Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01042 ATGGCTAACGACGCTACTCACCGGAAGCACCGCCGATCTGCTTCCGATGAGGAGGAGGAGAAGTCCTCGAAGCGTCATAAGCATCGTCATCATCGCCGCCACCACCACAGACATCGTCACGGTAGCAATAAGAACGAAGAAGAAAGCTATCGTGACCAGGACGATTGTGTTCCTCCTGTTGCTAACCGTAGATCTCGGCTTGAAGATGATGTGGAGGAAGGGGAAATTCTGGAAGAGGATGAGTCTGGCGCTCGCGAGAACGAGAGTGCGATGAAGGAGGCGGATGTGGAATATGGGGAAATTGAAGCTGATGGAAATTCTGATAGAGCTGATCGGTCCATTGTGGAGCGTTATTCGGTGGATGAATCATCAAATACCGAGGCAAATTTAACAGTGAAAAAGGGAGCCGGAATCTGTCCTCAAGATCAGAAGATTTTGAAAGAGAAGAATAAGTTATTTAATTTAGTAGACAAAGATGGCTATTATCTAAAAAAAGACTTAGGGGAGGAAAACACGACTTTCTACCAAACTAACAGTGGCCATAAACATGGCAATGACATTAGCTTTTCCAGAAGTGAAGTGACTGGAACTAAATACGGCGATCTTGAACCCTGTCTAGAGGGTCGTAACAAAAGTGAATTTGATCAAGGATCTCTTGAGTTAGATGAGAGTCGCCACAAAAAAATGTCATCTTTTTCCAAAGGTGGCAGTATGAAAATAAGCGACATGGACAATAAAAAAGTGGTAACAGACAGAAGCACCTTGGGGAATTCAAAAAGGCCACAGTTGGAAAGGGCTGAAGACAAGTCCCAGGATTTTACGCCATCAACATCTCATGATCGATTCATTGATGCATCAGATTGTAGGAGTAGATCAACGTCAAATTCTCACTTCAGGGGGCAATCTCAGTCTCGTGAAACAGCAGAAGAGGAGGTGGAATCCAAGAGGAGTCATCATCGTGGTTCAGATCGTTTGGGATTTGATGAGTATGCTAGGGGAGAGGGAAGGCATCGAAGCAGGGATACAAAGGACAGAGGGAGAAGTAAGATAGAGGTGGATAGGGACTGGTCAAAGGAAAAAGAACGCGAAAAAAGCAAAGATAAAGATATTGAGAGAGATAAGCACAAGTATGATGAAAGAGAAAGAGGAAGGAGTAGGGATGGAAGAAAGGAGGTAGAACGAAATAGGAGTAGGGAAAGAGAATTGGGTAGAGATAGGAGGAGGGAAAAGGATGTGGAAAGAGACAGGAGAGTGAAGGAAAGGGATCGTAGTAGGGAAAGGGAGGCAGAAAGAGATAGAAGAGTGGATAAGGAAAGAGATTGGAGTAGGGAAAGAGAGGTAGAGAGGGATAGAAGAGCAGAGAAGGAAAGATGTAGGAGCACAGATAGAGAGGGTAATAGGGATAGAAGAAGAGAAAGGGAAAAAGATAGGAGCAAGGACAAAGAAGTGGACTGGGATGGGAGAAGGGATAGGGACAGAGCTCGGAATGATGATAAGGAGGCCGAATATAGTGATAGAAACAGAGACAAGGAAAGGGTGAGGGAGATGTCAAGGGACCGGTTCAGGGACAAAGAATCAGATAGAGAGAGACGAGATGATAGAAATAAAAATAAAGCCAGTGATATTTTAAGTAGTAAGGATAAGTATGGGAACCTTGAACATGGCTATACTAAAGTTTCTAGTAAGCAGTCTAGACGTTATGAGAATGAATCTGGTCAGAATGGAGGAAGAAATGCTTATGAAAAGCATGGTAGTTTTAAGAAAAATGCTCTTGAAGGAGGTGAAGGCAATCTAATGAGTGATCACGATGAAGAGGAAGAGGATGAGGACAACATGTCATTTCAATTTGCTGATCAAGAAGAGGAGTACCTTAACAGAATCAAGGAGGAGAGTAGAAGGAGGAGTCAAGCAATCTTAGAAAAATACAAGTGTCAGCAGTTAGAGAAACAAGTAAAGCCTTCTTTGAAGGAATCCGAGAAAGATAAGGATTCCACAGATGATTCTTCTCAATCAGAAGCTGGTGCTCATGCTATTCCAGACTTGGTTGATGGAGTGGTGGATGATAGTGTTGCTGACTCATCTTTTGTTGTGGAAAAATCACCACAACAAAATGGAATAGCTGCGTCGGATAAAACTGTTGGTACCAAAGGACTTGGAGAGGGTACTCCAAAGGCTGAGGGGTCAGATGGAATATTCTGTGACGATATTTTTGGAGAAACACCTGCTGCAGTTCGTAAAATGGGCAAAGGAGATGGTTTGCGTATAGAGAGGAGTGGTCTTCATGACAATTGGGACGATGCAGATGGATATTATAACTATCGATTTGGTGAAGTCCTTGATGGTCGGTATGAAATTGCTGCTGCTCATGGCAAAGGTGTCTTTTCAACTGTAGTCCGTGCCAAGGATCTCAAAGGTGGTCATGATGAACCAGAAGAAGTGGCAATCAAAATTTTGCGTAGTAATGAAACAATGTACAAGGCTGGTTTGGAGGAGTTGGTCATATTGAAAAAGCTAGTAGGTGCAGATCCAGATGACAAGCGTCACTGTGTTCGTTTTCTTTCAAGTTTCAAATATAGGAATCATCTTTGTTTAGTTTTTGAATCTCTACATATGAATCTACGTGAGGTCTTGAAGAAATTTGGGCGCAATATTGGCCTTAAGCTAACTGCTGTGAGGGCATACGCTAAGCAGCTTTTTATTGCCCTGAAGCATTTGAGAAATTGTGGTGTTCTACATTGCGACATAAAGCCGGATAATATGCTGGTCAATGAGGGCAAAAATGTGCTGAAGCTTTGTGATTTTGGCAATGCCATGTTTGCTGGTAAAAATGAAATTACCCCATACCTTGTTAGCCGGTTTTATCGTGCCCCTGAAATAATTTTAGGGCTGCCGTATGACCATCCAATGGATATCTGGTCTGTGGGTTGCTGTTTGTACGAGCTGTCTACAGGAAAAGTCCTTTTTCCAGGTCCTTCTAACAATGACATGCTGCGCCTGCACATGGAATTAAAGGGCCCTTTTCCAAAGAAGATGCTCCGCAAGGGAGCATTTACTGACCAACATTTTGACCAGGACCTGAACTTCCATGCTTCTGAGGAGGATCCTGTTACCAAAAAGACCATAAAGCGAATAATAGTCAATATAAAGCCTAAAGATATTGGATCAATTATTAGGGGATCTCCTGGTGAAGATCCAAAGATGTTAGCCAATTTTAAGGATCTTCTTGACAAAATTTTTGTATTGGATCCAGAAAAAAGGATGACAGTATCACAAGCATTGAACCATCCGTTCATCACTGGCAAGTGA 3306 42.74 MANDATHRKHRRSASDEEEEKSSKRHKHRHHRRHHHRHRHGSNKNEEESYRDQDDCVPPVANRRSRLEDDVEEGEILEEDESGARENESAMKEADVEYGEIEADGNSDRADRSIVERYSVDESSNTEANLTVKKGAGICPQDQKILKEKNKLFNLVDKDGYYLKKDLGEENTTFYQTNSGHKHGNDISFSRSEVTGTKYGDLEPCLEGRNKSEFDQGSLELDESRHKKMSSFSKGGSMKISDMDNKKVVTDRSTLGNSKRPQLERAEDKSQDFTPSTSHDRFIDASDCRSRSTSNSHFRGQSQSRETAEEEVESKRSHHRGSDRLGFDEYARGEGRHRSRDTKDRGRSKIEVDRDWSKEKEREKSKDKDIERDKHKYDERERGRSRDGRKEVERNRSRERELGRDRRREKDVERDRRVKERDRSREREAERDRRVDKERDWSREREVERDRRAEKERCRSTDREGNRDRRREREKDRSKDKEVDWDGRRDRDRARNDDKEAEYSDRNRDKERVREMSRDRFRDKESDRERRDDRNKNKASDILSSKDKYGNLEHGYTKVSSKQSRRYENESGQNGGRNAYEKHGSFKKNALEGGEGNLMSDHDEEEEDEDNMSFQFADQEEEYLNRIKEESRRRSQAILEKYKCQQLEKQVKPSLKESEKDKDSTDDSSQSEAGAHAIPDLVDGVVDDSVADSSFVVEKSPQQNGIAASDKTVGTKGLGEGTPKAEGSDGIFCDDIFGETPAAVRKMGKGDGLRIERSGLHDNWDDADGYYNYRFGEVLDGRYEIAAAHGKGVFSTVVRAKDLKGGHDEPEEVAIKILRSNETMYKAGLEELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLKLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEGKNVLKLCDFGNAMFAGKNEITPYLVSRFYRAPEIILGLPYDHPMDIWSVGCCLYELSTGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFTDQHFDQDLNFHASEEDPVTKKTIKRIIVNIKPKDIGSIIRGSPGEDPKMLANFKDLLDKIFVLDPEKRMTVSQALNHPFITGK 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11140095 11149089 + CmoCh18G010420.1 Cmo18g01042 402815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01042 1101 Gene3D Phosphorylase Kinase; domain 1 754 842 - -
Cmo18g01042 1101 MobiDBLite consensus disorder prediction 199 632 - -
Cmo18g01042 1101 MobiDBLite consensus disorder prediction 1 112 - -
