Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo18g01015 | ATGGCTTCCAGAGAAGGGAGGCGTCGCCATCATCATCATCATAATCTGGTGCCTCTTGCTGCTTTGATCGGTAAAGAGGTGAGGAATGAGAGATTGGAGAAGCCGACTATAAGATATGGGAGTGCTGCGCAGTCTAGGAAGGGGGAGGATTATTTTCTTATGAAAACTGATTGTCAGCGAGTACCTGGGAACCCTTCATCCACTTTCTCTGTATTTGCTATATTTGATGGGCACAATGGAAATGCTGCTGCAATTTTCACCAGGGAACATTTGTTGAGCCATGTCTTAGGTGCGCTTCCTCGTGGCCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCTCGAGCTTTGGTTGCTGGATTTGTGAAGACAGACAAGGAGTTTCAAAGCCGAGGTGAAACTTCTGGAACTACAGCTACGTTTGTAATCATCGATGGATGGACAGTGACAGTAGCGTCGGTTGGAGACTCTCGATGTGTTTTAGATACTCAGGGTGGTGCTGTCTCTGCGTTAACGATCGATCATAGACTTGAAGATAATGTTGAAGAGCGAGAACGTGTGACCGCCAGCGGCGGGGAGATCGGAAGATTAAGCATTGTTGGTGGTGCTGAGGTGAAGCAAATCGGTCCGCTCCGGTGTTGGCCTGGAGGCTTATGCCTTTCTCGATCGATCGGAGACAGGGACGTTGGAGAGTTTATAGTTCCCATTCCATTTGTTAAACAAGTGAAGTTATCAACTGCTGGTGGGAGGCTTATAATTGCTTCTGATGGCATCTGGGACGCCCTATCATCGGATATGGCTGCGAAGTCCTGCCGTGGACTACCGGCCGAGCTCGCTGCTAGGCAAGTCGTGAAGGTAATTTAA | 861 | 49.25 | MASREGRRRHHHHHNLVPLAALIGKEVRNERLEKPTIRYGSAAQSRKGEDYFLMKTDCQRVPGNPSSTFSVFAIFDGHNGNAAAIFTREHLLSHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCVLDTQGGAVSALTIDHRLEDNVEERERVTASGGEIGRLSIVGGAEVKQIGPLRCWPGGLCLSRSIGDRDVGEFIVPIPFVKQVKLSTAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKVI | 286 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 10985698 | 10987591 | + | CmoCh18G010150.1 | Cmo18g01015 | 402788 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo18g01015 | 286 | ProSiteProfiles | PPM-type phosphatase domain profile. | 31 | 286 | IPR001932 | - | |
| Cmo18g01015 | 286 | SMART | PP2C_4 | 28 | 286 | IPR001932 | - | |
| Cmo18g01015 | 286 | Pfam | Protein phosphatase 2C | 64 | 271 | IPR001932 | - | |
| Cmo18g01015 | 286 | PANTHER | PROTEIN PHOSPHATASE 2C 15-RELATED | 7 | 284 | - | - | |
| Cmo18g01015 | 286 | CDD | PP2Cc | 37 | 284 | IPR001932 | - | |
| Cmo18g01015 | 286 | Gene3D | - | 38 | 284 | IPR036457 | - | |
| Cmo18g01015 | 286 | PANTHER | ALPHABET, ISOFORM E-RELATED | 7 | 284 | - | - | |
| Cmo18g01015 | 286 | SUPERFAMILY | PP2C-like | 44 | 284 | IPR036457 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo04g01566 | Cmo18g01015 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo11g01302 | Cmo-Chr11:8904360 | Cmo18g01015 | Cmo-Chr18:10985698 | 7.79E-157 | dispersed | |
| Cmo18g01015 | Cmo-Chr18:10985698 | Cmo01g01732 | Cmo-Chr1:12942300 | 1.08E-22 | dispersed | |
| Cmo18g01015 | Cmo-Chr18:10985698 | Cmo04g01566 | Cmo-Chr4:8006180 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo18g01015 | - | - | csv:101216777 | 524.628 |