Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00972 ATGAACTCAGTTCTCATTTTCCTTCTCCTTCTCTCTCTCCGCCGCGCCGGAGCTTTCGATTCTCCTCCACCACCACCACCACCATCCGCCGACCTCTGTAAATCCACTCTCTACCCTAAGCTCTGCCGCTCCATTCTCTCCTCCATCCGATTCTCTCCCTCCGATCCCTACGGCTACGGGAAATTCTCCGTCAAGAACTGCCTCAAACAGGCGATCAAAATGTCGAGCGTAATCGGCGACTATCTTGATCGAGGAAGCGATTCGAGGCTGAATCAGCGGGAGGCCGGTGCTCTGGAAGATTGCAGAGATCTTTCCGATTCAAACGTGGAGTTTCTCCGGTCGATTGAGAGCGTATTGGAGGCGGCGAAGAGCGTGGATGAGGAACTAGTGGAGCGTGTTCAGAGTATTTTGAGCGCGATCGTCACGAACGGCCAGACTTGTATAGACGGATTGGTGGAATCGAGGAGTAGTTTGGGGAATGCGCTAACGGCGCCGATGTCGAGCGCCGGACAACTGTACAGTGTGTCGTTGGGATTGGTCACGAACTCGTTGTCGCGACTGTGGAAGAAGCGGCGGATGAAGGGAGACGGAGGGGATATCGCGGCGGGCGCACGGAACAGAGAGCCACTGAACACGCTGATCAAGGGACTACATAAAATGGGTTCATGCAACCAATCCACAGGCTGCTCAGGAAGGAAGCGTTTGTTGGCTGATTTAGGCACCACAGGAATCTTCATCAACGATACTGTGGTTGTTAGCTCTACTGGTGCAGACAACTTCACCTCAATTGGAGATGCTATTGCCTTTGCTCCCAACAATTCAATGCCTCAAGATGGCTACTTTGTTATCTATGTTAGAGGAGGATACTATGAAGAATACGTCATCGTCCCCAAATACAAAACCAACATAATGCTCATTGGAGATGGCATTAACCGAACCGTCATCACTGGGAACCATAGCGTTGTTGATGGTTGGACGACGTATAATTCCTCTACATTTACTGTTTGTGGGGATAGATTTGTAGCAATAGATGTGACATTTAGGAACACAGCAGGGCCAGAGAAGCACCAAGCAGTAGCACTAAGGAGCAGTGCAGATCTCTCAACATTCTACCGCTGCAGCTTCGAGGGCTATCAAGACACTCTCTACGTCCATTCTCTAAGACAATTCTACAGAGAATGCGACATTTACGGCACAGTAGATTTCATATTTGGCAATGCCGCTGCAGTTTTCCAAAAATGCAATCTATACGCCAGAAAGCCACTCCCAAACCAAAAGATCGCCATCACGGCACAGGGCCGAACCGATCCAAACCAAAACACAGGTATCTCGATCCACGACTGCACGATCAAGGCAGCCCCCGACTGGGAGACGGATTATTCAAACTCGACGACGACAAACTATCTTGGACGGCCGTGGAAGCAGTACTCAAGAACAGTGTATATGCAGTGTTACATTGGGGATTTGATCAGCCCTGTGGGGTGGTTGGAGTGGAATGGAACAGCAGGGTTGGACACTTTGTATTATGGGGAGTTTGAGAATTATGGGCCAGGAGCTAACACAAGCTTGAGGGTGGATTGGCCTGGCTATAGCTTGATGAATATTACTCAAGCTATGAACTTTACTGTCTATAATCTTACTATGGGAGATACATGGCTGCCTTACACTGATATTCCCTTCTCTGGTGGTTTGGTCTAA 1698 49.41 MNSVLIFLLLLSLRRAGAFDSPPPPPPPSADLCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKNCLKQAIKMSSVIGDYLDRGSDSRLNQREAGALEDCRDLSDSNVEFLRSIESVLEAAKSVDEELVERVQSILSAIVTNGQTCIDGLVESRSSLGNALTAPMSSAGQLYSVSLGLVTNSLSRLWKKRRMKGDGGDIAAGARNREPLNTLIKGLHKMGSCNQSTGCSGRKRLLADLGTTGIFINDTVVVSSTGADNFTSIGDAIAFAPNNSMPQDGYFVIYVRGGYYEEYVIVPKYKTNIMLIGDGINRTVITGNHSVVDGWTTYNSSTFTVCGDRFVAIDVTFRNTAGPEKHQAVALRSSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQKCNLYARKPLPNQKIAITAQGRTDPNQNTGISIHDCTIKAAPDWETDYSNSTTTNYLGRPWKQYSRTVYMQCYIGDLISPVGWLEWNGTAGLDTLYYGEFENYGPGANTSLRVDWPGYSLMNITQAMNFTVYNLTMGDTWLPYTDIPFSGGLV 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10744845 10749796 - CmoCh18G009720.1 Cmo18g00972 402745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00972 565 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Cmo18g00972 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 182 IPR035513 -
Cmo18g00972 565 SMART PMEI_2 24 179 IPR006501 GO:0004857
Cmo18g00972 565 Pfam Pectinesterase 250 549 IPR000070 GO:0030599|GO:0042545
Cmo18g00972 565 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 47-RELATED 13 564 - -
Cmo18g00972 565 Gene3D - 244 564 IPR012334 -
Cmo18g00972 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 183 IPR035513 -
Cmo18g00972 565 SUPERFAMILY Pectin lyase-like 246 563 IPR011050 -
Cmo18g00972 565 TIGRFAM PME_inhib: pectinesterase inhibitor domain 30 180 IPR006501 GO:0004857
Cmo18g00972 565 CDD PMEI-like_3 32 182 - -
Cmo18g00972 565 Pfam Plant invertase/pectin methylesterase inhibitor 31 178 IPR006501 GO:0004857
Cmo18g00972 565 PANTHER PECTINESTERASE 13 564 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00972 Cmo-Chr18:10744845 Cmo20g01147 Cmo-Chr20:11262277 2.29E-147 dispersed
Cmo18g00972 Cmo-Chr18:10744845 Cmo04g01529 Cmo-Chr4:7814003 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00972 K01051 - csv:101206112 971.844