Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00940 ATGGAGCAGTATGAGAAAGTTGAGAAGATTGGAGAAGGAACGTATGGTGTGGTTTACAAGGCACGCGATCGTGTCACAAATGAGACTATTGCTTTGAAGAAGATCCGCTTGGAGCAAGAAGATGAGGGAGTGCCAAGCACAGCCATTCGTGAAATTTCTCTGTTGAAGGAAATGCAGCATGGCAACATTGTAAGGTTGCAAGATGTAGTGCATAGCGAGAAGCGCCTGTATCTTGTTTTCGAGTATCTGGATTTGGATTTGAAGAAGCACATGGACTCATCTCCTGAATTTGCAAAGGATCCACGCCAAGTAAAAAGGTTTCTTTACCAAATTCTTCGTGGCATTGCATATTGCCATTCTCATAGAGTTCTTCATCGAGATTTAAAACCCCAAAATCTACTCATAGATCGTCGCACCAATGCCCTGAAGCTTGCTGACTTTGGACTGGCAAGAGCATTTGGTATTCCTGTTAGAACATTCACGCATGAGGTGGTGACGCTTTGGTACAGAGCACCAGAAATATTACTTGGTTCCCGACATTATTCCACTCCTGTGGATGTTTGGTCGGTGGGTTGTATATTTGCTGAGATGGTTAACCAGCGGCCACTATTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAGATATTTAGAGTTCTGGGAACTCCAAATGAAGATTCATGGCCTGGCGTTACATCTTTGCCTGATTTCAAGTCTGCTTTCCCCAAGTGGCCTTCCAAGGACCTGGCTTCTGTAGTTCCAAATCTCGAATCTGCTGGCATTGATCTTCTCTCTAAAATGCTGTGCTTGGATCCCACCAAAAGAGTCACTGCCAGGAGTGCTCTCGAGCATGAATACTTCAAAGATGTTGGGTTTGTTCCCTGA 885 44.52 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDPRQVKRFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDSWPGVTSLPDFKSAFPKWPSKDLASVVPNLESAGIDLLSKMLCLDPTKRVTARSALEHEYFKDVGFVP 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10556806 10561882 + CmoCh18G009400.1 Cmo18g00940 402713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00940 294 PANTHER CELL DIVISION PROTEIN KINASE 3 291 - -
Cmo18g00940 294 CDD STKc_CDK1_CdkB_like 4 287 - -
Cmo18g00940 294 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Cmo18g00940 294 SMART serkin_6 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00940 294 PANTHER - 3 291 - -
Cmo18g00940 294 ProSiteProfiles Protein kinase domain profile. 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00940 294 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
Cmo18g00940 294 SUPERFAMILY Protein kinase-like (PK-like) 1 290 IPR011009 -
Cmo18g00940 294 Pfam Protein kinase domain 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00940 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Cmo18g00940 294 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00611 Cmo-Chr6:3014576 Cmo18g00940 Cmo-Chr18:10556806 3.60E-71 dispersed
Cmo07g00668 Cmo-Chr7:3010677 Cmo18g00940 Cmo-Chr18:10556806 1.47E-35 dispersed
Cmo07g01231 Cmo-Chr7:6716325 Cmo18g00940 Cmo-Chr18:10556806 1.50E-114 dispersed
Cmo10g00341 Cmo-Chr10:1537400 Cmo18g00940 Cmo-Chr18:10556806 2.89E-91 dispersed
Cmo11g00303 Cmo-Chr11:1460967 Cmo18g00940 Cmo-Chr18:10556806 6.16E-89 dispersed
Cmo16g01258 Cmo-Chr16:8970864 Cmo18g00940 Cmo-Chr18:10556806 1.49E-69 dispersed
Cmo18g00940 Cmo-Chr18:10556806 Cmo20g00018 Cmo-Chr20:154242 8.51E-86 dispersed
Cmo18g00940 Cmo-Chr18:10556806 Cmo04g01496 Cmo-Chr4:7659026 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75072 PF00069 Pkinase 3.20E-81 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00940 K02206 - csv:116405161 582.408