Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00973 | ATGAGTATCTCTCCCTCTGCTTCTTCTTGCTCTTCGTCTTCCTCTTCCTGCGTCGGTTCAGATTCCGCCATTAATATTAAGAAGAAGAAGAAGAATCTCTCCGCTCCTCTCCGGCCGCACTCGGAGAAAGCCAGAATCAAGCGGCGACGGAGGAATCAGGACGAATCGAAACGCGAGATTCATAATAACAACAGCACTGGAATCAACAACAACAACAACAACGCATCTTCCGCTCGCCGGAGTTCCATTTACAGAGGAGTCACGAGGCATCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGCGCGAACTTATGACCTAGCTGCCCTCAAATACTGGGGACCGGAAACCACTCTCAATTTCCCGGCAGAGTCGTACACGAATGAAATGGAAGAAATGCGGAAAGTAACGAAGGAAGAATATTTGGCGTCGTTGCGGCGGCGGAGCAGTGGATTTTCTAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGACACCACTACAATGGCCGGTGGGAGGCTCGGATTGGCCGCGTTTTTGGAAGCAAATATCTTTACTTGGGAACTTACAACACACAAGAAGAAGCTGCTGCAGCATATGACATGGCTGCAATTGAATACAGAGGACCCAATGCAGTTACCAACTTTGACATTAGCAATTACATTGGGAGGAGATTAGAGACCAAATCATCAGTTTTTGAAGCAGCTGAGCTACCAAAAGAGGAGCCCAATGACTCCCCTGTTTCTTCCGAGGGGGAAGTTGTGTATCAGCCCGAAGAACAGCAAACGACGTCGTGGCCGAGCCTTCAATTCTCGACGATGCTTCCATTGATCGAGAATAGCCCGTCAATGGGTGTCATGGGAGACGATCAGGATCTCAATTGGTCTTTCTTAGACACGGGATTCGTCGAGGTGCCTGACCTCCCGCTTGAGAAAACGAGTGAATTAGCTGATCTCTACTTCGATGAGATTGGGTTTGAGGACGACATTGGTTTGATGTTCGAAACGAGCATTGAGGGTGGTGATAGTAAAGAAGATCTTAATGTTGGGAAGATGGAGATGAACAATGCTCCTTCACCATCGTCTTCGTCGATAATAACCAACTCGGTTTCGTGCGAAAAAGATGAGATTGTTGGGTTTTGTTGA | 1188 | 48.23 | MSISPSASSCSSSSSSCVGSDSAINIKKKKKNLSAPLRPHSEKARIKRRRRNQDESKREIHNNNSTGINNNNNNASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQARTYDLAALKYWGPETTLNFPAESYTNEMEEMRKVTKEEYLASLRRRSSGFSRGVSKYRGVARHHYNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGPNAVTNFDISNYIGRRLETKSSVFEAAELPKEEPNDSPVSSEGEVVYQPEEQQTTSWPSLQFSTMLPLIENSPSMGVMGDDQDLNWSFLDTGFVEVPDLPLEKTSELADLYFDEIGFEDDIGLMFETSIEGGDSKEDLNVGKMEMNNAPSPSSSSIITNSVSCEKDEIVGFC | 395 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 10751404 | 10760837 | - | CmoCh18G009730.1 | Cmo18g00973 | 402746 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00973 | 395 | SUPERFAMILY | DNA-binding domain | 82 | 138 | IPR016177 | GO:0003677 | |
Cmo18g00973 | 395 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 6 | 358 | - | - | |
Cmo18g00973 | 395 | ProSiteProfiles | AP2/ERF domain profile. | 83 | 137 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g00973 | 395 | PRINTS | Ethylene responsive element binding protein signature | 213 | 233 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g00973 | 395 | PRINTS | Ethylene responsive element binding protein signature | 84 | 95 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g00973 | 395 | MobiDBLite | consensus disorder prediction | 1 | 80 | - | - | |
Cmo18g00973 | 395 | MobiDBLite | consensus disorder prediction | 62 | 80 | - | - | |
Cmo18g00973 | 395 | SUPERFAMILY | DNA-binding domain | 172 | 233 | IPR016177 | GO:0003677 | |
Cmo18g00973 | 395 | CDD | AP2 | 83 | 138 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g00973 | 395 | Gene3D | AP2/ERF domain | 83 | 139 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo18g00973 | 395 | Gene3D | AP2/ERF domain | 172 | 233 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo18g00973 | 395 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cmo18g00973 | 395 | ProSiteProfiles | AP2/ERF domain profile. | 173 | 231 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g00973 | 395 | CDD | AP2 | 172 | 233 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g00973 | 395 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 | 6 | 358 | - | - | |
Cmo18g00973 | 395 | SMART | rav1_2 | 83 | 143 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g00973 | 395 | SMART | rav1_2 | 173 | 237 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g00973 | 395 | Pfam | AP2 domain | 172 | 223 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo18g00973 | Cmo-Chr18:10751404 | Cmo17g00881 | Cmo-Chr17:8019784 | 3.11E-81 | dispersed | |
Cmo18g00973 | Cmo-Chr18:10751404 | Cmo04g01529 | Cmo-Chr4:7814003 | 4.31E-162 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11537 | PF00847 | AP2 | 1.90E-11 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00973 | - | - | csv:101206349 | 478.789 |