Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00930 ATGTTGGCAATGGAGAAGGATTTTGATGCTAAGTTGATGATTCAGAAACAGGGGAACGCTTCTAATGGCGGCGGCAATGTTCAGAGATCCAATAGCTTTGCGTTTCGTGCTCCTCAGGAGAATTTTACTATACAGGATTTTGAATTGGGGAAGATTTATGGCGTTGGTTCATATTCCAAGGTTGTGAGGGCGAAGAAGAAGGACACAGGAATTGTGTATGCATTGAAGATAATGGACAAGAAATTCATTACAAAGGAAAATAAAACTGCTTATGTGAAGTTGGAAAGGATTGTACTTGATCAATTGGACCATCCTGGTGTTGTGAGGCTATTTTTTACCTTTCAGGATACTTTTTCTTTGTACATGGCATTGGAGTCGTGTGAAGGTGGAGAGCTTTTTGATCAGATAAATAGGAAAGGTCGACTATCGGAGGAGGAAGCTCGGTTTTACGCCGCAGAAGTCATCGACGCTCTTGAATACATACACAACATGGGATTGATACACCGAGATATCAAGCCTGAGAACTTGCTGCTTACTACTGATGGACATATCAAAATAGCCGATTTCGGGAGCGTAAAGCCTATGGTCGACAGTCGAATCACCGTGCTTCCGAATGCAGCATCGGATGACAAAGCTTGTACATTTGTGGGCACTGCTGCATATGTTCCTCCAGAAGTTCTTAATTCCTCCCCTGCAACTTTCGGAAACGACCTTTGGGCGCTCGGGTGCACCGTGTACCAAATGCTTTCAGGGACTTCTCCTTTTAAGGATGCAAGTGAGTGGCTTATTTTTCAAAAAATTGTAGCTCGAGATATAAAATTCCCCAGTTATTTTTCCGAGCAAGCCCGGGATCTCATCGACCACCTATTGGATTTAGATCCCGTTAAGAGACCGGGCGCCGGAGCTGAGGGCTATGCTTCTCTTAAGAGTCATCCATTCTTTGAGGGGGTTGATTGGAAGAACATAAGAACACAAACTCCTCCCAGACTTGCTTTAGAAGCAGTGTCTCGTTCGAACGAGAACGACGACAGCTCCGAGTCCTCTTGGAATCCTTCGCATATCGGAGACGGTGCACCGAGACAAAACGACGGGAATGCTGGTTCTGCATCGACTTCTGAAGGATCGAATCATATTGCTCGGATTGCATCGATAGACTCCTTCGATTCGAAATGGCAACAATTTCTTGAACCTGGAGAATCTGTTCTTATGATATCAATGGTGAAAAAGATTCAGAAAATCACAAGCAAAAAGGTTCAGCTCATCCTCACAAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTTAAGGGGAATATCATTTGGTCTGACAATCCTAATGACCTCAACATTCAAGTGATTAGTCCTTCACATTTCAAGATTTGTACGCCGAAAAAGATTGCTTCGTTCGAGGACGCGAAACAACGAGCATGGCAATGGAAGAAGGCGATCGAGGGGCTTCAGAATCGGTGA 1479 43.95 MLAMEKDFDAKLMIQKQGNASNGGGNVQRSNSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQINRKGRLSEEEARFYAAEVIDALEYIHNMGLIHRDIKPENLLLTTDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTVYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPVKRPGAGAEGYASLKSHPFFEGVDWKNIRTQTPPRLALEAVSRSNENDDSSESSWNPSHIGDGAPRQNDGNAGSASTSEGSNHIARIASIDSFDSKWQQFLEPGESVLMISMVKKIQKITSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVISPSHFKICTPKKIASFEDAKQRAWQWKKAIEGLQNR 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10466107 10472483 + CmoCh18G009300.1 Cmo18g00930 402703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00930 492 SUPERFAMILY PH domain-like 308 491 - -
Cmo18g00930 492 SMART serkin_6 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00930 492 Gene3D Transferase(Phosphotransferase) domain 1 131 326 - -
Cmo18g00930 492 Pfam PH domain 389 491 IPR033931 -
Cmo18g00930 492 Pfam Protein kinase domain 49 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00930 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cmo18g00930 492 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 488 - -
Cmo18g00930 492 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 21 488 - -
Cmo18g00930 492 ProSiteProfiles Protein kinase domain profile. 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00930 492 Coils Coil 472 492 - -
Cmo18g00930 492 SUPERFAMILY Protein kinase-like (PK-like) 44 356 IPR011009 -
Cmo18g00930 492 MobiDBLite consensus disorder prediction 337 355 - -
Cmo18g00930 492 CDD STKc_PDK1 45 314 IPR039046 GO:0004674
Cmo18g00930 492 Gene3D - 361 492 IPR011993 -
Cmo18g00930 492 MobiDBLite consensus disorder prediction 333 374 - -
Cmo18g00930 492 Gene3D Phosphorylase Kinase; domain 1 45 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00930 Cmo-Chr18:10466107 Cmo10g00172 Cmo-Chr10:774296 6.26E-57 dispersed
Cmo18g00930 Cmo-Chr18:10466107 Cmo04g01480 Cmo-Chr4:7585406 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75071 PF00069 Pkinase 3.20E-65 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00930 K06276 - csv:101212874 910.598