Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01081 ATGAGCGGTGGCAGAAGGAGGAAGCTGCATTTTAGCAAGATCTACTCGTTTGCGTGTGGGAAAGCTTCTTTGAAAGATGATCACTCACAAATTGGGGGTCCTGGGTTTTCTCGAGTGGTGTTCTGTAATGAAGCTGAGTGTATTGAGGCTGAAATACGTAACTATGTTGACAATCATGTTAGTACCACTAAGTATACTTTGGCTACTTTCTTGCCTAAGTCATTGTTTGAGCAATTCAGGAGGGTGGCTAATTTCTTCTTCTTAGTTACTGGGATTCTTGCTTTTACTCCTCTTGCTCCTTACACAGCCGTCAGTGCAATTCTTCCTCTTATTATTGTCATTTCAGCTACTATGATCAAGGAAGGTATTGAAGATTGGAGGCGGAAGAAACAGGATATTCAGGTCAACACTAGAAAGGTTAAAGTGCATCAAGGTAATGGAGTTTTTGCTCATACAGAGTGGAAAACTTTGAGGGTGGGTAATGTAGTGAGAGTGGAAAAGGATGAATTCTTTCCAGCAGATATCATCTTGCTTTCATCCAGTTACGAGGATGCCGTCTGCTATGTCGAGACAATGAACCTCGACGGTGAGACAAATTTGAAACTAAAACAAGCATTGGAGGTAACTTCGCGTATGAACAAGGATTCGATCTTCGAAAGCTTTAAGGCTATCATAAAATGTGAGGATCCAAATGCAAATTTATACAGTTTTGTTGGAAGTATGGAGTTGGAAGAGCAACAATATCCGCTATCACCTCAACAACTACTCCTTCGAGACTCGAAACTCCGGAATACAGATTATATATATGGGGTTGTTGTCTTTACGGGTCGCGACACAAAGGTTTTTCAAAATTCTACTGACCCGCCTTCGAAAAGAAGCAAAGTCGAGAGGAAAATGGATCAAATTATATACTTTTTGTTTGGTCTTCTGTTCTTGCTTGCTCTTACAGGATCTATCTTTTTTGGCTTTGTGACTGGCGATGATTTGAACAATGGGAAAATGAAGAGATGGTATCTCAGGCCTGATGATGCTGAAGTTTTCTATGATTCAAAAAGAGCTCCATTAGCTGCAATTTTCCATTTTCTTACAGCACTGATGTTGTATAACTACTTCATTCCGATATCACTCTACGTGTCGATCGAGATCGTGAAAGTTCTTCAGAGCATATTCATCAATCAAGATATTAATATGTACTACGAAGAAGCTAATAAGCCTGCACGTGCTCGCACCTCGAATTTGAATGAAGAACTTGGTCAAGTTGATACAGTACTTTCTGACAAGACGGGAACTCTGACATGTAATTCGATGGAGTTCATCAAGTGTTCAGTGGCCGGGACGGCTTATGGTCGTGGTTTCACAGAGGTAGAAAGGGCCATTGGTGGACTGAAGAATTCACCATTGTATGAAGCTGTAAATGGGGGGAATCAACAAGAGGATGTCACTAAGAAAACTTCACATGTCAAGGGCTTTAACTTTCAAGATGATAGAATTATGAATGGGAACTGGGTTTATGAGCCTAATGCAAATGTCATCCAAATGTTTTTTCGTCTTCTCGCCACTTGTCATACGGCGATACCTGAAATCAACGAGCACAGTGGTGAGGTGTCTTATGAGGCCGAATCACCGGATGAAGCAGCGTTTGTGATTGCAGCTAGGGAGCTAGGCTTTGAGTTCTATAAAAGAACACAGTCAAGCATATCACTCCATGAGTTTGAACCTTCATTAGGCAAGAAAGTTGATAGGACATATAAACTGTTGCATGTTTTGGAGTTCAATAGCACGAGAAAGCGGATGTCTGTCATAATAAGAAACGACGAGGGGAAAATAATATTATTCTGTAAAGGTGCAGACAGTGTCATGTTTGAAAGGCTTGGAAAGAATGGAAGGGAGTTTGAAGAGAGGACTAAGGAACATGTCAGCGAGTACGCCGATGCCGGGTTGAGGACTTTGATACTCGCCTACCGTGAGCTTGACGAGGAAGAATACAGAGAATTTCACCATAAGTTCACTATGGCCAAAACCTCAGTTGATGCAGATAGAGAATCATTGATTGATAAACTTACAGACAAAATTGAGAGGAATCTAATTCTTCTTGGTGCCACTGCTGTTGAGGACAAACTTCAAAATGGGGTTCCCGAGTGCATCGACAGGCTCGCTCAGGCGGGAATTAAGATCTGGGTTTTGACGGGCGACAAAATGGAGACTGCCATAAATATTGGTTTTGCCTGTAGCTTACTAAGAGAAGATATGAAGCAGATTGTCATTACTCTGGAGTCATCAGAAATTCAGGCAATAGAGAAGTCAGGGGATAAGACTTCCATCATCAAGGCGTCGAGGCAATGTGTTCGTGATCAGATTACTCGAGGGAGAGCTCAGATAAATTCATCAAGTGGGTCATCCGAAGCATTTGCATTAATCATTGATGGAAAATCGCTTTCTTATGCTTTAGAGGACAGTATGAAGGCATCGTTTCTCGATCTAACGATACGTTGCGCTTCTGTTATTTGCTGCCGTTCATCTCCAAAACAGAAGGCATTGGTAACAAGGTTGGTTAAAACTGGAACACGAAAAACAACTTTAGCTATCGGCGATGGTGCTAACGATGTAGGAATGCTTCAAGAAGCGGATATTGGAGTCGGAATTAGTGGTGCTGAAGGAATGCAGGCCGTTATGTCGAGCGACGTTGCGATTGCTCAGTTTAAATATTTAGAGCGCCTGCTTCTCGTGCATGGACATTGGTGCTACAGAAGGATATCATCAATGATTTGCTACTTCTTCTATAAGAATATTACTTTTGGTTTTACCATATTCTTATACGAAGCATTCTCATCATTCTCTGGGGAACCTGTATATAATGATTGGTTTTTATCACTTTACAACGTTTTCTTCTCGTCGCTTCCAGTCGTAGCTTTGGGAGTCTTCGATCAGGACGTATCTGCAAGGCTCTGCCTCCAGTTTCCTCTCTTATACCAACAAGGGGTGCAGAATGTTCATTTCAGCTGGCTCCGAATACTCAGTTGGATGTTTAATGGATTGTGCAGTGCTGTGATCATTTTCTTCCTTTGCACTGGCGCACTTGAGCATCAGGCATTCAACTCCGATGGGAAACCTGCAGGGCGGGAAATTCTGGGTGCGACGATGTACTCTTGTGTCGTTTGGGTTGTGAACTTGCAAATGGCGCTCGCTGTTAGCTACTTCACCTTGATACAACATCTTTTCATCTGGGGCTCCATTTCAATTTGGTACATTTTTCTCCTGATTTATGAGTCCATGACCCCCACCCTTTCAACCAATGCTTACAAGATCTTCACTGAAGTCCTTGCCCCTGGCCCTTCCTACTGGCTTGTCCTTTTCTTTGTGGTGATCTCAACACTCATTCCTTACTTCTCCTACTCAGCATTACAGATGAGGTTCTTTCCTATGTATCATCAAATGATTTTATGGATTAGAAATGAAGGGCAACTAGACAACCAGGAGTACTGTAATATGTTGTGGAAGTACAAATTCCGATCGACGAGTGTAGGTTCCACAGCACGGTTAGCAGCCAAAAGGAACAACTCAAAACAAAGAAACCAGACTTATATTTGA 3588 42.11 MSGGRRRKLHFSKIYSFACGKASLKDDHSQIGGPGFSRVVFCNEAECIEAEIRNYVDNHVSTTKYTLATFLPKSLFEQFRRVANFFFLVTGILAFTPLAPYTAVSAILPLIIVISATMIKEGIEDWRRKKQDIQVNTRKVKVHQGNGVFAHTEWKTLRVGNVVRVEKDEFFPADIILLSSSYEDAVCYVETMNLDGETNLKLKQALEVTSRMNKDSIFESFKAIIKCEDPNANLYSFVGSMELEEQQYPLSPQQLLLRDSKLRNTDYIYGVVVFTGRDTKVFQNSTDPPSKRSKVERKMDQIIYFLFGLLFLLALTGSIFFGFVTGDDLNNGKMKRWYLRPDDAEVFYDSKRAPLAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDINMYYEEANKPARARTSNLNEELGQVDTVLSDKTGTLTCNSMEFIKCSVAGTAYGRGFTEVERAIGGLKNSPLYEAVNGGNQQEDVTKKTSHVKGFNFQDDRIMNGNWVYEPNANVIQMFFRLLATCHTAIPEINEHSGEVSYEAESPDEAAFVIAARELGFEFYKRTQSSISLHEFEPSLGKKVDRTYKLLHVLEFNSTRKRMSVIIRNDEGKIILFCKGADSVMFERLGKNGREFEERTKEHVSEYADAGLRTLILAYRELDEEEYREFHHKFTMAKTSVDADRESLIDKLTDKIERNLILLGATAVEDKLQNGVPECIDRLAQAGIKIWVLTGDKMETAINIGFACSLLREDMKQIVITLESSEIQAIEKSGDKTSIIKASRQCVRDQITRGRAQINSSSGSSEAFALIIDGKSLSYALEDSMKASFLDLTIRCASVICCRSSPKQKALVTRLVKTGTRKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDVAIAQFKYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYEAFSSFSGEPVYNDWFLSLYNVFFSSLPVVALGVFDQDVSARLCLQFPLLYQQGVQNVHFSWLRILSWMFNGLCSAVIIFFLCTGALEHQAFNSDGKPAGREILGATMYSCVVWVVNLQMALAVSYFTLIQHLFIWGSISIWYIFLLIYESMTPTLSTNAYKIFTEVLAPGPSYWLVLFFVVISTLIPYFSYSALQMRFFPMYHQMILWIRNEGQLDNQEYCNMLWKYKFRSTSVGSTARLAAKRNNSKQRNQTYI 1195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11365450 11371905 + CmoCh18G010810.1 Cmo18g01081 402854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01081 1195 SFLD Haloacid Dehalogenase 408 913 - -
