Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01019 ATGGTTTGCGCCGATTCCGACCAAACAGTACTTGACTCCATGGCGATGGGACTGGAGAGATCGAAGCAGCTCCACAATTTCACCCTCCCTTTCTTAAAGTGGGGAAATCAGAAGTATCTCCGCTGTACGAAACTGGATTCCGATTGCGCCGACGCCGACGCCGACGTTCCTCCGCCAGCCGATCGCCGATCGTCGGCCGTCCGGTGGAACTGTCGGAAGTTTCAGACGGACAGGCCGCTGTGGTTGAAGGATTCCGCTAAGAGACCTAGGGCTTCAAAGTCCAAGATCCACGATAATTGCGACGGCGATGAAGGTATAGCGGCGGTGAGAGAGAAACTCATGATTGATCTAAAAACCGCCGCCGATAAGATGAAGGTTGCATTCTGGAGAGATGGAGTCGTGGATGACGAAGACGAACCGGAGAAAAAGACTCCGGCGGCGCCGGTGCCGGCGCCGGCGCCGGATAAGGATTCGAAACCGTGGAGTTTGAGGGTGAAGAAGACGGCATCGAAGACTCCGATTGATACAGTTACAGAAGGGAGAAGCGGTGAGAAGGCCTTGAAAATCAATAAGAGGTTAGATAAGCGGCCGATTCGAAACTCTCCGTTGAGAAGCGGTGATGGCGGCGGCGGCGTGAAGTCTCCTGGACGGCGATTGGTAATGGAAAAGAAAGAAAGGGAGAAATTCTCGGTATCGCTTTCCAAAAAGGAGATCGAGGAGGATTTCATGGCTATGGTGGAACGCAGGCCGCCGCGAAGGCCCAAAAAGAGGCCCAGAAATGTTCAAAATCAAATCGATACGCTCTTCCCCGGAGCATGGTTGACGGAGATAACCGCCGATCTCTACGACGTACCGGAAATCCAGAAAATCGAAAAGGCTTCCATTAACCCGATCCGATCGCCGCCTCCGGCGTTCCATTACAAGACAGCAGGACTCGCACTCCCTTCATCACTTTCCTGCACCATCAGCCGGCCGTCGCCGACATCGTTACGTCTGCGATCATCCTCAGTAACGAGAACCTCCATCTCTTCTTCATTTCAACTCAAAGCCGGAAAAGGGATGGATGGCTTCCTAGATGTTGAGCTCAAAGTTCGTGATTATGAGCTGGATCAGTTTGGGGTTGTCAACAATGCTGTTTATGCGAGTTATTGCCAACATGGTCGTCATGAACTGCTGGAAAGCATAGGCCTCAGTCCTGATGAAGTTGCTCGTGATGGCGATGCATTAGCTTTATCAGAATTGTCTTTGAAGTTCCTTGCACCACTTAAAAGCGGAGACAGATTTGTTCTTAAGGTAAGGATCTCGGGGATGTCGGCTGCTCACTTCTACATCGATCATTTCATTTTCAAGCTTCCAAACATGGAGGTAAGCAATGCAACCATTAATTTTGATATCAGTTTATTTACCTTGTCTGGATGCCTAGAACTTCATAACCCATTTCCTGTCCTGTTTTCTTTCCCTAGCCAATCTTGGAGGCAAAGGGTACAGCAGTTTGGCTCAACAAAAGCTATCGTCCAGTGCGTATCCCACACGAATTTCTATCCAAGTTTGCTCAGTTCGTTCGGGATCATGACTCGAAGTGATCGAGTTTGGGGCGATATCGTTGAGACCACTGCTACTCAAATAGCATCTTTACACAACATGAATATCAGCCTGATTCACATAGCTACCACTAATCCCAAACTCAAACTCCGAGTCCCTTTGCCTCTTTTTTGTAACGTCTCTCGCCTATCGACATTGGCTATGACAACTCCCAAATGCTCTCCCCCACGAACATTTGATCTCAATACTAACCCTACTATTCAACCTAGCCCCTATCGAATGGATGGGTTCGTAGACTATGAGATGAAAGTTCGTGGTTATGAGTTGGATCAGTACGGTGTCGTCAATAATGCTGTTTATTCTTATTATTGTTACTACGCTGAGCACGAATGGTTAAATAGTATAGGTGTGAGTCTTGATGTAATTACCAGTGACGGGGAGTCGTTAGCTCTATCAGAGATGTCTTTGAAGTTCCTTTCGTCACTTAGAAGCGGAGATCGATTTGTTCTTAAGATGAGGTTTTTGGACATCTCAAAAGCTCGGATCTACCTCGAGCACAAAATTTTCAAGCTACCAAATATGGAGGCAATCTTAGAGGCACAGGTGACGGGAGTTTGGCTTAGCAAAAATCTTCGTCCAATGCGGATCCCACAAAAATATTTATCCAAATTTGCTCAATTTATTCATGATCATAATCAATCTAACAGATCAACGGTCGGGATTAAAGACGATGACAAAGATGGAGCCAACATACAGCACGAATAA 2307 47.46 MVCADSDQTVLDSMAMGLERSKQLHNFTLPFLKWGNQKYLRCTKLDSDCADADADVPPPADRRSSAVRWNCRKFQTDRPLWLKDSAKRPRASKSKIHDNCDGDEGIAAVREKLMIDLKTAADKMKVAFWRDGVVDDEDEPEKKTPAAPVPAPAPDKDSKPWSLRVKKTASKTPIDTVTEGRSGEKALKINKRLDKRPIRNSPLRSGDGGGGVKSPGRRLVMEKKEREKFSVSLSKKEIEEDFMAMVERRPPRRPKKRPRNVQNQIDTLFPGAWLTEITADLYDVPEIQKIEKASINPIRSPPPAFHYKTAGLALPSSLSCTISRPSPTSLRLRSSSVTRTSISSSFQLKAGKGMDGFLDVELKVRDYELDQFGVVNNAVYASYCQHGRHELLESIGLSPDEVARDGDALALSELSLKFLAPLKSGDRFVLKVRISGMSAAHFYIDHFIFKLPNMEVSNATINFDISLFTLSGCLELHNPFPVLFSFPSQSWRQRVQQFGSTKAIVQCVSHTNFYPSLLSSFGIMTRSDRVWGDIVETTATQIASLHNMNISLIHIATTNPKLKLRVPLPLFCNVSRLSTLAMTTPKCSPPRTFDLNTNPTIQPSPYRMDGFVDYEMKVRGYELDQYGVVNNAVYSYYCYYAEHEWLNSIGVSLDVITSDGESLALSEMSLKFLSSLRSGDRFVLKMRFLDISKARIYLEHKIFKLPNMEAILEAQVTGVWLSKNLRPMRIPQKYLSKFAQFIHDHNQSNRSTVGIKDDDKDGANIQHE 