Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00982 ATGGGATACTTCAGATTGCTTTATGAAACGGGCATCGAGTTTAGTGAAGAAGACCTACTTGCTGCAATTGTGCCGTTAATGAAGCTTCTCTGCCTCGCAGTAATTGGATTGATTCTTGCTCATCCAAAGACAAAAATCATCCCAAAAGAAACATTTAGCCTGCTTTGCAAACTTGTTTTTGCCTTGTTCTTGCCCTGCCTGATTTTTACTGAACTAGGCCAAAGTATTACGCTCGAAAGTGTTACTCAGTGGTGGTTTATCCCAGTAAATGTACTACTCAGCACGGCTATCGGCTGTGCTCTTGGGTATTTAGTGGTTGCTCTATGTCATCCACCCCCTGAGTTTAATAGATTGACTGTTGTTATGACAGCATTTGGTAATACAGGAAACCTCGCTCTTGCAGTTGTGGGGTCAGTTTGCCACACTGCAGATAACCCTTTTGGACCAAATTGTCACTCTAGTGGGGTGACTTACGTCTCACTTGCTCAATGGGTTTCGGTCATTCTGGCCTATACCCTCGTTTATCACATGATGAAACCTCCACCTGAGTGCAATGTAATTTTAGATGAAGGCATTGAAATTGTAGAAGAACGAGCTGATAATGATTTGAGCAGGCCTCTCCTTGCAGAAGCTGAATGGCCAAGCATTGAGGACAAAGAAACAGAACATTCCATGACATCCTTCATCCCTAGAATTCTCAATAGCATTTCAACTACACCGCAGACCACTTCTACTGATATCGAAATCTCAGGAGGGGGCGACTGTACTGACAATCCCAAGCCTAATGATATCGAACTTGCAGGGGACAACAGGACTAACAGTCCCAAATCCACCGAGTTCTTGGCTGAGCCGAGAGTAGTGAGGAGGCTGAGCCATGTTGCTGAGCAAACTCCAATACAGCACATCCTTCAACCCCCAACAATTGCTTTTCTAGCAGCCATCATTATTGGGCTAATTCCACCACTGAAATCGCTCTTCTTTGACTATAATGCTCCATTATCAGTTGTCAAAGACAGTCTAGAAATTCTAGCCCGTGCTACCGTGCCTTCTGTTATGCTCATTCTTGGGGGCTTGCTTGCAGAATGCTCAAACACATCTACACTAGGCCATCGAACCACAATCGGTATAATCACAGCAAGGCTCTTGGTCCTCCCCGTGTTGGGAATTGGGATGGTCTTGTTGGCTGATAAACTGAATTTTCTTGTTTCTGGGGATCAAATGTACAGATTTGTGCTTCTGTTACAATACACTACCCCAAGTGCTATTTTATTGGGAGCACTAGCCAGCTTGGGAGGATATGCAATTAGAGAAGTTTCTGCACTTCTCTTCTGGCAACATATATTTGCTCTCTTCTCCCTTTCTGTCTATGTAGTTATATATTTCAAGTTAGTATCATACGTTTGA 1404 43.73 MGYFRLLYETGIEFSEEDLLAAIVPLMKLLCLAVIGLILAHPKTKIIPKETFSLLCKLVFALFLPCLIFTELGQSITLESVTQWWFIPVNVLLSTAIGCALGYLVVALCHPPPEFNRLTVVMTAFGNTGNLALAVVGSVCHTADNPFGPNCHSSGVTYVSLAQWVSVILAYTLVYHMMKPPPECNVILDEGIEIVEERADNDLSRPLLAEAEWPSIEDKETEHSMTSFIPRILNSISTTPQTTSTDIEISGGGDCTDNPKPNDIELAGDNRTNSPKSTEFLAEPRVVRRLSHVAEQTPIQHILQPPTIAFLAAIIIGLIPPLKSLFFDYNAPLSVVKDSLEILARATVPSVMLILGGLLAECSNTSTLGHRTTIGIITARLLVLPVLGIGMVLLADKLNFLVSGDQMYRFVLLLQYTTPSAILLGALASLGGYAIREVSALLFWQHIFALFSLSVYVVIYFKLVSYV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10809296 10810699 + CmoCh18G009820.1 Cmo18g00982 402755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00982 467 MobiDBLite consensus disorder prediction 240 277 - -
Cmo18g00982 467 Pfam Membrane transport protein 23 457 IPR004776 GO:0016021|GO:0055085
Cmo18g00982 467 PANTHER AUXIN EFFLUX CARRIER FAMILY PROTEIN-RELATED 8 464 - -
Cmo18g00982 467 PANTHER PROTEIN PIN-LIKES 2 8 464 IPR039305 GO:0080162
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00982 K24139 PILS, ECM3; auxin efflux carrier family protein - egr:104453733 624.009
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo15g00991 Cmo18g00982 CCT
Cmo15g00991 Cmo18g00982 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01337 Cmo-Chr16:9436664 Cmo18g00982 Cmo-Chr18:10809296 7.62E-48 dispersed
Cmo16g01338 Cmo-Chr16:9440379 Cmo18g00982 Cmo-Chr18:10809296 1.55E-55 dispersed
Cmo15g00991 Cmo-Chr15:5324205 Cmo18g00982 Cmo-Chr18:10809296 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g401 . . . . . . Bma14g01581 . . Cmo18g00982 . Cma18g00978 . Car18g00897 . Cpe09g00339 . . . . . . . . . . . . . . . Cone13ag0778 Cone19ag0781 . . . . . . . . . . . . . . . . Cmo15g00991 . Cma15g00951 . Car15g00895 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004273 1 1 0 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 2 3 3 1 2 2 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00982 Cmo_Chr18 FPKM 26.952888 28.734632 29.648918 28.173862 19.56216 23.839075 20.834547 0.656144 0.662397 0.47778