Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00957 ATGAAGCGCGGAGCGTCGATTGAACGCCAATTGGGGGTGGGAAAAGGGATGGCCATAAGCCGATGTGTCGTCTTTAATCACTCACTTCTTCACTATCATCGTCGTCCTCCTTCACTTTTCTCATCTGCCCTGCGTTCGACCTCGTCATCCATGGAAGCTCCTCCCGAAGGTTACCGCAGAAACGTTGGCATTTGCCTCATCAATTCTTCTAAGAAGATTTTTGCTGCCTCAAGGTTGGATATACCAGATGCTTGGCAAATGCCACAGGGCGGCGTGGATGAGGGTGAAGATCCAAGAAGTGCAGCCATCAGAGAACTTAGAGAAGAAACAGGAGTCAGATCCGCAGAGATTATTGCTGAAGTACCTTATTGGCTGACTTATGACTTCCCACCACATGTCCGGGAAAAACTTCGACATCAGTGGGGTTCTGACTGGAAGGGTCAAGCGCAGAAGTGGTTTCTGCTGAAGTTGACTGGAAGTGACGAAGAGATCAATCTTTTAGGTGATGGGACTGAGAAACCCGAGTTTGGCGAATGGTCATGGATGTCACCTGAACAAGTAGTCGAACGTGCTGTAGATTTCAAGAAACCCGTTTACAAAGACGTTCTAACGGTATTCAAACCCCATCTCGAGTAA 636 48.11 MKRGASIERQLGVGKGMAISRCVVFNHSLLHYHRRPPSLFSSALRSTSSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEIIAEVPYWLTYDFPPHVREKLRHQWGSDWKGQAQKWFLLKLTGSDEEINLLGDGTEKPEFGEWSWMSPEQVVERAVDFKKPVYKDVLTVFKPHLE 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10663741 10667660 + CmoCh18G009570.1 Cmo18g00957 402730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00957 211 ProSiteProfiles Nudix hydrolase domain profile. 57 204 IPR000086 -
Cmo18g00957 211 Hamap RNA pyrophosphohydrolase [rppH]. 52 211 IPR022927 -
Cmo18g00957 211 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 47 210 - -
Cmo18g00957 211 PRINTS NUDIX hydrolase family signature 85 99 IPR020476 -
Cmo18g00957 211 PRINTS NUDIX hydrolase family signature 99 114 IPR020476 -
Cmo18g00957 211 PANTHER NUDIX HYDROLASE 26, CHLOROPLASTIC 28 210 - -
Cmo18g00957 211 CDD Ap4A_hydrolase_plant_like 57 206 IPR022927 -
Cmo18g00957 211 ProSitePatterns Nudix box signature. 90 111 IPR020084 GO:0016787
Cmo18g00957 211 Pfam NUDIX domain 58 201 IPR000086 -
Cmo18g00957 211 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 28 210 - -
Cmo18g00957 211 SUPERFAMILY Nudix 54 209 IPR015797 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00957 - - - csv:101206740 365.925
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00352 Cmo-Chr14:1593901 Cmo18g00957 Cmo-Chr18:10663741 4.46E-45 dispersed
Cmo14g00353 Cmo-Chr14:1596149 Cmo18g00957 Cmo-Chr18:10663741 2.40E-17 dispersed
Cmo18g00957 Cmo-Chr18:10663741 Cmo03g00619 Cmo-Chr3:5766258 8.23E-06 dispersed
Cmo18g00957 Cmo-Chr18:10663741 Cmo04g01071 Cmo-Chr4:5368638 1.18E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g428 . . . . Bpe13g01031 . . . . Cmo18g00957 . Cma18g00956 . Car18g00873 . Cpe09g00366 . . . . . . . . Cla07g00640 Cam07g0663 Cec07g0715 Cco07g0718 Clacu07g0661 Cmu07g0684 Cre07g1032 . . Cone6ag0396 Cone9ag0422 Lsi04g01163 Csa05g02704 Chy10g01230 Cme10g01537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000763 3 3 1 2 1 3 4 3 3 3 3 3 4 3 3 3 3 4 3 3 3 2 5 3 4 3 3 5 5 2 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00957 Cmo_Chr18 FPKM 10.818855 12.452496 15.696128 13.617155 10.627098 11.89555 12.612103 11.884595 13.547141 12.62049