Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01060 ATGGACCAACCCACCACTTCCATTAAATCTCCGCCGCCCGACACCAGTCTCGTTTTGGACTCTGCTGACTCCAGCTCCGCCGTCGGTGGCGGCGTCGAGGCTGAATCCCGGAAGCTACCCTCCTCCCGTTTCAAAGGAGTGGTCCCACAGCCCAATGGCCGATGGGGCGCGCAGATTTACGAGAAGCACCAAAGGGTATGGCTGGGAACATTCAATGAAGAAGATGAAGCCGCACGTGCCTACGACGTGGCTGCTCAACGCTTCCGTGGTCGTGACGCCGTTACCAATTTCAAAACGTTATCTCACGGCCAAGTAGACGACGTCGTATCCGCCTTTCTTAACTCTCATTCCAAAGCTGAAATCGTTGACATGCTACGTAAACATACCTACCTAGACGAACTACACCAAAGCAAACGAAACGCCGATTTGTTATCTTCGGATCGTAAAAGAAACGGTTCGTTATTACCCGGTTCGGATAATGAACCGGATTCCGCTCGGGAACTTTTATTTGAAAAAGCCGTTACGCCTAGCGATGTTGGGAAATTGAACCGTTTAGTTATCCCTAAACAACACGCCGAGAAAAACTTCCCTCTCCAAACCGGTTCCGCCGGTTCAGCCGCTTCGTCCAAAGGACTTCTCTTAAACTTCGAAGACGGCGTCGGGAAAGTGTGGCGGTTCAGGTACTCGTATTGGAATAGTAGTCAAAGCTACGTGTTGACCAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAACCTAACCGCCGGTGACGTCGTGAGCTTCTTGAAATCGACCGGTGAAGATAAGCAGCTATACATTGAATGGAAGGCGAGTAAGAGTGCAGCCTCGACCGGGTCCAACACGAACCCGGTTCAGACGGTGAGATTATTTGGAGTGGACATTATGAAAGTAACGCCGAGTAGTGGGTGCGGTGAGAAGAGGAGAAGAGAAATGGAGTTTTTGAGTTCAGAATGTAACAAAAAACAAAGGATCGTCGGAGCATTGTAA 1005 50.35 MDQPTTSIKSPPPDTSLVLDSADSSSAVGGGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKTLSHGQVDDVVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNADLLSSDRKRNGSLLPGSDNEPDSARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSAGSAASSKGLLLNFEDGVGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLTAGDVVSFLKSTGEDKQLYIEWKASKSAASTGSNTNPVQTVRLFGVDIMKVTPSSGCGEKRRREMEFLSSECNKKQRIVGAL 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11230116 11231120 - CmoCh18G010600.1 Cmo18g01060 402833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01060 334 Pfam AP2 domain 43 90 IPR001471 GO:0003700|GO:0006355
Cmo18g01060 334 SUPERFAMILY DNA-binding domain 42 98 IPR016177 GO:0003677
Cmo18g01060 334 CDD B3_DNA 169 260 IPR003340 GO:0003677
Cmo18g01060 334 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 15 334 IPR044800 GO:0003700
Cmo18g01060 334 ProSiteProfiles AP2/ERF domain profile. 43 98 IPR001471 GO:0003700|GO:0006355
Cmo18g01060 334 ProSiteProfiles B3 DNA-binding domain profile. 170 278 IPR003340 GO:0003677
Cmo18g01060 334 SUPERFAMILY DNA-binding pseudobarrel domain 168 264 IPR015300 -
Cmo18g01060 334 SMART rav1_2 43 104 IPR001471 GO:0003700|GO:0006355
Cmo18g01060 334 MobiDBLite consensus disorder prediction 1 23 - -
Cmo18g01060 334 MobiDBLite consensus disorder prediction 1 45 - -
Cmo18g01060 334 Gene3D AP2/ERF domain 42 99 IPR036955 GO:0003700|GO:0006355
Cmo18g01060 334 Pfam B3 DNA binding domain 170 274 IPR003340 GO:0003677
Cmo18g01060 334 MobiDBLite consensus disorder prediction 142 163 - -
Cmo18g01060 334 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 15 334 - -
Cmo18g01060 334 CDD AP2 42 97 IPR001471 GO:0003700|GO:0006355
Cmo18g01060 334 SMART B3_2 170 278 IPR003340 GO:0003677
Cmo18g01060 334 Gene3D - 158 287 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo15g01051 Cmo18g01060 CCT
Cmo15g01051 Cmo18g01060 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00834 Cmo-Chr11:4237476 Cmo18g01060 Cmo-Chr18:11230116 1.81E-54 dispersed
Cmo15g01051 Cmo-Chr15:6789326 Cmo18g01060 Cmo-Chr18:11230116 6.99E-130 dispersed
Cmo17g00535 Cmo-Chr17:5282653 Cmo18g01060 Cmo-Chr18:11230116 1.88E-46 dispersed
Cmo18g01060 Cmo-Chr18:11230116 Cmo04g02102 Cmo-Chr4:13302123 5.20E-130 wgd
Cmo18g01060 Cmo-Chr18:11230116 Cmo04g01591 Cmo-Chr4:8109511 6.02E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11543 PF02362 B3 1.20E-26 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01060 K09287 - csv:101203784 533.102