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11019043 11026804 + CmoCh18G010190.1 Cmo18g01019 402792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01019 768 PANTHER 4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER 592 745 - -
Cmo18g01019 768 MobiDBLite consensus disorder prediction 749 768 - -
Cmo18g01019 768 MobiDBLite consensus disorder prediction 750 768 - -
Cmo18g01019 768 MobiDBLite consensus disorder prediction 181 201 - -
Cmo18g01019 768 CDD 4HBT 360 450 - -
Cmo18g01019 768 PANTHER ACYL-ACYL CARRIER PROTEIN THIOESTERASE ATL1, CHLOROPLASTIC-RELATED 592 745 - -
Cmo18g01019 768 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 608 746 IPR029069 -
Cmo18g01019 768 Pfam Thioesterase superfamily 626 709 IPR006683 -
Cmo18g01019 768 Pfam Thioesterase superfamily 372 455 IPR006683 -
Cmo18g01019 768 CDD 4HBT 614 722 - -
Cmo18g01019 768 MobiDBLite consensus disorder prediction 135 216 - -
Cmo18g01019 768 PANTHER 4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER 326 456 - -
Cmo18g01019 768 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 354 453 IPR029069 -
Cmo18g01019 768 Pfam Protein of unknown function (DUF1639) 233 282 IPR012438 -
Cmo18g01019 768 Gene3D Hotdog Thioesterase 602 744 - -
Cmo18g01019 768 Gene3D Hotdog Thioesterase 341 463 - -
Cmo18g01019 768 PANTHER ACYL-ACYL CARRIER PROTEIN THIOESTERASE ATL1, CHLOROPLASTIC-RELATED 326 456 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01019 - - - csv:101211482 399.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01163 Cmo-Chr15:8103985 Cmo18g01019 Cmo-Chr18:11019043 3.02E-11 dispersed
Cmo18g01019 Cmo-Chr18:11019043 Cmo12g00568 Cmo-Chr12:3505830 3.07E-12 dispersed
Cmo10g00325 Cmo-Chr10:1464973 Cmo18g01019 Cmo-Chr18:11019043 1.35E-28 wgd
Cmo11g00286 Cmo-Chr11:1388736 Cmo18g01019 Cmo-Chr18:11019043 1.03E-07 wgd
Cmo15g00959 Cmo-Chr15:4979790 Cmo18g01019 Cmo-Chr18:11019043 3.17E-50 wgd
Cmo18g01019 Cmo-Chr18:11019043 Cmo04g01571 Cmo-Chr4:8038039 1.15E-103 wgd
Cmo18g01019 Cmo-Chr18:11019043 Cmo04g02164 Cmo-Chr4:15568573 6.54E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g325 . . . . . . . . . Cmo18g01019 . Cma18g01010 . Car18g00931 . Cpe09g00313 . Bhi07g01306 . . Lac13g0512 Hepe01g1177 . . Cla05g02287 Cam05g2460 Cec05g2480 . Clacu05g2455 Cmu05g2316 Cre05g2434 Cone13ag0822 Cone19ag0828 . . Lsi04g00242 . . Cme10g00245 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002243 1 4 1 1 1 2 4 1 1 1 2 2 2 3 2 2 2 1 3 2 1 2 3 5 5 1 2 2 1 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01019 Cmo_Chr18 FPKM 0.0 0.816986 0.0 0.0 0.374083 0.665687 1.128386 0.0 0.0 0.0