Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00973 ATGAGTATCTCTCCCTCTGCTTCTTCTTGCTCTTCGTCTTCCTCTTCCTGCGTCGGTTCAGATTCCGCCATTAATATTAAGAAGAAGAAGAAGAATCTCTCCGCTCCTCTCCGGCCGCACTCGGAGAAAGCCAGAATCAAGCGGCGACGGAGGAATCAGGACGAATCGAAACGCGAGATTCATAATAACAACAGCACTGGAATCAACAACAACAACAACAACGCATCTTCCGCTCGCCGGAGTTCCATTTACAGAGGAGTCACGAGGCATCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGCGCGAACTTATGACCTAGCTGCCCTCAAATACTGGGGACCGGAAACCACTCTCAATTTCCCGGCAGAGTCGTACACGAATGAAATGGAAGAAATGCGGAAAGTAACGAAGGAAGAATATTTGGCGTCGTTGCGGCGGCGGAGCAGTGGATTTTCTAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGACACCACTACAATGGCCGGTGGGAGGCTCGGATTGGCCGCGTTTTTGGAAGCAAATATCTTTACTTGGGAACTTACAACACACAAGAAGAAGCTGCTGCAGCATATGACATGGCTGCAATTGAATACAGAGGACCCAATGCAGTTACCAACTTTGACATTAGCAATTACATTGGGAGGAGATTAGAGACCAAATCATCAGTTTTTGAAGCAGCTGAGCTACCAAAAGAGGAGCCCAATGACTCCCCTGTTTCTTCCGAGGGGGAAGTTGTGTATCAGCCCGAAGAACAGCAAACGACGTCGTGGCCGAGCCTTCAATTCTCGACGATGCTTCCATTGATCGAGAATAGCCCGTCAATGGGTGTCATGGGAGACGATCAGGATCTCAATTGGTCTTTCTTAGACACGGGATTCGTCGAGGTGCCTGACCTCCCGCTTGAGAAAACGAGTGAATTAGCTGATCTCTACTTCGATGAGATTGGGTTTGAGGACGACATTGGTTTGATGTTCGAAACGAGCATTGAGGGTGGTGATAGTAAAGAAGATCTTAATGTTGGGAAGATGGAGATGAACAATGCTCCTTCACCATCGTCTTCGTCGATAATAACCAACTCGGTTTCGTGCGAAAAAGATGAGATTGTTGGGTTTTGTTGA 1188 48.23 MSISPSASSCSSSSSSCVGSDSAINIKKKKKNLSAPLRPHSEKARIKRRRRNQDESKREIHNNNSTGINNNNNNASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQARTYDLAALKYWGPETTLNFPAESYTNEMEEMRKVTKEEYLASLRRRSSGFSRGVSKYRGVARHHYNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGPNAVTNFDISNYIGRRLETKSSVFEAAELPKEEPNDSPVSSEGEVVYQPEEQQTTSWPSLQFSTMLPLIENSPSMGVMGDDQDLNWSFLDTGFVEVPDLPLEKTSELADLYFDEIGFEDDIGLMFETSIEGGDSKEDLNVGKMEMNNAPSPSSSSIITNSVSCEKDEIVGFC 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10751404 10760837 - CmoCh18G009730.1 Cmo18g00973 402746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00973 395 SUPERFAMILY DNA-binding domain 82 138 IPR016177 GO:0003677
Cmo18g00973 395 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 358 - -
Cmo18g00973 395 ProSiteProfiles AP2/ERF domain profile. 83 137 IPR001471 GO:0003700|GO:0006355
Cmo18g00973 395 PRINTS Ethylene responsive element binding protein signature 213 233 IPR001471 GO:0003700|GO:0006355
Cmo18g00973 395 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Cmo18g00973 395 MobiDBLite consensus disorder prediction 1 80 - -
Cmo18g00973 395 MobiDBLite consensus disorder prediction 62 80 - -
Cmo18g00973 395 SUPERFAMILY DNA-binding domain 172 233 IPR016177 GO:0003677
Cmo18g00973 395 CDD AP2 83 138 IPR001471 GO:0003700|GO:0006355
Cmo18g00973 395 Gene3D AP2/ERF domain 83 139 IPR036955 GO:0003700|GO:0006355
Cmo18g00973 395 Gene3D AP2/ERF domain 172 233 IPR036955 GO:0003700|GO:0006355
Cmo18g00973 395 MobiDBLite consensus disorder prediction 1 22 - -
Cmo18g00973 395 ProSiteProfiles AP2/ERF domain profile. 173 231 IPR001471 GO:0003700|GO:0006355
Cmo18g00973 395 CDD AP2 172 233 IPR001471 GO:0003700|GO:0006355
Cmo18g00973 395 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 6 358 - -
Cmo18g00973 395 SMART rav1_2 83 143 IPR001471 GO:0003700|GO:0006355
Cmo18g00973 395 SMART rav1_2 173 237 IPR001471 GO:0003700|GO:0006355
Cmo18g00973 395 Pfam AP2 domain 172 223 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00973 Cmo-Chr18:10751404 Cmo17g00881 Cmo-Chr17:8019784 3.11E-81 dispersed
Cmo18g00973 Cmo-Chr18:10751404 Cmo04g01529 Cmo-Chr4:7814003 4.31E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11537 PF00847 AP2 1.90E-11 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00973 - - csv:101206349 478.789