Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01013 ATGCTATTATTTGCTCTTTGGTACTGCAAAAAAAGGCGTGCTGCTCCAACAATGCTAACAAGGAATATATCTTGTGAACCCTACTCAAAATTCGACCTGGAAGATGGTGGCGTGTGCTTTGAAGTTCCTGTTTTCTCATATGGCGAACTTGAAATGGCCACTAACAAATTTGATCGTGATAAAGAACTTGGAGATGGTGGTTTTGGAACCGTATACCATGGGAAACTCCTTGATGGCCGGGAAGTTGCCGTGAAGCGCCTATATCAACATAACTATAGACGAGTAGAGCAATTCATGAATGAGGTTAAAATTCTCACCCGCCTTCGCCATAAAAATCTGGTCTCCCTTTATGGATGCACTTCAAAACGCAGTCGTGAACTTCTTCTTGTTTATGAATTTGTCGCAAATGGTACTGTTGCTGATCATCTTCATGGCGAACAAGCAAGTTTTAGCTTGCTCACATGGCCTATTCGGATGTCCATCGCTATTGAAACAGCAAGTGCTCTAGTTTATCTCCACGCTTCTGAAATCATTCATCGTGATGTGAAGACTACTAACATTCTCTTGGACAGTAATTTTTCCGTCAAAGTCGCTGATTTTGGTCTCTCTAGACTATTCCCAAACGACGTTAGTCATGTCTCGACTGCTCCTCAAGGCACCCCTGGTTACGTTGATCCTGAGTATTATCAGTGTTATCAGCTTACAACCAAGAGCGATGTTTATAGTTTTGGTGTCGTCTTAATCGAGCTTATATCGTCAATGCCAGCTGTTGATATAACAAGGCATCGGCACGAGATTAATTTGTCTAACTTAGCAGTGGACAAAATTTTAAGACAGGAAATTGATGAGCTGATTGATCCATGCCTCGGGTATCAATCAGACGAAAAGGTTCGACGCATGATATTGGCAGTGGCTTGGCTAGCTTTTCTATGTCTGCAGCAAGACAAGGAAAGGAGACCAACAATGGAAGAAGCGCTGGAAACTTTAAAGAGGATTGAGAGTGGGGAAGAAAGCGAGAATTTGCAGGATAATAGTGCACTGTCGAAGAGCTATGATCCAGCTCCTTCTCCAGAGTATGATGAAGTTGAATTGTTGAAGAATAAGAGGCAGCAGCTGTTGTCCCCTACTTCTGTTGCTGATAAATGGATCAGCTCAACCTCATTTGTTAGTGCTTCTACTTCTCTATCATCTATTTCCTAA 1200 42.25 MLLFALWYCKKRRAAPTMLTRNISCEPYSKFDLEDGGVCFEVPVFSYGELEMATNKFDRDKELGDGGFGTVYHGKLLDGREVAVKRLYQHNYRRVEQFMNEVKILTRLRHKNLVSLYGCTSKRSRELLLVYEFVANGTVADHLHGEQASFSLLTWPIRMSIAIETASALVYLHASEIIHRDVKTTNILLDSNFSVKVADFGLSRLFPNDVSHVSTAPQGTPGYVDPEYYQCYQLTTKSDVYSFGVVLIELISSMPAVDITRHRHEINLSNLAVDKILRQEIDELIDPCLGYQSDEKVRRMILAVAWLAFLCLQQDKERRPTMEEALETLKRIESGEESENLQDNSALSKSYDPAPSPEYDEVELLKNKRQQLLSPTSVADKWISSTSFVSASTSLSSIS 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10980597 10982305 + CmoCh18G010130.1 Cmo18g01013 402786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01013 399 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Cmo18g01013 399 SMART serkin_6 57 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01013 399 CDD STKc_IRAK 63 332 - -
Cmo18g01013 399 Gene3D Transferase(Phosphotransferase) domain 1 134 354 - -
Cmo18g01013 399 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 3 384 - -
Cmo18g01013 399 Pfam Protein kinase domain 58 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01013 399 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 3 384 IPR044652 -
Cmo18g01013 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Cmo18g01013 399 SUPERFAMILY Protein kinase-like (PK-like) 40 333 IPR011009 -
Cmo18g01013 399 MobiDBLite consensus disorder prediction 330 360 - -
Cmo18g01013 399 ProSiteProfiles Protein kinase domain profile. 57 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01013 399 Gene3D Phosphorylase Kinase; domain 1 33 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00055 Cmo-Chr15:310263 Cmo18g01013 Cmo-Chr18:10980597 1.60E-149 dispersed
Cmo10g00329 Cmo-Chr10:1483079 Cmo18g01013 Cmo-Chr18:10980597 6.87E-159 wgd
Cmo13g01055 Cmo-Chr13:8793129 Cmo18g01013 Cmo-Chr18:10980597 1.40E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75075 PF00069 Pkinase 2.80E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01013 - - bhj:120081441 710.294