Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01038 ATGGATTCTACATTCTCCTATATAAAATCGCGGAATTCTGATCCAATCCTTCTTGCTCTCTTTGCTTGCGCTTTCGGTTACCGTCGTTCGGAGGCTTTGCTCGTTCTAGGGTACTACCATAATTCTCTCGAATCCGGCGTACGACGTGCTGCTGTGGTCTTGCATCTCTGCGAAGGCCGCGATCGAGTTCTGAAGATGAAGATTTTCGTCAAGACTCTCAAGGGCTCACACTTCGAAATCGAAGTTCAGCCTCAAGATATGGTTGCTGATGTGAAGAAAAACATAGAAACTGTTCAGGGTGCTGACGTTTACCCTGCTGCACAACAGATGCTTATCCATCAGGGAAAAGTTCTTAAAGACGGCACAACACTGGATGAAAATAAAGTTGCAGAAAATAGTTTTATTGTAATCATGTTGACAAAGAATAAAAGTTCATCGGGTGGGACGTCTTCTACCACACAAGCTGCACCAGTGTCAAAGGCACCACAGAACACTGCCCCTGCACCTGCTGCAACTCCAGTCTCAACATCTGAAGTTCCTCTACCAACTTCAGCACCTCCGGCTACTATTACCACCTCTTCTCTTCCAGCTCCAGCGCCAGCTCAGGCGCCAGCTCCAGCGCCAGCTCAGGCGCCAGCTCCAGCGCCAGCTCAGGCGCCGGCAACCACTGTCTTGCCAGAATCTGATGTCTACAGCCAAGCAGCTTCTAACCTGGTTGCGGGCAGTAACTTGGAGGAGACTATCCAACAGATTCTTCTCATGGGCGGAGGGATTTGGGATAGGGACACTGTTGTTCAAGCTCTTCGTGCTGCTTACAATAATCCAGAAAGGGCTGTTGATTACCTTTATTCTGGCATACCTGAACAAGTTGAAGTTCCACCTGCTGCTCATGTTCCGTCTACTGTTCCAGTGACCAACCCTTCCGCTCAACCTGCACAGCCTGCCCAACCTGCGTCTGCGACAACCACTGGTCCAAATGCTAATCCATTAGATCTCTTTCCTCAGGGTGTACCTAATTTAGCTTCCGGAGCCGTTAGTTCCGGCAGTCTTGATTTTCTACGAAATAGTCCTCAGTTCCAAGCTTTGCGAGCTATGGTGCGGGCTAACCCTCAGATACTCCAGCCTATGCTTCAAGAGTTGGGTAAACAAAATCCTCAGCTTATTAGACTTATTCAAGATCATCAACCTGACTTCCTCCGCTTGATTAATGAGCCTCTTGAAGGAGAAGGGAATGTACTTGGGCAGCTTGCTGATGCTATGCCGCAGGCTATAACTGTAACCCCAGAGGAACGGGAAGCCATTCAACGGCTTGAGGATTTGGGTTTCGACAGAGCTCTAGTGGTGGAGGTTTTCTTCGCCTGCAACAAGAACGAGGAAATGGCTGCGAACTACCTTTTAGATCATATTCACGAATTTGAGGGTAATCAGAATTAA 1434 48.4 MDSTFSYIKSRNSDPILLALFACAFGYRRSEALLVLGYYHNSLESGVRRAAVVLHLCEGRDRVLKMKIFVKTLKGSHFEIEVQPQDMVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLDENKVAENSFIVIMLTKNKSSSGGTSSTTQAAPVSKAPQNTAPAPAATPVSTSEVPLPTSAPPATITTSSLPAPAPAQAPAPAPAQAPAPAPAQAPATTVLPESDVYSQAASNLVAGSNLEETIQQILLMGGGIWDRDTVVQALRAAYNNPERAVDYLYSGIPEQVEVPPAAHVPSTVPVTNPSAQPAQPAQPASATTTGPNANPLDLFPQGVPNLASGAVSSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLEGEGNVLGQLADAMPQAITVTPEEREAIQRLEDLGFDRALVVEVFFACNKNEEMAANYLLDHIHEFEGNQN 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11121436 11128573 + CmoCh18G010380.1 Cmo18g01038 402811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01038 477 Gene3D - 63 145 - -
Cmo18g01038 477 MobiDBLite consensus disorder prediction 143 198 - -
Cmo18g01038 477 CDD Ubl_Rad23 66 139 - -
Cmo18g01038 477 SUPERFAMILY Ubiquitin-like 66 144 IPR029071 -
Cmo18g01038 477 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 242 285 IPR015940 -
