Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00911 ATGGGTCCATCGGGGAAGGAGCTGAAAGACATGGTGGTGAGTCAACTGGGGGAGTCTTTGAGGGAGATATCGGGGCTTCCTGAGTATAACGGCATATGCAAGAAGGTGTATGGGGATTTGATTCGAAGGGTGAAGCTGTTAAGCCCTTTGTTTGAGGAATTGAGAGATGGAGATGAAGAACTTGAATTAGATGTTCTTAAGGGTTTGGAGTTGCTGAAAATTGCTTTGGATTCTGCTGTAGAGCTTCTTAGATCGGTCAGCCGAGGTAGCAAGCTATTTCAGGCTTCGCAATTAGAGAAATTAGTACTTGAGTTTCATCATATGACTGAAGATATTGAGGCAGCACTCAGCAAGCTTCCCATCAACAAGCTCGGGATCTCGGATGAGGTTCGAGAACAGACCGAACTTGTTCATGCGCAATTCAAACGAGCAAAAGAGAGAGTAGGTTCAGCTGATGCAGAGTTAGGCAAGGATTTAGTCATATTAGAGGAAGAAAAAGATCCTGACCCTGCAATATTGAAAAGAGTTTCTGAAAAACTGCATCTTCGAAGTATAACCGATCTGAAGAAAGAGTCGTTAGCGATCCATGAGCTGGTGATCTCGATCGATGGAGGAGACCCGGGGGATGTTTTTGGTAAACTGTCGTCCATTTTAAAGAAGTTGAAGGATTATGTACAATCAGAAAACCCGGAAGTTGAAACTTCTCAAGATGAAAAAAGTACGACTATTAAACACAGATCTCCTGTCATCCCCGACGATTTCAGGTGCCCCATATCTCTTGAATTAATGAGGGATCCCGTCATTGTCTCGACTGGGCAGACGTACGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGGCACAAAACCTGTCCAAAAACTCAGCAAGCTTTACAACATACAGCCTTAACACCAAATTATGTCTTGAAGAGCTTGATTTCTTTGTGGTGTGAGAACAATGGCGTTGAATTGCCAAGGAAGCAAGGTAACTGCAGAAGCAAGAAACCCGGAAGCAGTATTTCAGACTGCGATCGGGCTACCATCGATGCATTACTGCTAAAACTGGTTAATGGATCTCCAGAACAGAAAAGATCAGCTGCTGGCGAGCTCCGACTACTAGCGAAGAGGAATTCCGATAACAGAATTTGTATCGCGGAGGCGGGAGCCATTCCGTTCCTCGTCGAACTATTATCCTCAAATGATACTAGGACTCAGGAGCATGCAGTTACAGCACTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACGATTGTCGATCTTCGAGCCATTCCTGCTATTGTCGAAGTACTGAAAAATGGCAGCATGGAAGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGCTTATCCGTGATAGACGAGAACAAGGTCGCCATCGGAGCAGCTGGGGCGATTCCTGCTCTCATAAGCTTGCTTTGTGAAGGTACTCCCAGAGGAAAGAAGGATGCTGCTACTGCTATCTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGGGCTTTAAGAGCAGGCATTGTGACTCCACTCATGGGATTTCTGAAAGACACTGGAGGTGGCATGGTGGATGAAGCTCTAGCCATTCTGGCCATTCTTGCAACTCACCATGAAGGAAAGGTAGCAATAGGGCAAGCCGAGCCGATGGCGGTTCTGTTAGAGTTCATCAAAACTGGTTCGCCACGGAACCGGGAAAACGCTGCAGCCGTGCTGTGGTCACTTTGCAGTACCGATTTCGAGCAGTTGAAGCTAGCTAGGGAGCATGGTGCTGAAGAGGCACTGAAAGAAGTATCTGAGAATGGCACAGACAGAGCAAAGAGGAAAGCAGGAAGCATTCTAGAGCTCTTTCAACGCTTTGATGGACCATCTTCACCCTTGTAA 1896 45.78 MGPSGKELKDMVVSQLGESLREISGLPEYNGICKKVYGDLIRRVKLLSPLFEELRDGDEELELDVLKGLELLKIALDSAVELLRSVSRGSKLFQASQLEKLVLEFHHMTEDIEAALSKLPINKLGISDEVREQTELVHAQFKRAKERVGSADAELGKDLVILEEEKDPDPAILKRVSEKLHLRSITDLKKESLAIHELVISIDGGDPGDVFGKLSSILKKLKDYVQSENPEVETSQDEKSTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQALQHTALTPNYVLKSLISLWCENNGVELPRKQGNCRSKKPGSSISDCDRATIDALLLKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARALRAGIVTPLMGFLKDTGGGMVDEALAILAILATHHEGKVAIGQAEPMAVLLEFIKTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDGPSSPL 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10298233 10301315 + CmoCh18G009110.1 Cmo18g00911 402684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00911 631 Pfam Armadillo/beta-catenin-like repeat 460 498 IPR000225 GO:0005515
Cmo18g00911 631 Pfam Armadillo/beta-catenin-like repeat 377 416 IPR000225 GO:0005515
Cmo18g00911 631 Pfam Armadillo/beta-catenin-like repeat 418 457 IPR000225 GO:0005515
Cmo18g00911 631 PANTHER U BOX DOMAIN-CONTAINING 12 624 - -
Cmo18g00911 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 388 430 IPR000225 GO:0005515
Cmo18g00911 631 CDD RING-Ubox_PUB 254 296 IPR045210 -
Cmo18g00911 631 ProSiteProfiles U-box domain profile. 249 323 IPR003613 GO:0004842|GO:0016567
Cmo18g00911 631 Gene3D - 333 621 IPR011989 -
Cmo18g00911 631 SMART arm_5 541 581 IPR000225 GO:0005515
Cmo18g00911 631 SMART arm_5 500 540 IPR000225 GO:0005515
Cmo18g00911 631 SMART arm_5 459 499 IPR000225 GO:0005515
Cmo18g00911 631 SMART arm_5 418 458 IPR000225 GO:0005515
Cmo18g00911 631 SMART arm_5 377 417 IPR000225 GO:0005515
Cmo18g00911 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Cmo18g00911 631 Pfam U-box domain 250 320 IPR003613 GO:0004842|GO:0016567
Cmo18g00911 631 SUPERFAMILY ARM repeat 347 621 IPR016024 -
Cmo18g00911 631 Gene3D - 12 122 IPR036537 GO:0007166
Cmo18g00911 631 SMART Ubox_2 253 316 IPR003613 GO:0004842|GO:0016567
Cmo18g00911 631 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 12 624 - -
Cmo18g00911 631 SUPERFAMILY RING/U-box 247 324 - -
Cmo18g00911 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 323 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00619 Cmo-Chr1:3195460 Cmo18g00911 Cmo-Chr18:10298233 0 dispersed
Cmo02g01708 Cmo-Chr2:9796300 Cmo18g00911 Cmo-Chr18:10298233 1.14E-88 dispersed
Cmo13g00131 Cmo-Chr13:747202 Cmo18g00911 Cmo-Chr18:10298233 0 dispersed
Cmo15g00984 Cmo-Chr15:5248499 Cmo18g00911 Cmo-Chr18:10298233 7.05E-130 dispersed
Cmo18g00911 Cmo-Chr18:10298233 Cmo20g00715 Cmo-Chr20:3514411 6.61E-145 dispersed
Cmo18g00911 Cmo-Chr18:10298233 Cmo04g01454 Cmo-Chr4:7459501 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00911 - - csv:101221065 1051.58