Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01006 ATGGAAAACCCTCCTTCCATCTCCTTCATCTTTCTCCTGTGCAACTTCTGTCTTTCAATGGCGGCTTTGAACGACGAGGGCACCGCCCTTTTCTCCTTCAAACAGTTCATCACAGAAGACCCAGAAGCCTCCCTCAGCAACTGGAATTCTTCAGATCAAAACCCTTGTTCTTGGAATGGCGTTACATGCAATGATCTAAGAGTCGTTTCCCTTAGTATTCCCAAGAAGAATCTCAAAGGGATTCTCCCTTCTTCGTTGGGGATTCTTTCTCACCTTCGCCATGTGAATCTAAGGAACAATAAACTCCATGGAACTCTGCCATTGGAGCTTTTCCAAGCTAATGGAATACAGAGCTTGGTGATTTTTGGGAATTCCTTTTCTGGGTTTGTCCCAAATGATGTTGGTAAGCTCAAAAACCTTCAAATCTTGGATTTATCTCATAATTTCTTTAATGGGTCGTTGCCTGTTTCGTTGATTCAATGCACAAGACTTAGAGTTCTTGATATTAGTCACAATAATCTTACCAATGCTTTGCCTGTTGGATTTGGTTCTAGTTTGAATTTCTTGGAAAAATTGGATGTTTCTCACAATATGTTCAATGGTTCAATCCCTATGGATATTGGTAATCTCTCTAGCTTGCAAGGAACTGTTGATTTCTCATATAATTTGTTCTCTGGTTCAATCCCTGCTAGCTTAGGAAACCTTCCTGAAAAGGTTTATATTGATCTTAGTTATAATGATTTGAGTGGTTCAATACCCCAAAATGGTGCTCTTATGAACAGAGGACCTACTGCTTTCATTGGTAATCCTGGTCTTTGTGGACCTCCATTGAAGAATCCGTGTTCTTCGGAAGCTCCAGGCGCGAGTTCGCCATCGTCTTTCCCGTTTTTCCCGGATAACTCTCCACCTGGGAGGTCTGAGGGTAATGGAGGGTTGAGTAGGAGCACGTTGGTTGCGATAATCGTCGGCGACATTATCGGTATCTGTCTGATTGGGTTGCTGTTTTCGTATTGCTATTCGAGGTTTTGGACTCGTAGAAATGGGAAGAAGGTAGAGCAATCTAAAGATGGTCTTCATAAGGGAGAGAAAGGAAGAAAGGATTGTCTCTGCTTTCGAAAGGGTGAATCCGAGAATGTTTCGGAGCATGTACAGCAGTTTGATCTTGTAGCTCTCGATTCAAACGTGACGTTTGATCTCGATGAACTTCTTAAGGCGTCGGCGTTCGTTTTGGGGAAAAGTAGTATCGGGATAGTGTATAAAGTCGTGCTCGAAAATGGTCTCACTTTAGCTGTGAGAAGATTGGGTGAAGGAGGTTCACAAAGGTTTAAAGAGTTTCAAACTGAAGTTGAAGCAATTGGGAAGCTAAGGCATCCAAATGTTGTTGGCCTTAGAGCTTATTATTGGTCTGTTGATGAAAAACTGCTTATTTATGATTACATATCAAATGGGAGCCTTGCATTTGCCATTCATGGGAAGCCCGGGACATCGTCGTTTACACCGTTACCGTGGTCTGTTCGGTTAAGAATCATGGAAGGTATTGCAAAAGGGTTGGTTTACTTGCATGAGTTTAGCCCCAAAAAGTATGTCCATGGCAATTTGAAGACGAACAATGTACTTCTCGGACACAACATGGTTCCTCATATTTCGAATTTCGGGCTTGCTCGACTTGTTAACATCACTGGAGGATCTCCGACTCTGCAATCGGGTCACTTGACAGACGAAAAACCCCACGAGAAACAGCTTAAGTCTGCAACTTCTGAAGCTAGTACATTCAGTTCTAATATGAATACTTACTACCAAGCCCCAGAAGCTTTAAAGGTCGTGAAGCCATCGCAGAAATGGGACGTTTACTCGTTCGGTGTGATATTACTCGAAATGATCACCGGAAGGTTACCGATAGTTCAGGTTGGAGCGTTGGAGATGGATCTTGTTCAATGGATTCAACTCTGCATTGAGGAAAAGAAGCCGCTTTCGGATGTTATAGATCCGTCTTTGACACCGGACGACGATACAGACGAGGAGATTATCACGGTTTTGAAGATATCTTTAGCTTGTGTTCAAAATAGTCCCGAAAGAAGACCGACGATGAGACATGTTTCTGATGCGTTGAGTAGGATGATTGTGAATCCAAAGTGA 2136 42.74 