Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00927 ATGCATGTAAGATGGCAGCGTATAAATATCAACGTAAATGATCACACGCAAAGACACATCCTCTGTGATTCACAGGAACGTGATCGAGAGTATGCTGCGCGCGTACGTAAAGTGAATCAAGGTACCGATCGACGTCGATTCTTCGAAGTCCAAGGTTTCAGTCAGTGCAAGAGAGATCTGCCAATTTGCTTTGTTGCCGCGGCGGAGAACGATCGCAATCCGACCATGAATTGTCTTCAAAACCTTTCAATATCATCCTCTTTGCCGCTGCGAAGCTTCAAATGCCGGCAGAGAAAGCCTGAGTTCCAGCCCTGCAAACTGGTGATAAGGAACTTTACCGATCTACATCGACGTTCTTCCGTGAAGGCCGTATCTGGATCTATATCAAGTGTTGAAATAAGTGGCGCTGAAGTGGATGATGCCGAGGAAAAAGAGGCAAAGGAGGAAAAGGAGGAAAAGGAGGAAAAGGAGGAAAAGTCTGAGATATACAGCCAGAACATGACAGAAGCTATGGGTGCTGTATTGACATATAGACATGAGCTGGGAATGAACTACAACTTCATTTGTCCGGATTTAATTGTAGGGTCATGCCTACAGACTCGAGAGGATGTTGACAAGCTCCGCAGCATTGGAGTTAAAACAATTTTCTGCTTGCAGCAAGATCCAGATTTAGAATATTTTGGGGTTGACATTGGTGCTATAATAGAGTATACAAGGACGTTTGATGATATCGAACATTTGCGAGCTCAAATAAGGGATTTTGATGCATTCGACCTACGGCTAAGATTACCAGCTGTTGTAAGCAAATTACATAAAGCGATAAACCAAAACGGTGGAGTGACTTATATACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCGCTGGCTTATATGTTCTGGGTTCAAGGCTACACGCTCAATGAGGCTTTAGAATTACTGCTGAGCAAACGACCATGCTTCCCAAAAATAGATGCTATTAAAAGTTCAACGGCTGATATTCTTTCGGGATTTAAAAAGAAGCCTATCACTTTATCGTGGGAAGATGACCAATGCTCAATTGTAGAGGTATCTGGACTTGATATTGGATGGGGTCAGAGGGTTCTATTAAAATTCGACAAGGAACGAGGTGTATGGATTCTCAACAAGGAACTGGCGGAAGGACTATATGAATACAAATATATCATTGACGGTCAATGGAGGTGCAACGAAACCGAGCCCGTTACTCCACCCAACAAAGATGGCCACGTCAACAATTTCATTCAAGTTGATGGTGATGATGATCCAAGTAGTGAGAGAGCTATTGTTCGAGGAAGGTTAACTGGAGATGACCCAGAACTCACGAATGAAGAAAGGAGCAAAATAAAGCAATTTCTTGAAGCTTGCCCGGATGAAAATTAA 1404 43.3 MHVRWQRININVNDHTQRHILCDSQERDREYAARVRKVNQGTDRRRFFEVQGFSQCKRDLPICFVAAAENDRNPTMNCLQNLSISSSLPLRSFKCRQRKPEFQPCKLVIRNFTDLHRRSSVKAVSGSISSVEISGAEVDDAEEKEAKEEKEEKEEKEEKSEIYSQNMTEAMGAVLTYRHELGMNYNFICPDLIVGSCLQTREDVDKLRSIGVKTIFCLQQDPDLEYFGVDIGAIIEYTRTFDDIEHLRAQIRDFDAFDLRLRLPAVVSKLHKAINQNGGVTYIHCTAGLGRAPAVALAYMFWVQGYTLNEALELLLSKRPCFPKIDAIKSSTADILSGFKKKPITLSWEDDQCSIVEVSGLDIGWGQRVLLKFDKERGVWILNKELAEGLYEYKYIIDGQWRCNETEPVTPPNKDGHVNNFIQVDGDDDPSSERAIVRGRLTGDDPELTNEERSKIKQFLEACPDEN 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10439013 10447075 - CmoCh18G009270.1 Cmo18g00927 402700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00927 467 Pfam Glycogen recognition site of AMP-activated protein kinase 343 427 IPR032640 -
Cmo18g00927 467 MobiDBLite consensus disorder prediction 134 161 - -
Cmo18g00927 467 MobiDBLite consensus disorder prediction 140 161 - -
Cmo18g00927 467 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 261 320 IPR000387 GO:0016311|GO:0016791
Cmo18g00927 467 Coils Coil 131 166 - -
Cmo18g00927 467 Pfam Dual specificity phosphatase, catalytic domain 236 322 IPR000340 GO:0008138|GO:0016311
Cmo18g00927 467 ProSiteProfiles Dual specificity protein phosphatase domain profile. 184 341 IPR020422 GO:0006470|GO:0008138
Cmo18g00927 467 MobiDBLite consensus disorder prediction 442 467 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01690 Cmo-Chr11:11970172 Cmo18g00927 Cmo-Chr18:10439013 1.87E-29 transposed
Cmo18g00927 Cmo-Chr18:10439013 Cmo04g01478 Cmo-Chr4:7568104 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00927 - - cpep:111802109 738.028