Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00994 ATGGAGAACGGGAAGCAAGGCGCCGTGGAAGAGATTTTGCTGCCGAAGCAGAAGGAAAGCAATCTCTCGAGGGAAGCTTTTGTTGAAGAGGTGAAGAGAGTGGGATTCTTGGCGGCGCCGATGGTTGCCGTTACTTTGTCGCAGTTTTTGTTGCAGATGGTGACGATGATGATGGTCGGTCATCTTGGAGAACTTGCTCTCTCCAGCAGCGCCGTAGCCATTTCCATTTCTGGAGTTACAGGCTTCAGTGTTCTCTTGGGTTTGTCCAGCGCCCTCGAAACTCTATGTGGACAAGCTTATGGAGCTCGGCAATATCAAAAACTTGGAACTCAGACCTACACTGCTATATTTTGCATCTTCTTATTTTCCATTCCTATATCCCTATCATGGATTTTCTTGGAAAAGCTACTTATCTTCTTTGGTCAAGATCCTCGGATTTCGCACGAAGCTGGGAAGTTCATTGTTTGGCTGATTCCTGCGCTCTTTGCTTGTGCATTTCTTCAACCATTGGCTGAACTCAGAAATCTGGGAGGAGCATTAGCTATGAGTTTGTCATATTGGCTGAACGTGATTTTGCTAGCATTATACATGATATTTTCACCTAAGTGTGCGACAACCCGTGGAGTCATTTCTATGGAGATGTTTCGAGGAATTCAGGAGTTCTTTAGCTTGGCCATTCCTTCTGCGGTGATGGTTTGCCTCGAATGGTGGTCATTTGAGCTGCTTATCTTACTTTCAGGGTTGTTACCGAATCCGGAGCTTGAAACTTCAGTTTTATCTGTTTGGTACGTCTGCTCTATCACATATCTCAATACAATTGCTACACTTTATTCGATACCATATGGACTTGGTGCTGCAGGAAGGTATGCTATAGAGATGTGGACATGTGCTGGGAATCCGCAAGCGGCTCGTCGGGCAACAAGCGTTGCTATATTCCTCGGCGTTGTGGAAACCTCAATATTGACATCAACCCTTTTTGCTCTTCGTCGTGTCTTTGGTTATGCTTTTAGCAATGAGAAGGATGTTGTGGATTATGTGGCCTCCATGGCACCTCTGGTTTGCTTATCCGTGATATTCGACAGTATCCAGGGAGTCCTTTCAGGTGTTGCTAGAGGATGTGGATGGCAGCACATTGGTGCTTATGTAAACTTGGGGGCCTTCTATCTTTGTGGGGTTCCAGTTGCTGCAATTCTTGCTTTCTTGGTGCACCTGAGAGGAAGAGGCCTTTGGATTGGTATACAAACTGGGGCTTTTGTGCAAACGGCGTTGCTCTCCTTCATTACCAGCCGGATAAATTGGGAAGAACAGGCAATCGTAAAACCCCATCTTTCCGTCTCCGACTCTCTCAGAGCTTCATCACTCTGTCAATCAAGTTCCCAATCTCAGAGAAGACACTCACCGATTGTGATGGGGAAAGCGGATAAAGAGCGACTCATCCGAACTCTCAATTCACATCTGAATACCATCCATGAAACTTTTCAGATGTTGGATCAAAATCCATCTTCTTCCCTTGAAAACGTGAAGTGGGAGGATGTTGTAAAAATGGGCGACCAAGTCTACAAGCAGGCGAGTGTCGCTGGAATGGTGTGGACTGGAGAAAGGCTAGAAGTTAAAGCAATTGAGGAAAACATGGCAGCTTATTTCAACATGCTGCAAGGTTTCCTCCTGGTTTCCTTTGGGAGTAAAGTGGGTGCTGGCCCTACTCTGTCTTCTGTTATCCATGCAGCTGTGAAGCAAGTAATTGATTCCAGTTTTAGGTTATGGAAGGAATCCGTCTCCTTCTATGGGTTAAATTCAGTCGCATGTTCTTGA 1812 45.75 