Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01016 ATGGCGGCGGCTACATTACTGTCGCATTTCGCTCTTTGTCTTTGTTTACTCCCTTTTGCACATCTTTATGCTTCTTCGAACTCGGATTTTGACGCTTTAATGGCGTTCAAAGCGGCGTCTGATGAAGGGAATAAGCTCACCACATGGAACTCTACTTCGAACCCGTGCGCTTGGAATGGAGTGTCTTGCCTCAGAAACAGAGTCTCGAGGTTAGTTCTTGAGAATCTTGATCTTACAGGCTCTCTTGCACCTCTTACTGGTTTGACTCAGTTACGAGTGTTGAGCCTTAAGCGGAATCGTCTCTCCGGTTCCATTCCTGATTTCTCCAACTTCACCGCTCTTAAACTCGTGTTTCTCTCGTATAATCAATTTTCCGGCGATTTTCCGGCGTCTTTGATGTCTCTTGTCCGCCTCTACCGTCTTGATCTCTCTCACAATAACTTCACCGGACAGATTCCGGCCTCTGTTAACCGTTTGTCTCATCTTCTTACTCTCCGCCTCGAAGAAAACCGGTTTTCTGGTCCTGTTTTGGAACTGAACCTGCCGAATCTTCAGGATTTCAACGTTTCAGCGAATCGTCTCTCAGGTCAAATCCCTAAATCGTTGTCGACGTTTCCGGCGTCTTGTTTCGGCCAGAACTTGGGTTTGTGTGGATCTCCTCTACAGAGCTGCAATGGCATTGTTACTAACCCGACGGAACCCGGATCCGAAGGGGCCATTGCGTCCCCCATAACACCGCCGCGGAATCTAACAGTTTCATCTTCTCCGACATCGCTTCCCGGAGTTACGCCGGAAAGCACCCACCACAAAGGCACCGGGAAGATAGGTTCTCTGGCGCTAATCGCTATAATTCTCGGCGATGTATTGGTGTTGGCAGTAGTCTCGCTTCTTCTCTACTGCTATTTCTGGAGAAACTCCTCCGACAAATCCCGAGATAGGAAGGGGCCGAAGCTTCTTGAGAGCGAGAAGATCGTTTACTCGTCGAGTCCATATCCAGCTCAGGCCGGAACAGAGAGGGGTCGGATGGTGTTCTTCGAGGGAGTCAAGAAGTTCGAGCTCGAAGATTTGCTTCGAGCCTCCGCGGAAATGCTCGGAAAAGGTGGGTTCGGAACTTCATACAAAGCGATTCTCGACGACGGCAATGTCGTGGCGGTGAAACGGCTGAAAGACGCGCAGGTCGGAGGTAAACGAGAGTTTGAGCAGCACATGGAGGTGCTCGGAAGGTTGAAACATGAACATATTGTAAGCTTGAGAGCTTACTATTTTGCGAGAGAGGAGAAGCTTTTGGTTTATGATTACATGCCCAATGGCAATCTGTTCTGGCTTCTTCATGGAAACAGAGGCCCTGGACGGACGCCGTTGGATTGGACGACGAGGTTAAAGATCGCCGCCGGAGCAGCCAGAGGTCTGACCTTCATTCACAACTCCAGTAAGTTTCTCAGGCTTGTTCATGGCAATGTGAAATCCACTAACATTCTTCTGGATCAATCGGGAAATGCTCGAGTTTCCGATTTTGGACTGTCCCTTTTCACTCCCCCTTCCACTCCACGATCCAACGGCTACCGAGCGCCGGAGTGCAGCGAAGGTCGGAAACTGACGCAGAAATCCGACGTGTATTCATTTGGGGTTCTTCTTCTCGAGCTGTTAACTGGAAAGTGTCCTTCTGTGGTGGAGAATGGTGGGCCAGGAGGCGGTGGATACGGCGGCGTGCTGGATTTGCCGCGGTGGGTTCAGTCAGTGGTGCGGGAGGAGTGGACGGCGGAGGTTTTTGATTTGGAGCTGATGAGATACAAAGACATCGAAGAGGAAATGGTGGGGCTTCTGCAGATTGCATTGACTTGTACTTCGGCTTCGCCGGATCAACGGCCGAAAATGATCCATGTGGTGAAGATGATCGATGAGCTTCGTGGGGTGGAGGTGTCGCCGTTCCATGACGGCTCCGACTCGGTGACGGAGTCGCCGTCGGTGTCGGAGGGGACTTGCGGCGGCGGCGGAGGAGGAGCCAGTAGTCAGTATCATCCTGATAAGAATGTTGGGAATCCTGAGGCTACAGAACTGTTCAAGGAGGTTGCTTATTCTTACAACATTTTATCTGATCCAGAGAAGAGAAGGCAGTATGACACTGCAGGATTTGAGGCCATTGATGTGGAAGGCTCAGATATGGAAATTGACTTGTCCAATTTGGGCACTGTCAATACCATGTTTGCTGCTTTATTCAGCAAGTTGGGTGTCCCCATTAAGACTGCAATATCTGCCATTGTTCTTGAGGAAGCTCTGAATGGAACTGTGACCATTAGACCTCTTCCCATTGGAACATCAGTCAGTGGAAAGGTAGATAAACAGTGTGCTCACTTCTTTGGTGTCACAATCAATGAACAACAAGCTGCAGCAGGCATTGTTGTCAGAGTTACTTCCACTGCTCAAAGCAAATTTAAGCTGCTATATTTTGAGCAAGATACCAATGGGGGTTATGGTTTAGCCTTACAGGAGGATAGTGAGAAGACAGGCAAGGTTACATCTATTGGGATGTATTTTCTTCATTTTCAAGTATACAAGATGGATTCAACTGTTAACGCGTTGGCCATCGCCAAGGACCCTGAGGCTGCTTTTTTCAAGAGGTTGGAAGGCCTTCAGCCTTGTGAGGTCGACGAACTTCTAAAAAACCGAGATACCGTTCACTCTTCTTTCACCGTCTGCAGACCAGCGAACCATAACGACACCGGTTTAGGTAATGGAAAGGTTGATGATTCAAAAGCTTACACTTCTGGGGAAGATGGGGGCTCAGATGGGAAGGAAAAACCTACCAAGAAGAAATGGTTTAATCTAAATCTGAGATCAGACAAGAAGCTCGGTTGA 2856 49.12 MAAATLLSHFALCLCLLPFAHLYASSNSDFDALMAFKAASDEGNKLTTWNSTSNPCAWNGVSCLRNRVSRLVLENLDLTGSLAPLTGLTQLRVLSLKRNRLSGSIPDFSNFTALKLVFLSYNQFSGDFPASLMSLVRLYRLDLSHNNFTGQIPASVNRLSHLLTLRLEENRFSGPVLELNLPNLQDFNVSANRLSGQIPKSLSTFPASCFGQNLGLCGSPLQSCNGIVTNPTEPGSEGAIASPITPPRNLTVSSSPTSLPGVTPESTHHKGTGKIGSLALIAIILGDVLVLAVVSLLLYCYFWRNSSDKSRDRKGPKLLESEKIVYSSSPYPAQAGTERGRMVFFEGVKKFELEDLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAQVGGKREFEQHMEVLGRLKHEHIVSLRAYYFAREEKLLVYDYMPNGNLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLTFIHNSSKFLRLVHGNVKSTNILLDQSGNARVSDFGLSLFTPPSTPRSNGYRAPECSEGRKLTQKSDVYSFGVLLLELLTGKCPSVVENGGPGGGGYGGVLDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIALTCTSASPDQRPKMIHVVKMIDELRGVEVSPFHDGSDSVTESPSVSEGTCGGGGGGASSQYHPDKNVGNPEATELFKEVAYSYNILSDPEKRRQYDTAGFEAIDVEGSDMEIDLSNLGTVNTMFAALFSKLGVPIKTAISAIVLEEALNGTVTIRPLPIGTSVSGKVDKQCAHFFGVTINEQQAAAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQEDSEKTGKVTSIGMYFLHFQVYKMDSTVNALAIAKDPEAAFFKRLEGLQPCEVDELLKNRDTVHSSFTVCRPANHNDTGLGNGKVDDSKAYTSGEDGGSDGKEKPTKKKWFNLNLRSDKKLG 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10990716 10999687 + CmoCh18G010160.1 Cmo18g01016 402789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01016 951 PANTHER - 25 650 - -
Cmo18g01016 951 Pfam Protein tyrosine and serine/threonine kinase 362 631 IPR001245 GO:0004672|GO:0006468
Cmo18g01016 951 PRINTS DnaJ domain signature 665 680 IPR001623 -
Cmo18g01016 951 PRINTS DnaJ domain signature 702 721 IPR001623 -
Cmo18g01016 951 PRINTS DnaJ domain signature 682 702 IPR001623 -
Cmo18g01016 951 ProSitePatterns Nt-dnaJ domain signature. 687 706 IPR018253 -
