Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01080 ATGTACAACCCTTATGCTAGCTCAACTTTATACTCCATCCGGAGTAAAGGGTATCTTCCTAATTACTTAAACGAGCGACCTATCTTCTTAAATGAAAGATGTAATGGAAACCCATTGCATCTTTCATCATCATCATCATGTTGTTCTTGTTGTGTTTGCTATGCATTTCCAACACACAGATTGCCTGTAGGCCCTAGCCTTTTATATGGGTCGAGGCAATCCACCCTGCTTAAATGGTCGATTTCTAGGAGGTTGATGTTGTGTGGCCGAAATCGGTTCTGTTATACGCTTCCGGAATATGGGCATGTTCTGGATTGTTGTGAGGTTCCTTTCTCTGTTGTTGATTGTAAGGCTTGTCATTGTAGTGAGGGAAGGAAATATAGACAATGTTGTTTGAATTCTGAGGGTGATTTTGAATGCGACGAATCGGATGGATTCGATGAAGAGGACATTGCTGAGGCAATGATCAGTTTGATAAGGGAGGGTTTTGGTAGTCAGGGGAAAAGTAGGTCGTCTAAGAGGGTGGAAGTGGGGAACCGAGGAAAGTCCGGAGCTAAGGAGAGTAGTTTAAGTTCGTCGAGAATAGTAGAACTCGAGAACAGGGCGAGGAGAGGTGTTGAGGATAAAAGGTTAAGTTCATTTGAAAAGATAAGAGTAGATAGAAAAAGAGAGAGTGGCGATCATCACAAGAAAGAAGAGAGGAAAAGCAAACAGAATAGTAAAGTCGGATCGATCGCGGTTGAGTTGAGGAAAAATGGATATAAACTGAATGGAGATCGGTTAGTTCATTCAAGAGGGGATAATCAGAGTTTGAGAAAAGAAGGGTCTACATGTTCATCTTATTATTCGCTTTCCTCCTCTGGGGATATTGAGGATGATGCTGAAGTGGAAGACAAGAACGTGCAATTCGTTGAGGAATTTTCCGGTGGGTACAGGTACGACTCCGTGAGTGATGTAGGAGAGAAATTAGATGGGCGGATCAAGGAAGAATACAAGAGTCAAGGAGATGATGAGAAGGGGCGAGAAGAGGAATCCGTGCAAGGTGATATTACAGAACGGAATCATTCTAATTGGCATTTGAGGAAGAACTCTGAGACGAAACCTAGTCAAGGATCAACACGAGTAACATCCTCTATAAGTGAAACCTCTGAGACGAACTCGAGATTGTCGAGGACTAGGGAAAGTGGTCATGTAAGTGCTTCAAGTTCCAAGAAGAAGTTTGTTGACAAGGAAGAGGAGTTGAAAACGGCGGCGATTTTGAACGAGCCATCGAAACAAAATGTATCACGTAATAAAGTGGGTGGTGTTTATATAAATGAAGGGAAAAAACTTGCTGAAGTATCAGAAATACGGCACGGTAAAGCTGAAGAAATTTCTCGATCTCAGAAACGACTTACTATTAAGAATGAAAAGCTAGAATTAGATGCAAATGTCATCAAGAAAGCAAGCAATAGTAGTCATGAATCTGTTCGTCCTGTCCTTCAAGAAGAAAGTTCGAGACGAACTTCGTCGGAAAATAGGAAAACCGAGAGAGAAAGGACCTCTCATCAGATAAGTCAGTCGAATGCAGTGATTAACGCAAGTGAAAGTACCGACGTACACGTAACTTCTAATCAAGAGGTTGAAGAAAGACATCATCAAATAGGAAATCATGCCATTGGGGAAATGGGTTCAACACAAAAATTTCTTCATCTTGGTGTTATATCAGTAGCCAAAGATGGTAATACCAACACGACCAACACCTCTGTTTCAAGTTCCGAAGTTAGAACACGAAACGAGGAACAAAATGCAGCATCAAACCTCGTGGCTAAAGACAAAAAGTCTTTGATGGTACATAAAGCTTCTCCGAGCGTTATCTCCAGAAAAGGTTCCCAAGATGCCACGAACGTTTCACTGCTTCACGGGACTGATAAAATATCTTCTACGTATTCTGAAAAAACATTTGAAAATAGAATCTTCGAGCAAGAAACTAATAGATCATCAGTGGAAAAAACTGTCAAGGAAACCGTAATAAGAACTGGTCGAAATAATCATCGTGTGGTGCAATCTGAATCAGGAAACGAGGTTAGAGATCATGCAACAAAGTTAAAAGTTCATGGATCGTTTAGTTCAAGTTCCGAAAGTAGTTACCAACGGATTGACGTGAATGAGCAAGAAAGTAAAGGCTCGCAGGCTATGTTAATGCCTCCGCCATCTCAGCTTGTAGCTAGAAATCCGCCACGAACAGATTCTACTAGTGAAATGGCAAGCCAAATAGTTTCGAGAAGAGCGTCAGGAAGTTCGGGTGCTTCCTACGTGCAGTCAGGGGGAAGTCCAGTTTTGCACAGCAAGTCCTACAGAGAAAGCGGGGTAGACGAGAGTACTGGGGAGCCAACCTACCTTGTCAATCCTGGTGATACTCTAGGTTCAGCTGACCATTTAGAGAGGTCGTCTGCACCGTTCGTTGGGGAGTCCATTGAGAAGTCCAGGAATGAACCGTTGATTTCCGAAATCCAGAAGGAAGACAATGTCTCTGAAGTAGATTTACTGCATGAAGAGAAGCATGGACAAAAGAATTTTGTAGATTATCAAACGAAGGACCATGACTCGAAGCTCTCATCACGGAGTTCGGGAAGCAAGGGTCCTTCTGATGAAATGTGGCATGTAATGGACTCGACTACTGAGCAGCAGCCTCCGAAAACTGAAGATCCTGAGACTAGTGCACATAGTGAGAATGCAATTGTCAAGAGAAGTGGCAGATCGTTGTGGAATGTCATTTCAGATATAGTTCGTCTCCGTTGGGCTTCACGTGCCGAAACCTCTGATTCAGCTGTAAGATCAGGTGGAAGAAATTCACCAAACGAGTCTGTTAGTAACGAGACATGGTTCTCTGGCCGTGAACATGAAGAAACTGATAATACAAGAATCGGAAGAACCGCAGTTTCTCAATTCACTTCGTCGGATCGGTTAGAAGAACCGAAAAATACATATCACGAAGTAGATACCCCTCCTTCCCCAAATGTAATGGGGATCGAGCCATCAAGTGAAACTTTGTTAATTTCTGGAGAGGCGATCGTAACAGATGGTAGGAAGGTTGACGTTATTTCTTCTGGTTCGGATATCGAACGGTCATCATTACAACTGTCTCCCCGAGGTTCTCTCGTTATCGATGAAATTTCTCATAGTGGTAAAACGGATGCCTCTGCAAGCAGCTCGGCTGAGCGGATGGGGCGTTCTTCTGATGCAACGTTACTAGAGATATCAACAACTGGAACCAAGGATGGGGAAGTGAAACAAAGGAAGCTTCAAAGAAACAAGCAAGTTCTTAAAGATCGATTTGACGAATGGGAAGAAGCATACATACTCGAGACTGAGCAGCGAAAAATGGACGAAATGTTCATGAGGGAAGCGCTTGCTGAAGCCAGGAAGGCGGCTGATACCTGGGAGGTGCCTGTGGGAGCAGTATTGGTGAAACATGGAAAAATTATCGCTCGTGGCTGCAACCTGGTCGAGGAGCTGCGAGATTCCACAGCCCATGCCGAAATGATTTGTATTCGGGAGGCTTCAAAGCAATTAAAGTCATGGAGACTTGCTGAGACGACGCTGTACGTGACGCTTGAACCGTGCCCTATGTGTGCTGGAGCGATACTACAAGCACGAGTTGAAAACCTTGTATGGGGAGCACCAAATAAGCTTCTTGGAGCTGATGGCAGCTGGATCAGGTTCATCAATGGATACTCATCCATTCTCGTTTGCTCTGTGCTTTGTTTGAGTCTTTACAGACTTTTTCCTGATGGTGGCGAGGTAAATGCCTCGGAACAGGCTGAGAAACCTGCTGCACCTGTTCATCCGTTCCACCCGAAAATGACGATACGACGAGGTATATTGGCGTCGGAATGTTCTGATGTAATGCAACACTTCTTTCAGCTAAGGAGGAGAAAGAAAAAGAAGGAAAACACTCCACCTCTGACCATTGCTCATCATCATCATCCATCAAAATTTATTTCTAAGATGCATAATATTTTTCACATATTGTTCTGTTTGTAA 4026 43.42 MYNPYASSTLYSIRSKGYLPNYLNERPIFLNERCNGNPLHLSSSSSCCSCCVCYAFPTHRLPVGPSLLYGSRQSTLLKWSISRRLMLCGRNRFCYTLPEYGHVLDCCEVPFSVVDCKACHCSEGRKYRQCCLNSEGDFECDESDGFDEEDIAEAMISLIREGFGSQGKSRSSKRVEVGNRGKSGAKESSLSSSRIVELENRARRGVEDKRLSSFEKIRVDRKRESGDHHKKEERKSKQNSKVGSIAVELRKNGYKLNGDRLVHSRGDNQSLRKEGSTCSSYYSLSSSGDIEDDAEVEDKNVQFVEEFSGGYRYDSVSDVGEKLDGRIKEEYKSQGDDEKGREEESVQGDITERNHSNWHLRKNSETKPSQGSTRVTSSISETSETNSRLSRTRESGHVSASSSKKKFVDKEEELKTAAILNEPSKQNVSRNKVGGVYINEGKKLAEVSEIRHGKAEEISRSQKRLTIKNEKLELDANVIKKASNSSHESVRPVLQEESSRRTSSENRKTERERTSHQISQSNAVINASESTDVHVTSNQEVEERHHQIGNHAIGEMGSTQKFLHLGVISVAKDGNTNTTNTSVSSSEVRTRNEEQNAASNLVAKDKKSLMVHKASPSVISRKGSQDATNVSLLHGTDKISSTYSEKTFENRIFEQETNRSSVEKTVKETVIRTGRNNHRVVQSESGNEVRDHATKLKVHGSFSSSSESSYQRIDVNEQESKGSQAMLMPPPSQLVARNPPRTDSTSEMASQIVSRRASGSSGASYVQSGGSPVLHSKSYRESGVDESTGEPTYLVNPGDTLGSADHLERSSAPFVGESIEKSRNEPLISEIQKEDNVSEVDLLHEEKHGQKNFVDYQTKDHDSKLSSRSSGSKGPSDEMWHVMDSTTEQQPPKTEDPETSAHSENAIVKRSGRSLWNVISDIVRLRWASRAETSDSAVRSGGRNSPNESVSNETWFSGREHEETDNTRIGRTAVSQFTSSDRLEEPKNTYHEVDTPPSPNVMGIEPSSETLLISGEAIVTDGRKVDVISSGSDIERSSLQLSPRGSLVIDEISHSGKTDASASSSAERMGRSSDATLLEISTTGTKDGEVKQRKLQRNKQVLKDRFDEWEEAYILETEQRKMDEMFMREALAEARKAADTWEVPVGAVLVKHGKIIARGCNLVEELRDSTAHAEMICIREASKQLKSWRLAETTLYVTLEPCPMCAGAILQARVENLVWGAPNKLLGADGSWIRFINGYSSILVCSVLCLSLYRLFPDGGEVNASEQAEKPAAPVHPFHPKMTIRRGILASECSDVMQHFFQLRRRKKKKENTPPLTIAHHHHPSKFISKMHNIFHILFCL 1341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11354204 11358561 - CmoCh18G010800.1 Cmo18g01080 402853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01080 1341 Coils Coil 455 475 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 933 954 - -
