Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01047 ATGTGCCTGTGGTATGATAGTACATTGATTTTGGCTGTAGATGTGATGTTAAAGGAGAGGGATTGTGTAGTACGTTTACGATGCGCAGCAGCAGCGGCAGCACTCCGTATCGGAGTGTGTCTTAACAAAAAGCCTCGTTTGTCCCGGCTCTCTTCTTCTTGTAGTCTCTCTCTCTCTGTCTCTCTCTCTTTCTCCGACGACAGGTTCCTGAAGCTCAGCCAGGCAAGGGCATTGATCTTGTTTTACAGGAAATCACTGTATAAGATGTCTATGGTCCACGAGCCTCTATATCCAATAGCTGTCCTTATTGACGAGCTGAAAAATGATGACATTCAGCTACGGTTGAACTCAATTCGTAGACTTTCTACAATTGCACGTGCTCTTGGAGAGGAGCGAACGCGTAAAGAATTGATCCCATTTCTGAGTGAAAACAATGATGATGATGATGAGGTGCTTCTTGCTATGGCTGAGGAGTTGGGAGTGTTCATCCCATATGTTGGTGGTGTTGAGCATGCCCATGTTTTGCTTCCACCTCTGGAAACTCTGTGCACTGTTGAGGAAACCTGTGTGAGGGACAAAGCTGTGGAGTCTTTGTGCAGAATTGGTTCCCAAATGAGAGAGAGTGATTTAGTTGATTGGTTTATTCCTCTCGTTAAGAGATTGGCGGCTGGTGAATGGTTTACGGCTAGAGTATCCGCATGTGGGCTATTTCATATTGCCTACCCTAGTGCTCCAGAGATGTTGAAGACTGAGTTGCGGTCAATGTATGGCCAATTGTGTCAAGATGATATGCCCATGGTTAGGAGGTCTGCTGCAACAAATCTAGGAAAGTTTGCTGCAACAATTGAACCTGCTCATCTGAAGACTGATACCATGACTATTTTTGAGGATCTTACTCAAGATGATCAGGACTCTGTGAGATTGCTGGCCGTTGAGGGTTGTGCAGCTTTGGGCAAGTTATTGGAACCCCAGGATTGTGTATCACATATTCTTCCAGTTATCGTTAACTTCTCCCAGGATAAGTCTTGGCGTGTCCGTTACATGGTTGCCAACCAGTTATACGAGTTGTGTGAAGCTGTAGGACCTGAACCTACTAGGACGGACTTGGTACCTGCTTATGTGCGCTTGCTTCGAGACAATGAAGCTGAAGTTCGTATAGCAGCTGCTGGCAAAGTGACCAAGTTTTGCCGGATTTTAAGTCCAGAACTAGCAATTCAGCATATCCTTCCCTGCGTTAAGGAATTGTCATCAGATTCCTCTCAGCATGTCCGTTCAGCTTTAGCCTCAGTTATCATGGGAATGGCTCCTGTGTTGGGAAAGGATGCTACCATCGAACAACTGCTTCCGATATTCCTTTCTCTGCTTAAGGATGAATTCCCTGATGTGCGCCTCAATATCATTAGCAAGCTTGATCAAGTAAATCAGGTTATTGGAATTGATCTCTTGTCTCAATCACTGTTACCTGCCATTGTTGAACTTGCTGAGGATAGACACTGGAGAGTTAGGTTAGCAATTATAGAATACATTCCTTTATTGGCAAGTCAGCTGGGTGTAGGGTTTTTTGACGATAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGGTTTACTCAATCCGTGATGCAGCTGCTAACAATTTGAAGCGCCTTGCAGAAGAATTTGGTCCTGAGTGGGCAATGCAGCATATTGTCCCACAGGTTCTTGACATGATTAACAACCCACATTATTTGTATCGAATGACTGTTCTTCGTGCGGTCTCCCTTCTTGCCCCAGTTATGGGCTCAGAAATCACATGCACAAAGCTTTTACCGGTGGTTATCAGTTCTTCCAAGGACAGGGTTCCAAATATCAAGTTTAATGTGGCGAAAGTGTTGCAGTCTCTCATTCCCATAGTTGACCAACCTGTGGTGGAAAAAACTATCCGCCCTAGCCTAGTTGAACTCAGTGAAGATCCAGATGTAGATGTCCGACCGGGCTTCATTGCCATCGCAAACATCTGTACGAAGGTGCTTTTGCAGAAGTTGCTATTGTTTTTCAACGAAATAGCTGTATGTTTCTTCCCCCACGTTCGTTGTTGTAGTGCAGTTTGTGATGCATCTAGCGTGCAGAGTGAGCCATTGAGTAGAGACTTGATGCTTTTATTCCTTCTGCATCCTTATAATCTATAA 2172 44.75 MCLWYDSTLILAVDVMLKERDCVVRLRCAAAAAALRIGVCLNKKPRLSRLSSSCSLSLSVSLSFSDDRFLKLSQARALILFYRKSLYKMSMVHEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPEMLKTELRSMYGQLCQDDMPMVRRSAATNLGKFAATIEPAHLKTDTMTIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVSHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLDMINNPHYLYRMTVLRAVSLLAPVMGSEITCTKLLPVVISSSKDRVPNIKFNVAKVLQSLIPIVDQPVVEKTIRPSLVELSEDPDVDVRPGFIAIANICTKVLLQKLLLFFNEIAVCFFPHVRCCSAVCDASSVQSEPLSRDLMLLFLLHPYNL 