Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01004 ATGTTTTGTTCCCCTCTCGAACCGATGAAAGCTTTCAAACGCCCTGCTCTTCGGCCGCCATCTCGTCTTTCCCTTCCAGACGCGAGCTTTCTCGCGGAAAACATGGCTTCCGGCGGCGGTGAGGTTGAAGTCAAGGACGTGTTTATAGGAGCAGGCTGTAACAGAATAGTGAACAACGTTTCTTGGGGAGCCTGTGATTTGGTGGCTTTTGGCGCTCAAAACGCCGTCGCTATTTTCTGTCCCAAGTCTGCACAAATATTGACGACTCTTCCCGGTCACAACGCGTCTGTAAACTGCACTCATTGGCTTCCAAGTAGCAAGTTTGCGTTCAGAGCAAAGCATTTGAACTGTCATTATCTGCTTTCTGGTGATTCTGATGGTGTCATTCATTTATGGGAATTTTCGCTTCTGAACCAGAAGTGGAGAAATGTTTTACAACTACCAAAATCACACAAGAAAGGCGTCACATGTATTACTGCACATATAATTTCTGAAACCGCCGCAATTGTTGCGTCTTCTTCTTCAGATGGTTCAGTTTGTGTCTGGGAGGTTTCTTTTCCGTCTACCAATGAAGGTGATTGTACATTGCTGTTGCTTGACACACTCTTGGTTGGTTCAAAATCTATGGTGGCACTTTCATTAGCAGAGTTGCCTGGAAATGCCAATCATATGGTCTTGGCAATGGGAGGTTTGGATAATAAGATTCATCTATATTGTGGGAAGAGAACTGGAGAGTTTGTCAAGGCATGTGAGCTAAAAGGACACACGGATTGGATTAGAAGTCTGGACTTCTCTTTGCCCATGTGCAAAACTGGAGAAGAAAATAGCATTATGCTTGTAAGTTCATCTCAGGACAGAGGCATACGCATATGGAAGATGGTTCTTCATGGTTCTTTGGCCAACATGAATGGAGGATGCAAAAAAGAGGAAATAAGTTTAACATCTTATATACAAGGTCCTATATTTACTTCTGGACCATCAACTTACCAGGTATCATTAGAATCTCTTTTGATTGGACATGAGGATTGGGTATATTCGGTCCAATGGCAGCCTCCTTCAGCAGCAGAAACAGAAGGGGTTCCCTGCTATCAATCTGAAAGCATCTTATCTGCATCTATGGACAAGACAATGATGATTTGGAAACCTGAAAAGACTTCTGGGATCTGGATGAATGTGGTTACTGTTGGAGAGTTAAGTCATTCTGCTTTAGGGTTTTATGGTGGGCATTGGAGCCCTAACGGAGATTCAATTTTAGCACATGGTTATGGTGGGTCTTTTCATCTCTGGAGGGATGTTGGTATCAGTTCAGGTAACTGGAAACCTCAAAAGGTTCCCTCAGGACACTTTGCAGCTGTAATGGATATTTCATGGGCCAGATCTGGTGATTATTTTGTTTCAGTCAGTCATGACCAGACAACTCGGATTTTTTCTCCCTGGAAAAATGTAAATTCTCTTGAAGAAGGTTCTTGGCATGAAATAGCTCGACCTCAAGTCCATGGGCATGATATTAATTGTGTCACCTTAATTCAAGGAAAGGGGAACCATCGCTTTGTCAGTGGAGCAGAAGAGAAAGTTGCTAGAGTCTTTGAAGCTCCATTATCTTTTCTAAAGACATTGAGTCATGCCACACTGCAGAATTTTGTGGCCACGGAAGATCATCTTGTGGATGTTCAGATTTTGGGCGCTAATATGTCGGCTCTTGGGCTCTCACAGAAACCTATTTATGTTCACTCTGCTAATAAGACTCCGGACAGGAGTGGAAATGAAGGTCTTGACACCCTTGAAACCATTCCCGATGCAGTTCCTGTTGTTCTGACTGAACCTCCCATTGAAGATCAACTAGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGGTCATGGAAATGAGCTATTTTCTCTTTGTTGTGATCACAAGGGGAAGCTTGTTGCTTCATCCTGTAAGGCACAAACTGCATCAGTAGCAGAAATATGGCTTTGGGAAGTTGGTTCGTGGAAGGCAGTTGGTCGTCTGCAATCGCACAGCTTAACAATAACACAAATGGAGTTTTCCCGTGATGACAGCATGCTGTTGGCAGTCTCAAGGGATCGCCAGTTTTCTGTTTTTAAAATCCAGAGAACAGGCTCTGACGAAATCCACCATGAGCTTATATCAAGGCAGGAGGCACACAGAAGAATCATATGGTCATGTTCTTGGAATCCATTTGGTCATGAGTTCGCAACAGGCTCTAGGGATAAGACTGTGAAGTTATGGACTGCGACACCTGATTATTCTTCAGTGAAGCAACTAGCAACTTTGTCACAGTTCAAATCTAGCGTCACCGCCTTATCGTGGGTCGGTCTTGATCCTGAGAGCAATGGACTCCTTGCAGTTGGAATGGAAAATGGCCTCCTTGAGCTGTGGAGTTTATCTATCAAAAGAACCGAAGGAGTTAGCTCAAATGTGGTTGCTTCAGTCGTAAAACGTCTCGATCCATTTGTGTGCCACGTTTCCTCGGTCAACCGTTTGTCATGGAGGGAACCAGAGGAGGAGATCGAAGAGTGCAGGAAGCTGCAGCTTGCTTCCTGTGGAGCTGACCACTGTGTTAGAGTGTTTGAGGTAAAAGTTTCTGTATGA 2622 44.2 MFCSPLEPMKAFKRPALRPPSRLSLPDASFLAENMASGGGEVEVKDVFIGAGCNRIVNNVSWGACDLVAFGAQNAVAIFCPKSAQILTTLPGHNASVNCTHWLPSSKFAFRAKHLNCHYLLSGDSDGVIHLWEFSLLNQKWRNVLQLPKSHKKGVTCITAHIISETAAIVASSSSDGSVCVWEVSFPSTNEGDCTLLLLDTLLVGSKSMVALSLAELPGNANHMVLAMGGLDNKIHLYCGKRTGEFVKACELKGHTDWIRSLDFSLPMCKTGEENSIMLVSSSQDRGIRIWKMVLHGSLANMNGGCKKEEISLTSYIQGPIFTSGPSTYQVSLESLLIGHEDWVYSVQWQPPSAAETEGVPCYQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHSALGFYGGHWSPNGDSILAHGYGGSFHLWRDVGISSGNWKPQKVPSGHFAAVMDISWARSGDYFVSVSHDQTTRIFSPWKNVNSLEEGSWHEIARPQVHGHDINCVTLIQGKGNHRFVSGAEEKVARVFEAPLSFLKTLSHATLQNFVATEDHLVDVQILGANMSALGLSQKPIYVHSANKTPDRSGNEGLDTLETIPDAVPVVLTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGKLVASSCKAQTASVAEIWLWEVGSWKAVGRLQSHSLTITQMEFSRDDSMLLAVSRDRQFSVFKIQRTGSDEIHHELISRQEAHRRIIWSCSWNPFGHEFATGSRDKTVKLWTATPDYSSVKQLATLSQFKSSVTALSWVGLDPESNGLLAVGMENGLLELWSLSIKRTEGVSSNVVASVVKRLDPFVCHVSSVNRLSWREPEEEIEECRKLQLASCGADHCVRVFEVKVSV 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10947226 10955408 - CmoCh18G010040.1 Cmo18g01004 402777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01004 873 PRINTS G protein beta WD-40 repeat signature 741 755 IPR020472 -
Cmo18g01004 873 PRINTS G protein beta WD-40 repeat signature 279 293 IPR020472 -
Cmo18g01004 873 PRINTS G protein beta WD-40 repeat signature 170 184 IPR020472 -
Cmo18g01004 873 Gene3D - 717 872 IPR015943 GO:0005515
Cmo18g01004 873 PANTHER WD REPEAT-CONTAINING 41 871 - -
Cmo18g01004 873 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 293 IPR001680 GO:0005515
Cmo18g01004 873 SUPERFAMILY WD40 repeat-like 719 869 IPR036322 GO:0005515
Cmo18g01004 873 SMART WD40_4 666 705 IPR001680 GO:0005515
Cmo18g01004 873 SMART WD40_4 619 663 IPR001680 GO:0005515