Cmo18g01042 1101 ProSiteProfiles Protein kinase domain profile. 783 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01042 1101 Pfam Protein kinase domain 788 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01042 1101 MobiDBLite consensus disorder prediction 288 302 - -
Cmo18g01042 1101 CDD STKc_PRP4 782 1098 IPR044092 GO:0004674|GO:0006468|GO:0045292
Cmo18g01042 1101 ProSitePatterns Serine/Threonine protein kinases active-site signature. 910 922 IPR008271 GO:0004672|GO:0006468
Cmo18g01042 1101 MobiDBLite consensus disorder prediction 41 71 - -
Cmo18g01042 1101 MobiDBLite consensus disorder prediction 599 616 - -
Cmo18g01042 1101 MobiDBLite consensus disorder prediction 25 40 - -
Cmo18g01042 1101 Gene3D Transferase(Phosphotransferase) domain 1 843 1099 - -
Cmo18g01042 1101 MobiDBLite consensus disorder prediction 649 669 - -
Cmo18g01042 1101 SMART serkin_6 783 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01042 1101 MobiDBLite consensus disorder prediction 649 683 - -
Cmo18g01042 1101 MobiDBLite consensus disorder prediction 303 565 - -
Cmo18g01042 1101 SUPERFAMILY Protein kinase-like (PK-like) 770 1100 IPR011009 -
Cmo18g01042 1101 MobiDBLite consensus disorder prediction 204 230 - -
Cmo18g01042 1101 PANTHER DUAL SPECIFICITY PROTEIN KINASE 455 1101 - -
Cmo18g01042 1101 MobiDBLite consensus disorder prediction 261 275 - -
Cmo18g01042 1101 MobiDBLite consensus disorder prediction 696 710 - -
Cmo18g01042 1101 MobiDBLite consensus disorder prediction 696 725 - -
Cmo18g01042 1101 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 455 1101 - -
Cmo18g01042 1101 MobiDBLite consensus disorder prediction 1 24 - -
Cmo18g01042 1101 MobiDBLite consensus disorder prediction 83 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01042 K08827 PRPF4B; serine/threonine-protein kinase PRP4 [EC:2.7.11.1] - csv:101220260 1500.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01042 Cmo-Chr18:11140095 Cmo02g01047 Cmo-Chr2:6373600 1.41E-41 dispersed
Cmo18g01042 Cmo-Chr18:11140095 Cmo04g01606 Cmo-Chr4:8179027 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003313 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 10 7 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75077 PF00069 Pkinase 1.70E-46 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01042 Cmo_Chr18 FPKM 30.667656 33.842304 75.328461 76.708725 22.8951 21.991468 18.252222 2.440886 2.848825 2.298948