Cmo18g01080 1341 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 884 1331 - -
Cmo18g01080 1341 Pfam MafB19-like deaminase 1123 1223 IPR028883 GO:0002100|GO:0008251
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 482 521 - -
Cmo18g01080 1341 PANTHER TRNA(ADENINE(34)) DEAMINASE, CHLOROPLASTIC 884 1331 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 1053 1075 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 849 906 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 849 867 - -
Cmo18g01080 1341 Hamap tRNA-specific adenosine deaminase [tadA]. 1127 1305 IPR028883 GO:0002100|GO:0008251
Cmo18g01080 1341 CDD nucleoside_deaminase 1127 1234 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 737 775 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 363 386 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 969 983 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 163 193 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 576 595 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 698 806 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 258 279 - -
Cmo18g01080 1341 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 1121 1243 IPR002125 -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 330 410 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 1056 1075 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 698 727 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 493 515 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 931 1003 - -
Cmo18g01080 1341 Coils Coil 1092 1112 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 330 362 - -
Cmo18g01080 1341 Gene3D Cytidine Deaminase, domain 2 1110 1316 - -
Cmo18g01080 1341 SUPERFAMILY Cytidine deaminase-like 1105 1309 IPR016193 GO:0003824
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 219 239 - -
Cmo18g01080 1341 MobiDBLite consensus disorder prediction 219 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01080 K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] - csv:101215576 1794.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00405 Cmo-Chr10:1827009 Cmo18g01080 Cmo-Chr18:11354204 7.34E-15 dispersed
Cmo11g01017 Cmo-Chr11:5537941 Cmo18g01080 Cmo-Chr18:11354204 3.84E-17 dispersed
Cmo18g01080 Cmo-Chr18:11354204 Cmo11g00364 Cmo-Chr11:1791952 2.97E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01080 Cmo_Chr18 FPKM 9.066882 9.392815 1.450028 1.554927 0.368722 0.252489 0.468715 11.009177 9.894175 9.637613