Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01065 ATGCGTGGGGAGGATCAAGAACAGGATCATCATCATCAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTTCACCAACAACTACAAAACAACACCACCGATCATATTATCTATGGAGATCATCACCATCATGGAGCTGGAAGAGGGTTGATTTTCCCGGCCGACGTCGTGTCGCCGGTTCTAAACTCGTGGCCTCCGCTCAACCCATTTCTCATTCCTCCTCCACCTCCGCCTCCGCCACCGACATCGTTATGTTCGTCGTCGTCGTATGGTAATCTTTTTAACCGGAGACCGGCTAATTGTCTTCAATTTGCTTATGATGGAACTTCCTCAGCGGACCACTTGGGTCGAATCATATCAACCACGCTTGGACCAGTGGTTCATCATGGCTCAACTGCTCCCTTTGGATTACAAGCTGAGCTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCCAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCGGAGAGAAGAAGAAGAGAAAGAATCAATAATCATCTTGCTAAGCTCCGGAGCTTACTTCCTAGTACCACTAAAACAGACAAAGCTTCACTACTAGCAGAAGTAATACAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATCCCAACAGACATCGACGAGCTAACAGTGGACGATGCCTCAGACGAGATGATGATCAACGGCGCCAAATTTGTAATAAAAGCTTCTCTTTGCTGTGAGGACCGTTCAGATCTCCTCCCTGACCTCATCAAAACACTGAAATCCTTGCGCTTAAGAACCCTCAAAGCTGAAATCACAACCCTTGGTGGGCGCGTGAGAAATGTGCTGTTTGTTACCGGTGAAGACGACGAGCCATCAACTGACCATAATAACAACGATAATAACAATAATAATAATAATCCCAATTCAGACAGCCAACAACAACAACAACAACATAGTATCAGCTCAATTCAAGAAGCATTGAAGGCTGTGATGGAAAAAACAGGACCGGATGATTCTTCGTCAGGAAACATTAAACGACAAAGAACAAATAACATCAATATCCTTTAA 1104 43.93 MRGEDQEQDHHHQHQGECSQTIENMFQEQLLLHQQLQNNTTDHIIYGDHHHHGAGRGLIFPADVVSPVLNSWPPLNPFLIPPPPPPPPPTSLCSSSSYGNLFNRRPANCLQFAYDGTSSADHLGRIISTTLGPVVHHGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTDIDELTVDDASDEMMINGAKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVRNVLFVTGEDDEPSTDHNNNDNNNNNNNPNSDSQQQQQQHSISSIQEALKAVMEKTGPDDSSSGNIKRQRTNNINIL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11283669 11286590 - CmoCh18G010650.1 Cmo18g01065 402838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01065 367 Gene3D - 159 220 IPR036638 GO:0046983
Cmo18g01065 367 Pfam Helix-loop-helix DNA-binding domain 167 213 IPR011598 GO:0046983
Cmo18g01065 367 MobiDBLite consensus disorder prediction 348 367 - -
Cmo18g01065 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Cmo18g01065 367 PANTHER TRANSCRIPTION FACTOR BHLH30 66 367 IPR045847 GO:0003700|GO:0006355
Cmo18g01065 367 SMART finulus 170 219 IPR011598 GO:0046983
Cmo18g01065 367 MobiDBLite consensus disorder prediction 308 336 - -
Cmo18g01065 367 PANTHER TRANSCRIPTION FACTOR BHLH30 66 367 - -
Cmo18g01065 367 CDD bHLH_AtAIG1_like 159 236 - -
Cmo18g01065 367 MobiDBLite consensus disorder prediction 298 367 - -
Cmo18g01065 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 219 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01609 Cmo18g01065 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00575 Cmo-Chr5:2835064 Cmo18g01065 Cmo-Chr18:11283669 4.28E-30 dispersed
Cmo06g00908 Cmo-Chr6:6296596 Cmo18g01065 Cmo-Chr18:11283669 6.05E-36 dispersed
Cmo18g01065 Cmo-Chr18:11283669 Cmo20g00239 Cmo-Chr20:1161412 1.50E-31 dispersed
Cmo18g01065 Cmo-Chr18:11283669 Cmo04g01609 Cmo-Chr4:8196424 2.03E-139 wgd
Cmo18g01065 Cmo-Chr18:11283669 Cmo04g02109 Cmo-Chr4:13557420 3.60E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11545 PF00010 HLH 1.80E-12 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01065 - - cmo:103489248 436.802