Cmo18g01038 477 MobiDBLite consensus disorder prediction 143 223 - -
Cmo18g01038 477 MobiDBLite consensus disorder prediction 303 327 - -
Cmo18g01038 477 Gene3D - 237 287 - -
Cmo18g01038 477 TIGRFAM rad23: UV excision repair protein Rad23 66 473 IPR004806 GO:0006289
Cmo18g01038 477 Pfam Ubiquitin family 68 141 IPR000626 GO:0005515
Cmo18g01038 477 SMART ubq_7 66 140 IPR000626 GO:0005515
Cmo18g01038 477 MobiDBLite consensus disorder prediction 199 215 - -
Cmo18g01038 477 ProSiteProfiles Ubiquitin domain profile. 66 144 IPR000626 GO:0005515
Cmo18g01038 477 SUPERFAMILY UBA-like 411 472 IPR009060 GO:0005515
Cmo18g01038 477 SUPERFAMILY UBA-like 241 292 IPR009060 GO:0005515
Cmo18g01038 477 Pfam XPC-binding domain 350 405 IPR015360 GO:0003684|GO:0006289|GO:0043161
Cmo18g01038 477 PANTHER EXCISION REPAIR PROTEIN RAD23, PUTATIVE-RELATED 66 473 - -
Cmo18g01038 477 PRINTS DNA repair protein Rad23 signature 441 455 IPR004806 GO:0006289
Cmo18g01038 477 PRINTS DNA repair protein Rad23 signature 376 398 IPR004806 GO:0006289
Cmo18g01038 477 PRINTS DNA repair protein Rad23 signature 424 440 IPR004806 GO:0006289
Cmo18g01038 477 PRINTS DNA repair protein Rad23 signature 456 471 IPR004806 GO:0006289
Cmo18g01038 477 SMART CBM 348 391 IPR006636 -
Cmo18g01038 477 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 427 468 IPR015940 -
Cmo18g01038 477 SUPERFAMILY XPC-binding domain 347 411 IPR036353 GO:0003684|GO:0006289|GO:0043161
Cmo18g01038 477 PANTHER UV EXCISION REPAIR PROTEIN RAD23 66 473 - -
Cmo18g01038 477 Gene3D - 422 469 - -
Cmo18g01038 477 Pfam UBA/TS-N domain 244 282 IPR015940 -
Cmo18g01038 477 Pfam UBA/TS-N domain 430 465 IPR015940 -
Cmo18g01038 477 Gene3D - 341 405 IPR036353 GO:0003684|GO:0006289|GO:0043161
Cmo18g01038 477 SMART uba_6 244 284 IPR015940 -
Cmo18g01038 477 SMART uba_6 430 467 IPR015940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01038 K10839 RAD23, HR23; UV excision repair protein RAD23 - csv:101220491 620.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01062 Cmo-Chr14:5821506 Cmo18g01038 Cmo-Chr18:11121436 6.07E-137 dispersed
Cmo18g01038 Cmo-Chr18:11121436 Cmo04g01828 Cmo-Chr4:9193627 4.28E-08 dispersed
Cmo14g00629 Cmo-Chr14:3156656 Cmo18g01038 Cmo-Chr18:11121436 5.03E-17 transposed
Cmo18g01038 Cmo-Chr18:11121436 Cmo04g01609 Cmo-Chr4:8196424 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01038 Cmo_Chr18 FPKM 16.479551 19.536339 7.847411 9.101908 9.959884 11.319297 8.794184 11.676141 10.908039 10.291095