Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g01029 | ATGAGAATGAGCTGCAATGGCTGCCGGATCCTTCGCAAAGGCTGCAGCCATGACTGTATTATCAGACCTTGTCTTCAATGGATCCCCTCCCCTGATTCTCAGGCCAACGCCACCATCTTTCTTGCCAAATTCTATGGCCGTGCGGGTCTCTTCAACCTCATAACCGCCGCCGCAGAACACCTCCGCCCTGCTATTTTCAAGTCGTTGCTGTACGAGGCATGCGGCCGGATGGTGAATCCGGTCTACGGCTCCGTCGGATTGCTCTGCTCCGGCGACTGGGATAAGTGTCAGGCCGCCGTCGACGCCGTGTTGACCGGATCCATGATCGTCGAACCAGACGCGCCGCTGTCAAACACTAACCTTTCCCTTAAATGTTGCGACATTCGTCATGTTTGTAACGACACCAATTTGGCAGTTCCCGGCGAGCTTCACAAGGGCAAGACTCGAAACCGGTTCAAAAAGCCCGACCATCGAGCCAAATCCAAACCCAAACCCGGACCGGGTCATGAATTGGGAAGTGGGTCGAATGTGGAGGTGATAGAGATAGACCGAATGGCCGATGATTTGATGACGAACCGGAGGAAACCGGGTTGGGTTTTGAGAAATGGAATGTGGGTTGAGGAGGAGGATGTTGAGCTGGAGCTGACTCTTAATTCGGCTCAGTAA | 666 | 53.75 | MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRAKSKPKPGPGHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 11077585 | 11078926 | + | CmoCh18G010290.1 | Cmo18g01029 | 402802 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g01029 | 221 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 103 | IPR004883 | - | |
Cmo18g01029 | 221 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
Cmo18g01029 | 221 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 184 | - | - | |
Cmo18g01029 | 221 | MobiDBLite | consensus disorder prediction | 145 | 176 | - | - | |
Cmo18g01029 | 221 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 41-LIKE | 1 | 184 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo14g00825 | Cmo-Chr14:4272280 | Cmo18g01029 | Cmo-Chr18:11077585 | 2.25E-66 | dispersed | |
Cmo18g01029 | Cmo-Chr18:11077585 | Cmo02g00023 | Cmo-Chr2:137845 | 1.97E-10 | dispersed | |
Cmo10g00250 | Cmo-Chr10:1112817 | Cmo18g01029 | Cmo-Chr18:11077585 | 6.24E-63 | wgd | |
Cmo11g00273 | Cmo-Chr11:1337398 | Cmo18g01029 | Cmo-Chr18:11077585 | 2.60E-26 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11539 | PF03195 | LOB | 5.90E-23 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g01029 | - | - | cmax:111467594 | 430.639 |