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11163246 11172077 + CmoCh18G010470.1 Cmo18g01047 402820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01047 723 Pfam HEAT repeat 330 358 IPR000357 GO:0005515
Cmo18g01047 723 SUPERFAMILY ARM repeat 97 658 IPR016024 -
Cmo18g01047 723 ProSiteProfiles HEAT repeat profile. 525 563 IPR021133 -
Cmo18g01047 723 ProSiteProfiles HEAT repeat profile. 369 407 IPR021133 -
Cmo18g01047 723 ProSiteProfiles HEAT repeat profile. 564 602 IPR021133 -
Cmo18g01047 723 ProSiteProfiles HEAT repeat profile. 447 485 IPR021133 -
Cmo18g01047 723 ProSiteProfiles HEAT repeat profile. 408 446 IPR021133 -
Cmo18g01047 723 ProSiteProfiles HEAT repeat profile. 98 136 IPR021133 -
Cmo18g01047 723 ProSiteProfiles HEAT repeat profile. 603 641 IPR021133 -
Cmo18g01047 723 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 89 659 - -
Cmo18g01047 723 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 65 KDA REGULATORY SUBUNIT A BETA ISOFORM 89 659 - -
Cmo18g01047 723 Pfam HEAT repeats 449 549 - -
Cmo18g01047 723 ProSiteProfiles HEAT repeat profile. 252 290 IPR021133 -
Cmo18g01047 723 ProSiteProfiles HEAT repeat profile. 291 329 IPR021133 -
Cmo18g01047 723 ProSiteProfiles HEAT repeat profile. 330 368 IPR021133 -
Cmo18g01047 723 Gene3D - 92 663 IPR011989 -
Cmo18g01047 723 ProSiteProfiles HEAT repeat profile. 486 524 IPR021133 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01047 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A - csv:101222376 1110.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01047 Cmo-Chr18:11163246 Cmo04g01601 Cmo-Chr4:8153836 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g284 . . . . . Bpe10g00941 Bma14g01701 Bma15g00083 . Cmo18g01047 . Cma18g01033 . Car18g00957 Sed06g1871 Cpe09g00286 . Bhi07g01346 Tan04g0883 Cmetu10g0865 . Hepe01g1208 . . Cla05g02316 Cam05g2488 Cec05g2512 Cco05g2554 Clacu05g2483 Cmu05g2346 Cre05g2462 . . . . Lsi04g00273 Csa05g02596 . Cme10g00276 Blo06g01049 Blo11g00833 Bda07g01529 . Bpe11g01692 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003579 2 5 2 2 2 1 2 1 1 0 1 1 1 1 1 2 1 4 2 1 1 2 1 1 0 1 1 2 2 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01047 Cmo_Chr18 FPKM 4.12952 2.776765 0.695171 0.584422 0.837696 1.849787 2.135066 0.0 0.0 0.0