Cmo18g01081 1195 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1188 - -
Cmo18g01081 1195 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 497 664 IPR023299 GO:0000166
Cmo18g01081 1195 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 834 944 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo18g01081 1195 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Cmo18g01081 1195 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Cmo18g01081 1195 SUPERFAMILY Calcium ATPase, transduction domain A 142 283 IPR008250 -
Cmo18g01081 1195 Gene3D - 546 675 IPR023299 GO:0000166
Cmo18g01081 1195 Pfam Phospholipid-translocating P-type ATPase C-terminal 890 1140 IPR032630 -
Cmo18g01081 1195 SUPERFAMILY Calcium ATPase, transmembrane domain M 52 1140 IPR023298 -
Cmo18g01081 1195 SUPERFAMILY HAD-like 419 917 IPR036412 -
Cmo18g01081 1195 Gene3D - 694 902 IPR023214 -
Cmo18g01081 1195 SFLD p-type atpase 408 913 IPR044492 -
Cmo18g01081 1195 Pfam Cation transport ATPase (P-type) 529 625 - -
Cmo18g01081 1195 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 55 1146 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cmo18g01081 1195 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1188 - -
Cmo18g01081 1195 Gene3D - 115 286 - -
Cmo18g01081 1195 CDD P-type_ATPase_APLT_Dnf-like 57 1022 - -
Cmo18g01081 1195 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Cmo18g01081 1195 PRINTS P-type cation-transporting ATPase superfamily signature 862 881 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01623 Cmo18g01081 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00028 Cmo-Chr18:119077 Cmo18g01081 Cmo-Chr18:11365450 0 dispersed
Cmo18g01081 Cmo-Chr18:11365450 Cmo03g00303 Cmo-Chr3:4214054 0 dispersed
Cmo04g01044 Cmo-Chr4:5203567 Cmo18g01081 Cmo-Chr18:11365450 0 transposed
Cmo15g01500 Cmo-Chr15:10177017 Cmo18g01081 Cmo-Chr18:11365450 0 transposed
Cmo13g01090 Cmo-Chr13:8998731 Cmo18g01081 Cmo-Chr18:11365450 0 wgd
Cmo18g01081 Cmo-Chr18:11365450 Cmo04g01623 Cmo-Chr4:8287111 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01081 K01530 - csv:101207148 2099.32