Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01020 ATGGCTGAAGCAAAGAGATCAAACCCTGATGTGGAGAAGAGGGTGATGGTGGCCGTAGACGAGAGTGAGTGTAGCTACTATGCCCTAATCTGGGTACTGGAAAATCTTAAACAATCCATTGCCGACTCGCCTCTTTTCATCTTCACGGCTCTACCTCCGCGCACCAGTTATACCTCCGGTGCCGGTGCCTCTCTCGGCCTCGCGCGATCGTGTTTCCCTGTCGCATCCAATACCGAGTTGGCTCATACGCTTCAAGAGAATGATAAGAAAGTTAGATGCGGCATCCTAGAGAAAGCAAAAGATATCTGTGCTGAAAGAGGGGTGGCTGCGATATCCATCACAGAGGTTGGGGATCCTGGAAGGACGATATGTGATACGGTTGAAAAGCTCAATATAAATTTGCTTGTTTTGGGTGATCATGGCATTGGGAGAATTAAGAGAGCTCTGATCGGGAGTGTGAGCAACTACTGTGTTCAAAATGCCAAGTGCCCTGTCCTTGTCGTGAAGAAACCATAG 516 48.64 MAEAKRSNPDVEKRVMVAVDESECSYYALIWVLENLKQSIADSPLFIFTALPPRTSYTSGAGASLGLARSCFPVASNTELAHTLQENDKKVRCGILEKAKDICAERGVAAISITEVGDPGRTICDTVEKLNINLLVLGDHGIGRIKRALIGSVSNYCVQNAKCPVLVVKKP 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11027572 11032458 + CmoCh18G010200.1 Cmo18g01020 402793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01020 171 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 170 - -
Cmo18g01020 171 Pfam Universal stress protein family 13 169 IPR006016 -
Cmo18g01020 171 PRINTS Universal stress protein signature 12 30 IPR006015 -
Cmo18g01020 171 PRINTS Universal stress protein signature 129 141 IPR006015 -
Cmo18g01020 171 PRINTS Universal stress protein signature 147 169 IPR006015 -
Cmo18g01020 171 CDD USP_Like 14 168 - -
Cmo18g01020 171 Gene3D HUPs 8 171 IPR014729 -
Cmo18g01020 171 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 171 - -
Cmo18g01020 171 PANTHER UNIVERSAL STRESS PROTEIN A-LIKE PROTEIN 1 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01020 - - - cmax:111467462 329.331
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g01066 Cmo-Chr17:8889868 Cmo18g01020 Cmo-Chr18:11027572 4.86E-21 dispersed
Cmo18g01020 Cmo-Chr18:11027572 Cmo14g01623 Cmo-Chr14:12893415 1.85E-22 dispersed
Cmo18g01020 Cmo-Chr18:11027572 Cmo12g00148 Cmo-Chr12:957708 1.70E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g324 . . . . . . . . . Cmo18g01020 . . . Car18g00933 . . . Bhi07g01308 . . . . . . Cla05g02288 Cam05g2461 Cec05g2481 Cco05g2524 Clacu05g2456 Cmu05g2317 Cre05g2435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007321 0 6 0 0 0 1 1 1 1 2 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 0 1 1 0 3 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01020 Cmo_Chr18 FPKM 2.234559 3.187225 0.0 0.384137 10.801273 11.217896 11.451842 6.483275 7.177277 7.073124