Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g01065 | ATGCGTGGGGAGGATCAAGAACAGGATCATCATCATCAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTTCACCAACAACTACAAAACAACACCACCGATCATATTATCTATGGAGATCATCACCATCATGGAGCTGGAAGAGGGTTGATTTTCCCGGCCGACGTCGTGTCGCCGGTTCTAAACTCGTGGCCTCCGCTCAACCCATTTCTCATTCCTCCTCCACCTCCGCCTCCGCCACCGACATCGTTATGTTCGTCGTCGTCGTATGGTAATCTTTTTAACCGGAGACCGGCTAATTGTCTTCAATTTGCTTATGATGGAACTTCCTCAGCGGACCACTTGGGTCGAATCATATCAACCACGCTTGGACCAGTGGTTCATCATGGCTCAACTGCTCCCTTTGGATTACAAGCTGAGCTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCCAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCGGAGAGAAGAAGAAGAGAAAGAATCAATAATCATCTTGCTAAGCTCCGGAGCTTACTTCCTAGTACCACTAAAACAGACAAAGCTTCACTACTAGCAGAAGTAATACAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATCCCAACAGACATCGACGAGCTAACAGTGGACGATGCCTCAGACGAGATGATGATCAACGGCGCCAAATTTGTAATAAAAGCTTCTCTTTGCTGTGAGGACCGTTCAGATCTCCTCCCTGACCTCATCAAAACACTGAAATCCTTGCGCTTAAGAACCCTCAAAGCTGAAATCACAACCCTTGGTGGGCGCGTGAGAAATGTGCTGTTTGTTACCGGTGAAGACGACGAGCCATCAACTGACCATAATAACAACGATAATAACAATAATAATAATAATCCCAATTCAGACAGCCAACAACAACAACAACAACATAGTATCAGCTCAATTCAAGAAGCATTGAAGGCTGTGATGGAAAAAACAGGACCGGATGATTCTTCGTCAGGAAACATTAAACGACAAAGAACAAATAACATCAATATCCTTTAA | 1104 | 43.93 | MRGEDQEQDHHHQHQGECSQTIENMFQEQLLLHQQLQNNTTDHIIYGDHHHHGAGRGLIFPADVVSPVLNSWPPLNPFLIPPPPPPPPPTSLCSSSSYGNLFNRRPANCLQFAYDGTSSADHLGRIISTTLGPVVHHGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTDIDELTVDDASDEMMINGAKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVRNVLFVTGEDDEPSTDHNNNDNNNNNNNPNSDSQQQQQQHSISSIQEALKAVMEKTGPDDSSSGNIKRQRTNNINIL | 367 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 11283669 | 11286590 | - | CmoCh18G010650.1 | Cmo18g01065 | 402838 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g01065 | 367 | Gene3D | - | 159 | 220 | IPR036638 | GO:0046983 | |
Cmo18g01065 | 367 | Pfam | Helix-loop-helix DNA-binding domain | 167 | 213 | IPR011598 | GO:0046983 | |
Cmo18g01065 | 367 | MobiDBLite | consensus disorder prediction | 348 | 367 | - | - | |
Cmo18g01065 | 367 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 164 | 213 | IPR011598 | GO:0046983 | |
Cmo18g01065 | 367 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 66 | 367 | IPR045847 | GO:0003700|GO:0006355 | |
Cmo18g01065 | 367 | SMART | finulus | 170 | 219 | IPR011598 | GO:0046983 | |
Cmo18g01065 | 367 | MobiDBLite | consensus disorder prediction | 308 | 336 | - | - | |
Cmo18g01065 | 367 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 66 | 367 | - | - | |
Cmo18g01065 | 367 | CDD | bHLH_AtAIG1_like | 159 | 236 | - | - | |
Cmo18g01065 | 367 | MobiDBLite | consensus disorder prediction | 298 | 367 | - | - | |
Cmo18g01065 | 367 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 168 | 219 | IPR036638 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g01609 | Cmo18g01065 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00575 | Cmo-Chr5:2835064 | Cmo18g01065 | Cmo-Chr18:11283669 | 4.28E-30 | dispersed | |
Cmo06g00908 | Cmo-Chr6:6296596 | Cmo18g01065 | Cmo-Chr18:11283669 | 6.05E-36 | dispersed | |
Cmo18g01065 | Cmo-Chr18:11283669 | Cmo20g00239 | Cmo-Chr20:1161412 | 1.50E-31 | dispersed | |
Cmo18g01065 | Cmo-Chr18:11283669 | Cmo04g01609 | Cmo-Chr4:8196424 | 2.03E-139 | wgd | |
Cmo18g01065 | Cmo-Chr18:11283669 | Cmo04g02109 | Cmo-Chr4:13557420 | 3.60E-110 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11545 | PF00010 | HLH | 1.80E-12 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g01065 | - | - | cmo:103489248 | 436.802 |