Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g01060 | ATGGACCAACCCACCACTTCCATTAAATCTCCGCCGCCCGACACCAGTCTCGTTTTGGACTCTGCTGACTCCAGCTCCGCCGTCGGTGGCGGCGTCGAGGCTGAATCCCGGAAGCTACCCTCCTCCCGTTTCAAAGGAGTGGTCCCACAGCCCAATGGCCGATGGGGCGCGCAGATTTACGAGAAGCACCAAAGGGTATGGCTGGGAACATTCAATGAAGAAGATGAAGCCGCACGTGCCTACGACGTGGCTGCTCAACGCTTCCGTGGTCGTGACGCCGTTACCAATTTCAAAACGTTATCTCACGGCCAAGTAGACGACGTCGTATCCGCCTTTCTTAACTCTCATTCCAAAGCTGAAATCGTTGACATGCTACGTAAACATACCTACCTAGACGAACTACACCAAAGCAAACGAAACGCCGATTTGTTATCTTCGGATCGTAAAAGAAACGGTTCGTTATTACCCGGTTCGGATAATGAACCGGATTCCGCTCGGGAACTTTTATTTGAAAAAGCCGTTACGCCTAGCGATGTTGGGAAATTGAACCGTTTAGTTATCCCTAAACAACACGCCGAGAAAAACTTCCCTCTCCAAACCGGTTCCGCCGGTTCAGCCGCTTCGTCCAAAGGACTTCTCTTAAACTTCGAAGACGGCGTCGGGAAAGTGTGGCGGTTCAGGTACTCGTATTGGAATAGTAGTCAAAGCTACGTGTTGACCAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAACCTAACCGCCGGTGACGTCGTGAGCTTCTTGAAATCGACCGGTGAAGATAAGCAGCTATACATTGAATGGAAGGCGAGTAAGAGTGCAGCCTCGACCGGGTCCAACACGAACCCGGTTCAGACGGTGAGATTATTTGGAGTGGACATTATGAAAGTAACGCCGAGTAGTGGGTGCGGTGAGAAGAGGAGAAGAGAAATGGAGTTTTTGAGTTCAGAATGTAACAAAAAACAAAGGATCGTCGGAGCATTGTAA | 1005 | 50.35 | MDQPTTSIKSPPPDTSLVLDSADSSSAVGGGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKTLSHGQVDDVVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNADLLSSDRKRNGSLLPGSDNEPDSARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSAGSAASSKGLLLNFEDGVGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLTAGDVVSFLKSTGEDKQLYIEWKASKSAASTGSNTNPVQTVRLFGVDIMKVTPSSGCGEKRRREMEFLSSECNKKQRIVGAL | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 11230116 | 11231120 | - | CmoCh18G010600.1 | Cmo18g01060 | 402833 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g01060 | 334 | Pfam | AP2 domain | 43 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g01060 | 334 | SUPERFAMILY | DNA-binding domain | 42 | 98 | IPR016177 | GO:0003677 | |
Cmo18g01060 | 334 | CDD | B3_DNA | 169 | 260 | IPR003340 | GO:0003677 | |
Cmo18g01060 | 334 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 15 | 334 | IPR044800 | GO:0003700 | |
Cmo18g01060 | 334 | ProSiteProfiles | AP2/ERF domain profile. | 43 | 98 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g01060 | 334 | ProSiteProfiles | B3 DNA-binding domain profile. | 170 | 278 | IPR003340 | GO:0003677 | |
Cmo18g01060 | 334 | SUPERFAMILY | DNA-binding pseudobarrel domain | 168 | 264 | IPR015300 | - | |
Cmo18g01060 | 334 | SMART | rav1_2 | 43 | 104 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g01060 | 334 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cmo18g01060 | 334 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Cmo18g01060 | 334 | Gene3D | AP2/ERF domain | 42 | 99 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo18g01060 | 334 | Pfam | B3 DNA binding domain | 170 | 274 | IPR003340 | GO:0003677 | |
Cmo18g01060 | 334 | MobiDBLite | consensus disorder prediction | 142 | 163 | - | - | |
Cmo18g01060 | 334 | PANTHER | PROTEIN RAV1, PUTATIVE-RELATED | 15 | 334 | - | - | |
Cmo18g01060 | 334 | CDD | AP2 | 42 | 97 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g01060 | 334 | SMART | B3_2 | 170 | 278 | IPR003340 | GO:0003677 | |
Cmo18g01060 | 334 | Gene3D | - | 158 | 287 | IPR015300 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo15g01051 | Cmo18g01060 | CCT | |
Cmo15g01051 | Cmo18g01060 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g00834 | Cmo-Chr11:4237476 | Cmo18g01060 | Cmo-Chr18:11230116 | 1.81E-54 | dispersed | |
Cmo15g01051 | Cmo-Chr15:6789326 | Cmo18g01060 | Cmo-Chr18:11230116 | 6.99E-130 | dispersed | |
Cmo17g00535 | Cmo-Chr17:5282653 | Cmo18g01060 | Cmo-Chr18:11230116 | 1.88E-46 | dispersed | |
Cmo18g01060 | Cmo-Chr18:11230116 | Cmo04g02102 | Cmo-Chr4:13302123 | 5.20E-130 | wgd | |
Cmo18g01060 | Cmo-Chr18:11230116 | Cmo04g01591 | Cmo-Chr4:8109511 | 6.02E-178 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11543 | PF02362 | B3 | 1.20E-26 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g01060 | K09287 | - | csv:101203784 | 533.102 |