MENPPSISFIFLLCNFCLSMAALNDEGTALFSFKQFITEDPEASLSNWNSSDQNPCSWNGVTCNDLRVVSLSIPKKNLKGILPSSLGILSHLRHVNLRNNKLHGTLPLELFQANGIQSLVIFGNSFSGFVPNDVGKLKNLQILDLSHNFFNGSLPVSLIQCTRLRVLDISHNNLTNALPVGFGSSLNFLEKLDVSHNMFNGSIPMDIGNLSSLQGTVDFSYNLFSGSIPASLGNLPEKVYIDLSYNDLSGSIPQNGALMNRGPTAFIGNPGLCGPPLKNPCSSEAPGASSPSSFPFFPDNSPPGRSEGNGGLSRSTLVAIIVGDIIGICLIGLLFSYCYSRFWTRRNGKKVEQSKDGLHKGEKGRKDCLCFRKGESENVSEHVQQFDLVALDSNVTFDLDELLKASAFVLGKSSIGIVYKVVLENGLTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNVVGLRAYYWSVDEKLLIYDYISNGSLAFAIHGKPGTSSFTPLPWSVRLRIMEGIAKGLVYLHEFSPKKYVHGNLKTNNVLLGHNMVPHISNFGLARLVNITGGSPTLQSGHLTDEKPHEKQLKSATSEASTFSSNMNTYYQAPEALKVVKPSQKWDVYSFGVILLEMITGRLPIVQVGALEMDLVQWIQLCIEEKKPLSDVIDPSLTPDDDTDEEIITVLKISLACVQNSPERRPTMRHVSDALSRMIVNPK 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10958254 10960935 - CmoCh18G010060.1 Cmo18g01006 402779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01006 711 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Cmo18g01006 711 ProSiteProfiles Protein kinase domain profile. 404 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01006 711 MobiDBLite consensus disorder prediction 567 588 - -
Cmo18g01006 711 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 709 - -
Cmo18g01006 711 Pfam Leucine Rich Repeat 139 157 IPR001611 GO:0005515
Cmo18g01006 711 Gene3D Ribonuclease Inhibitor 17 75 IPR032675 -
Cmo18g01006 711 Gene3D Ribonuclease Inhibitor 76 284 IPR032675 -
Cmo18g01006 711 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 6 709 - -
Cmo18g01006 711 Gene3D Phosphorylase Kinase; domain 1 372 479 - -
Cmo18g01006 711 Gene3D Transferase(Phosphotransferase) domain 1 480 710 - -
Cmo18g01006 711 SUPERFAMILY Protein kinase-like (PK-like) 409 703 IPR011009 -
Cmo18g01006 711 MobiDBLite consensus disorder prediction 283 309 - -
Cmo18g01006 711 SUPERFAMILY L domain-like 24 278 - -
Cmo18g01006 711 Pfam Protein kinase domain 410 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01006 711 SMART LRR_typ_2 162 184 IPR003591 -
Cmo18g01006 711 SMART LRR_typ_2 89 113 IPR003591 -
Cmo18g01006 711 SMART LRR_typ_2 137 161 IPR003591 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02173 Cmo18g01006 CCT
Cmo04g01562 Cmo18g01006 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01922 Cmo-Chr4:9813402 Cmo18g01006 Cmo-Chr18:10958254 0 dispersed
Cmo18g00696 Cmo-Chr18:8827292 Cmo18g01006 Cmo-Chr18:10958254 0 dispersed
Cmo18g01006 Cmo-Chr18:10958254 Cmo20g00981 Cmo-Chr20:5488146 1.96E-134 dispersed
Cmo15g00059 Cmo-Chr15:342965 Cmo18g01006 Cmo-Chr18:10958254 0 transposed
Cmo18g01006 Cmo-Chr18:10958254 Cmo04g01562 Cmo-Chr4:7987916 0 wgd
Cmo18g01006 Cmo-Chr18:10958254 Cmo04g02173 Cmo-Chr4:15831220 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75074 PF00069 Pkinase 2.20E-28 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01006 - - cpep:111801478 1328.92