Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01029 ATGAGAATGAGCTGCAATGGCTGCCGGATCCTTCGCAAAGGCTGCAGCCATGACTGTATTATCAGACCTTGTCTTCAATGGATCCCCTCCCCTGATTCTCAGGCCAACGCCACCATCTTTCTTGCCAAATTCTATGGCCGTGCGGGTCTCTTCAACCTCATAACCGCCGCCGCAGAACACCTCCGCCCTGCTATTTTCAAGTCGTTGCTGTACGAGGCATGCGGCCGGATGGTGAATCCGGTCTACGGCTCCGTCGGATTGCTCTGCTCCGGCGACTGGGATAAGTGTCAGGCCGCCGTCGACGCCGTGTTGACCGGATCCATGATCGTCGAACCAGACGCGCCGCTGTCAAACACTAACCTTTCCCTTAAATGTTGCGACATTCGTCATGTTTGTAACGACACCAATTTGGCAGTTCCCGGCGAGCTTCACAAGGGCAAGACTCGAAACCGGTTCAAAAAGCCCGACCATCGAGCCAAATCCAAACCCAAACCCGGACCGGGTCATGAATTGGGAAGTGGGTCGAATGTGGAGGTGATAGAGATAGACCGAATGGCCGATGATTTGATGACGAACCGGAGGAAACCGGGTTGGGTTTTGAGAAATGGAATGTGGGTTGAGGAGGAGGATGTTGAGCTGGAGCTGACTCTTAATTCGGCTCAGTAA 666 53.75 MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRAKSKPKPGPGHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11077585 11078926 + CmoCh18G010290.1 Cmo18g01029 402802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01029 221 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Cmo18g01029 221 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cmo18g01029 221 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 184 - -
Cmo18g01029 221 MobiDBLite consensus disorder prediction 145 176 - -
Cmo18g01029 221 PANTHER LOB DOMAIN-CONTAINING PROTEIN 41-LIKE 1 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00825 Cmo-Chr14:4272280 Cmo18g01029 Cmo-Chr18:11077585 2.25E-66 dispersed
Cmo18g01029 Cmo-Chr18:11077585 Cmo02g00023 Cmo-Chr2:137845 1.97E-10 dispersed
Cmo10g00250 Cmo-Chr10:1112817 Cmo18g01029 Cmo-Chr18:11077585 6.24E-63 wgd
Cmo11g00273 Cmo-Chr11:1337398 Cmo18g01029 Cmo-Chr18:11077585 2.60E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11539 PF03195 LOB 5.90E-23 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01029 - - cmax:111467594 430.639