Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00915 ATGTTTCCTGTTCTTAGCATTCTCTTGATATGGATGTCTGGTTTGTTCTTTCTTGTCGCTTCGGCTTCTTTCAATCTCACATTGCCCCACCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGACAGTCAATGCATCGATATCGAGAAGAAAAGCGCTATCCATCGAATCAAAGGATCAAGCCTTCTCTTGCCTCACCGGAAACCCCATAGACGATTGCTGGCGTTGCGACCCGAATTGGGCGGCGAACCGGCAGAGACTCGCTGACTGCGGCATCGGGTTCGGCCGCGACGCCATGGGTGGCAAAGGCGGCAAGATCTACATCGTCACCGACTCCTCAGATTCCAACCCGGAAAACCCAACTCCGGGAACCCTCCGCCACGCCGTGATCCAATTCGAACCACTCTGGATCATCTTCTCCGCCGACATGACAATCAAACTCAAATATGAACTTATCATCAACAACTTCAAAACGATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGTGGTTGTATCACTATCCAATACGTGTCCAACATCATCATCCACAACATCCACGTGCATCACTGTGTACCCTCTGGCAATGCCAACATAAGGTCAACCCCGACCCACGTCGGGCACCGAGGGCTATCAGACGGGGACGGGATCTCAATATTCAGCTCAAGAAAGATTTGGATAGACCATTGCTCGCTTTCATACTGCACCGACGGGCTAATAGACGCAATAATGGGATCGACAGGGATAACAATATCGAACAGCTATTTTTCGCACCACGACGAGGTGATGCTGCTGGGACATGACGACCGGTACGTGCAGGACTCGGGTATGCAAGTAACCATAGCATTCAACCACTTCGGTGAGGCTCTGGTGCAGCGCATGCCCAGGTGCAGACATGGCTACATTCATGTGGTCAACAATGACTTCACGGCTTGGGAAATGTACGCCATTGGCGGCAGTGCTCGCCCCACTATTAACAGCCAGGGTAACCGTTATGTGGCTCCTGTCAACCCCAATGCCAAAGAGGTGACGAGACGTTTAGATGCGGCGGAGACGGAATGGACGGCGTGGAATTGGCGGACGGACGGCGATATTTTGGTGAACGGCGCGTTTTTTGTGCCGTCCGGTGCCGGACTTAGCACCCAGTACGGTAAAGCCTCCAGTACTGAGCCTAAGTCGGTGGCTCTTATTAATCAGCTCACTATGAACGCTGGCGTTTTGGGTGCCCCAAGGTATAGTAATGGTGAAGGGATTGTATATCCAGGATTTAGCGGCAGCACTGGCGGCGGTAATGGCGGATATGGCGGCGGCACTGTCATTAATAATAGCCCGATGTATGGAAATAGCGGTGGTGGAGAGGATGACTTTTACGGAATGATATTTAAAGGCGGCGGTAACAGAGTATCGCCGCCGTGGTCGCCGCCGATGATCTTATGTGTGCAAATTTTAGTAGTTTTGTATGTAGTAACAAATAATAGTGGTTTATTGACGTTATAG 1509 51.42 MFPVLSILLIWMSGLFFLVASASFNLTLPHQHPDPDSVADELQRTVNASISRRKALSIESKDQAFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDSNPENPTPGTLRHAVIQFEPLWIIFSADMTIKLKYELIINNFKTIDGRGANVHITGGGCITIQYVSNIIIHNIHVHHCVPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYVAPVNPNAKEVTRRLDAAETEWTAWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSTEPKSVALINQLTMNAGVLGAPRYSNGEGIVYPGFSGSTGGGNGGYGGGTVINNSPMYGNSGGGEDDFYGMIFKGGGNRVSPPWSPPMILCVQILVVLYVVTNNSGLLTL 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10329109 10334031 - CmoCh18G009150.1 Cmo18g00915 402688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00915 502 Pfam Pectate lyase 155 333 IPR002022 -
Cmo18g00915 502 Gene3D - 70 412 IPR012334 -
Cmo18g00915 502 SMART amb_all 145 342 IPR002022 -
Cmo18g00915 502 SUPERFAMILY Pectin lyase-like 61 390 IPR011050 -
Cmo18g00915 502 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Cmo18g00915 502 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Cmo18g00915 502 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Cmo18g00915 502 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Cmo18g00915 502 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Cmo18g00915 502 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Cmo18g00915 502 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Cmo18g00915 502 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Cmo18g00915 502 PANTHER PECTATE LYASE 10 429 - -
Cmo18g00915 502 PANTHER PECTATE LYASE 18-RELATED 10 429 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00508 Cmo-Chr15:2333478 Cmo18g00915 Cmo-Chr18:10329109 0 dispersed
Cmo18g00915 Cmo-Chr18:10329109 Cmo14g01918 Cmo-Chr14:14249841 0 dispersed
Cmo18g00915 Cmo-Chr18:10329109 Cmo04g01465 Cmo-Chr4:7492582 0 wgd
Cmo18g00915 Cmo-Chr18:10329109 Cmo04g02667 Cmo-Chr4:19398147 3.15E-23 wgd
Cmo18g00915 Cmo-Chr18:10329109 Cmo07g00925 Cmo-Chr7:4447501 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00915 K01728 - csv:101205739 871.692