Cmo18g01016 951 Gene3D DnaJ domain 667 725 IPR036869 -
Cmo18g01016 951 Gene3D Ribonuclease Inhibitor 85 227 IPR032675 -
Cmo18g01016 951 MobiDBLite consensus disorder prediction 907 938 - -
Cmo18g01016 951 MobiDBLite consensus disorder prediction 235 268 - -
Cmo18g01016 951 MobiDBLite consensus disorder prediction 918 938 - -
Cmo18g01016 951 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Cmo18g01016 951 CDD DnaJ 671 699 IPR001623 -
Cmo18g01016 951 SUPERFAMILY Chaperone J-domain 670 719 IPR036869 -
Cmo18g01016 951 SUPERFAMILY Protein kinase-like (PK-like) 362 632 IPR011009 -
Cmo18g01016 951 MobiDBLite consensus disorder prediction 246 265 - -
Cmo18g01016 951 Gene3D Ribonuclease Inhibitor 21 84 IPR032675 -
Cmo18g01016 951 ProSiteProfiles dnaJ domain profile. 603 710 IPR001623 -
Cmo18g01016 951 CDD STKc_IRAK 364 635 - -
Cmo18g01016 951 Gene3D Phosphorylase Kinase; domain 1 333 433 - -
Cmo18g01016 951 Pfam DnaJ domain 670 707 IPR001623 -
Cmo18g01016 951 SUPERFAMILY L domain-like 45 205 - -
Cmo18g01016 951 MobiDBLite consensus disorder prediction 642 680 - -
Cmo18g01016 951 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 25 650 - -
Cmo18g01016 951 ProSiteProfiles Protein kinase domain profile. 358 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01016 951 Gene3D Transferase(Phosphotransferase) domain 1 434 646 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02170 Cmo18g01016 CCT
Cmo15g00961 Cmo18g01016 CCT
Cmo04g01061 Cmo18g01016 CST
Cmo04g01569 Cmo18g01016 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00432 Cmo-Chr6:2078694 Cmo18g01016 Cmo-Chr18:10990716 9.17E-177 dispersed
Cmo07g00705 Cmo-Chr7:3176990 Cmo18g01016 Cmo-Chr18:10990716 2.43E-118 dispersed
Cmo14g00252 Cmo-Chr14:1156523 Cmo18g01016 Cmo-Chr18:10990716 1.59E-171 dispersed
Cmo18g01016 Cmo-Chr18:10990716 Cmo11g00588 Cmo-Chr11:2841086 1.58E-170 dispersed
Cmo15g00961 Cmo-Chr15:5006819 Cmo18g01016 Cmo-Chr18:10990716 3.33E-13 wgd
Cmo18g01016 Cmo-Chr18:10990716 Cmo04g01567 Cmo-Chr4:8011158 0 wgd
Cmo18g01016 Cmo-Chr18:10990716 Cmo04g02170 Cmo-Chr4:15800030 1.22E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75076 PF07714 PK_Tyr_Ser-Thr 3.20E-34 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01016 - - cpep:111802740 1267.29