MENGKQGAVEEILLPKQKESNLSREAFVEEVKRVGFLAAPMVAVTLSQFLLQMVTMMMVGHLGELALSSSAVAISISGVTGFSVLLGLSSALETLCGQAYGARQYQKLGTQTYTAIFCIFLFSIPISLSWIFLEKLLIFFGQDPRISHEAGKFIVWLIPALFACAFLQPLAELRNLGGALAMSLSYWLNVILLALYMIFSPKCATTRGVISMEMFRGIQEFFSLAIPSAVMVCLEWWSFELLILLSGLLPNPELETSVLSVWYVCSITYLNTIATLYSIPYGLGAAGRYAIEMWTCAGNPQAARRATSVAIFLGVVETSILTSTLFALRRVFGYAFSNEKDVVDYVASMAPLVCLSVIFDSIQGVLSGVARGCGWQHIGAYVNLGAFYLCGVPVAAILAFLVHLRGRGLWIGIQTGAFVQTALLSFITSRINWEEQAIVKPHLSVSDSLRASSLCQSSSQSQRRHSPIVMGKADKERLIRTLNSHLNTIHETFQMLDQNPSSSLENVKWEDVVKMGDQVYKQASVAGMVWTGERLEVKAIEENMAAYFNMLQGFLLVSFGSKVGAGPTLSSVIHAAVKQVIDSSFRLWKESVSFYGLNSVACS 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10851394 10862015 + CmoCh18G009940.1 Cmo18g00994 402767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00994 603 CDD MATE_eukaryotic 30 437 IPR045069 GO:0042910|GO:1990961
Cmo18g00994 603 PANTHER MULTIDRUG RESISTANCE PROTEIN 22 170 - -
Cmo18g00994 603 PANTHER MULTIDRUG RESISTANCE PROTEIN 173 475 - -
Cmo18g00994 603 Pfam Grap2 and cyclin-D-interacting 511 596 - -
Cmo18g00994 603 PANTHER PROTEIN DETOXIFICATION 173 475 - -
Cmo18g00994 603 PANTHER PROTEIN DETOXIFICATION 22 170 - -
Cmo18g00994 603 Pfam MatE 40 172 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo18g00994 603 Pfam MatE 227 396 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00994 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101213643 624.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00302 Cmo-Chr11:1456477 Cmo18g00994 Cmo-Chr18:10851394 2.07E-120 dispersed
Cmo18g00994 Cmo-Chr18:10851394 Cmo09g00848 Cmo-Chr9:4353374 8.97E-77 dispersed
Cmo10g00339 Cmo-Chr10:1527518 Cmo18g00994 Cmo-Chr18:10851394 1.45E-116 wgd
Cmo11g00301 Cmo-Chr11:1452068 Cmo18g00994 Cmo-Chr18:10851394 2.81E-123 wgd
Cmo18g00994 Cmo-Chr18:10851394 Cmo04g01548 Cmo-Chr4:7915110 1.09E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g387 . . . . . . . . . Cmo18g00994 . Cma18g00986 . . . Cpe09g00331 Cpe01g01317 Bhi07g01253 . . Lac13g0548 Hepe01g1149 . . Cla05g02262 Cam05g2432 Cec05g2449 Cco05g2495 Clacu05g2421 Cmu05g2288 Cre05g2406 . . . . Lsi04g00207 Csa05g02660 Chy10g01191 Cme10g00211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001043 2 6 4 2 3 1 0 1 1 2 0 1 2 3 3 2 1 3 3 1 3 1 4 6 6 3 3 7 5 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00994 Cmo_Chr18 FPKM 63.581318 68.193382 32.464657 34.520718 12.0927 13.366261 10.484969 153.9534 145.900055 133.821198