCCATTTTAAAGAAGTTGAAGGATTATGTACAATCAGAAAACCCGGAAGTTGAAACTTCTCAAGATGAAAAAAGTACGACTATTAAACACAGATCTCCTGTCATCCCCGACGATTTCAGGTGCCCCATATCTCTTGAATTAATGAGGGATCCCGTCATTGTCTCGACTGGGCAGACGTACGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGGCACAAAACCTGTCCAAAAACTCAGCAAGCTTTACAACATACAGCCTTAACACCAAATTATGTCTTGAAGAGCTTGATTTCTTTGTGGTGTGAGAACAATGGCGTTGAATTGCCAAGGAAGCAAGGTAACTGCAGAAGCAAGAAACCCGGAAGCAGTATTTCAGACTGCGATCGGGCTACCATCGATGCATTACTGCTAAAACTGGTTAATGGATCTCCAGAACAGAAAAGATCAGCTGCTGGCGAGCTCCGACTACTAGCGAAGAGGAATTCCGATAACAGAATTTGTATCGCGGAGGCGGGAGCCATTCCGTTCCTCGTCGAACTATTATCCTCAAATGATACTAGGACTCAGGAGCATGCAGTTACAGCACTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACGATTGTCGATCTTCGAGCCATTCCTGCTATTGTCGAAGTACTGAAAAATGGCAGCATGGAAGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGCTTATCCGTGATAGACGAGAACAAGGTCGCCATCGGAGCAGCTGGGGCGATTCCTGCTCTCATAAGCTTGCTTTGTGAAGGTACTCCCAGAGGAAAGAAGGATGCTGCTACTGCTATCTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGGGCTTTAAGAGCAGGCATTGTGACTCCACTCATGGGATTTCTGAAAGACACTGGAGGTGGCATGGTGGATGAAGCTCTAGCCATTCTGGCCATTCTTGCAACTCACCATGAAGGAAAGGTAGCAATAGGGCAAGCCGAGCCGATGGCGGTTCTGTTAGAGTTCATCAAAACTGGTTCGCCACGGAACCGGGAAAACGCTGCAGCCGTGCTGTGGTCACTTTGCAGTACCGATTTCGAGCAGTTGAAGCTAGCTAGGGAGCATGGTGCTGAAGAGGCACTGAAAGAAGTATCTGAGAATGGCACAGACAGAGCAAAGAGGAAAGCAGGAAGCATTCTAGAGCTCTTTCAACGCTTTGATGGACCATCTTCACCCTTGTAA | 1896 | 45.78 | MGPSGKELKDMVVSQLGESLREISGLPEYNGICKKVYGDLIRRVKLLSPLFEELRDGDEELELDVLKGLELLKIALDSAVELLRSVSRGSKLFQASQLEKLVLEFHHMTEDIEAALSKLPINKLGISDEVREQTELVHAQFKRAKERVGSADAELGKDLVILEEEKDPDPAILKRVSEKLHLRSITDLKKESLAIHELVISIDGGDPGDVFGKLSSILKKLKDYVQSENPEVETSQDEKSTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQALQHTALTPNYVLKSLISLWCENNGVELPRKQGNCRSKKPGSSISDCDRATIDALLLKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARALRAGIVTPLMGFLKDTGGGMVDEALAILAILATHHEGKVAIGQAEPMAVLLEFIKTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDGPSSPL | 631 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 10298233 | 10301315 | + | CmoCh18G009110.1 | Cmo18g00911 | 402684 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00911 | 631 | Pfam | Armadillo/beta-catenin-like repeat | 460 | 498 | IPR000225 | GO:0005515 | |
Cmo18g00911 | 631 | Pfam | Armadillo/beta-catenin-like repeat | 377 | 416 | IPR000225 | GO:0005515 | |
Cmo18g00911 | 631 | Pfam | Armadillo/beta-catenin-like repeat | 418 | 457 | IPR000225 | GO:0005515 | |
Cmo18g00911 | 631 | PANTHER | U BOX DOMAIN-CONTAINING | 12 | 624 | - | - | |
Cmo18g00911 | 631 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 388 | 430 | IPR000225 | GO:0005515 | |
Cmo18g00911 | 631 | CDD | RING-Ubox_PUB | 254 | 296 | IPR045210 | - | |
Cmo18g00911 | 631 | ProSiteProfiles | U-box domain profile. | 249 | 323 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo18g00911 | 631 | Gene3D | - | 333 | 621 | IPR011989 | - | |
Cmo18g00911 | 631 | SMART | arm_5 | 541 | 581 | IPR000225 | GO:0005515 | |
Cmo18g00911 | 631 | SMART | arm_5 | 500 | 540 | IPR000225 | GO:0005515 | |
Cmo18g00911 | 631 | SMART | arm_5 | 459 | 499 | IPR000225 | GO:0005515 | |
Cmo18g00911 | 631 | SMART | arm_5 | 418 | 458 | IPR000225 | GO:0005515 | |
Cmo18g00911 | 631 | SMART | arm_5 | 377 | 417 | IPR000225 | GO:0005515 | |
Cmo18g00911 | 631 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 429 | 471 | IPR000225 | GO:0005515 | |
Cmo18g00911 | 631 | Pfam | U-box domain | 250 | 320 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo18g00911 | 631 | SUPERFAMILY | ARM repeat | 347 | 621 | IPR016024 | - | |
Cmo18g00911 | 631 | Gene3D | - | 12 | 122 | IPR036537 | GO:0007166 | |
Cmo18g00911 | 631 | SMART | Ubox_2 | 253 | 316 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo18g00911 | 631 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 14 | 12 | 624 | - | - | |
Cmo18g00911 | 631 | SUPERFAMILY | RING/U-box | 247 | 324 | - | - | |
Cmo18g00911 | 631 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 250 | 323 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00619 | Cmo-Chr1:3195460 | Cmo18g00911 | Cmo-Chr18:10298233 | 0 | dispersed | |
Cmo02g01708 | Cmo-Chr2:9796300 | Cmo18g00911 | Cmo-Chr18:10298233 | 1.14E-88 | dispersed | |
Cmo13g00131 | Cmo-Chr13:747202 | Cmo18g00911 | Cmo-Chr18:10298233 | 0 | dispersed | |
Cmo15g00984 | Cmo-Chr15:5248499 | Cmo18g00911 | Cmo-Chr18:10298233 | 7.05E-130 | dispersed | |
Cmo18g00911 | Cmo-Chr18:10298233 | Cmo20g00715 | Cmo-Chr20:3514411 | 6.61E-145 | dispersed | |
Cmo18g00911 | Cmo-Chr18:10298233 | Cmo04g01454 | Cmo-Chr4:7459501 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00911 | - | - | csv:101221065 | 1051.58 |