Cmo18g01004 873 SMART WD40_4 330 381 IPR001680 GO:0005515
Cmo18g01004 873 SMART WD40_4 140 183 IPR001680 GO:0005515
Cmo18g01004 873 SMART WD40_4 821 868 IPR001680 GO:0005515
Cmo18g01004 873 SMART WD40_4 438 477 IPR001680 GO:0005515
Cmo18g01004 873 SMART WD40_4 761 804 IPR001680 GO:0005515
Cmo18g01004 873 SMART WD40_4 489 530 IPR001680 GO:0005515
Cmo18g01004 873 SMART WD40_4 715 754 IPR001680 GO:0005515
Cmo18g01004 873 SMART WD40_4 83 133 IPR001680 GO:0005515
Cmo18g01004 873 SMART WD40_4 391 430 IPR001680 GO:0005515
Cmo18g01004 873 SMART WD40_4 245 292 IPR001680 GO:0005515
Cmo18g01004 873 Gene3D - 434 570 IPR015943 GO:0005515
Cmo18g01004 873 Gene3D - 303 433 IPR015943 GO:0005515
Cmo18g01004 873 Gene3D - 60 302 IPR015943 GO:0005515
Cmo18g01004 873 PANTHER ELONGATOR COMPLEX PROTEIN 2 41 871 - -
Cmo18g01004 873 SUPERFAMILY WD40 repeat-like 83 478 IPR036322 GO:0005515
Cmo18g01004 873 Gene3D - 574 715 IPR015943 GO:0005515
Cmo18g01004 873 ProSiteProfiles Trp-Asp (WD) repeats profile. 722 753 IPR001680 GO:0005515
Cmo18g01004 873 SUPERFAMILY WD40 repeat-like 367 759 IPR036322 GO:0005515
Cmo18g01004 873 Pfam WD domain, G-beta repeat 85 132 IPR001680 GO:0005515
Cmo18g01004 873 Pfam WD domain, G-beta repeat 724 753 IPR001680 GO:0005515
Cmo18g01004 873 Pfam WD domain, G-beta repeat 147 182 IPR001680 GO:0005515
Cmo18g01004 873 Pfam WD domain, G-beta repeat 439 476 IPR001680 GO:0005515
Cmo18g01004 873 Pfam WD domain, G-beta repeat 337 381 IPR001680 GO:0005515
Cmo18g01004 873 Pfam WD domain, G-beta repeat 251 292 IPR001680 GO:0005515
Cmo18g01004 873 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 722 753 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01004 K11374 ELP2; elongator complex protein 2 - csv:101209018 1533.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01004 Cmo-Chr18:10947226 Cmo03g00906 Cmo-Chr3:6970358 1.41E-07 dispersed
Cmo18g01004 Cmo-Chr18:10947226 Cmo14g00301 Cmo-Chr14:1391941 1.94E-06 transposed
Cmo18g01004 Cmo-Chr18:10947226 Cmo06g00473 Cmo-Chr6:2294827 5.12E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01004 Cmo_Chr18 FPKM 5.130252 4.956438 1.043033 1.044731 17.460007 15.589854 15.965433 0.178702 0.197438 0.31912