Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g01082 | ATGGCGGACGTAGCACCGGTGCCTAATTCGTCTCCATCGCCGGCTTCTCCCTCCACTCCATCTACTCCGCCGCCCAGTACTCCGTCACCGTTGCCACCGCAACCTCCTTCTCCGCCGCCGCTACAATCGCCTCCTCCGGATCCTTCTGGCCCTTCAATTCCGACTCCGTCCCCATCAGGCCAGTCATCTCCTCCTCCGCCGTCTCGTCAACCATCTGCTACTTCACCGCCACCTGCTTCTGGAACTCCGCCCCCTGTAACACCCGCATTGTCTCCTCCGCCGCCTCGGACTGTTCCGCCTGCAACTCCACCACCAACTCCGTCCAGTGCTCCACCCCCGTTAACACCGGATCCCACACCACCATCAGCAACCCCACCAGTAAGCTCCCCTCCACCAACGTCATCTAATCCCCCACCACCAAATTCACCTCCACCTCCTGTAGCAGAGCCTCCTCAAACCCCTCCTCCACAGTCATCAAACCCTCCTCAACTCTCATCTCCGCCACCTCTGCCACCACCACCACAAGAAAACCCCTCGGATAATCCATCGCCGCCGCCCACAGCCCCAGTTGAGAATCCTCCCCCAACACCACCATCAGCACCTCCAGAAACTTCACCTCAACCCCCAGCGTCAATACCTCCTAGAAACTCACCTCCACCTCAAAGGCTCACTTCTCCTCCTCCTCCCAGTGATCCCCTAGCTTCAAGTCCTCCCCCTCCCAGTGACCCCCCAGCTTCAAGTCCTCCCAAGCCATCGCCGCCCGCATCAATTTCGCCTCCTCCACCATCCCTTGTTTCTCCTCCAGTATCGTCTAAAACCCCAACATTGCCGCCAGGAAATCCCACGGACGATGGTTCGGGTCCTAATGGCGGAGTAAACTCGAATTCGAACAGCAATGGAGGAATAGATACTGGGGGTGTGATTGCAATTGGTGTAGTGGCTGGAATTGTAGTGCTTGCCATAGTTGGTTTTGTTGTATGGTACATCAGGAAGCCAAGAAAAAATGATTCTGGTCGTAGGGGTTACATTATACCATCTTCTATGGGCTCCTCACCTAAGTCAGAATCCCTTATGAAGGTCCATTCCACACTTCACCAAGACAGACATGGTGGTGGAACATTCTCTCCAAAAGAGTTTGGTGGGTTGGGCAATTCAAGGTCATTCTTTACATATGAAGAACTTTTCAAAGCAACAAATGCATTTTCTGCTCAGAATCTTTTGGGAGAAGGTGGATTTGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGAGAGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGTCAGGGTGAGCAGGAATTCAAAGCTGAAGTCGAGATAATTGGTCGCGTACACCACCGCCATTTGGTTTCTCTTGTGGGCTACTGCATTTCAGAGCATCAGAGGTTGCTGGTTTATGATTATGTGTGTAACAATTCCCTTTACTACCATCTTCATGTTAAAGGGGACGACCAGCTTGTTCTGGACTGGGCAAGACGCATTAAGATTGCAGCTGGGGCAGCCCGGGGAATAGCTTATCTTCATGAAGACTGCCATCCTCGAATTATCCACCGTGATATCAAATCTTCAAACATTCTTCTAGATGAAAATTTTGAAGCTCGGGTTTCAGACTTCGGGCTGGCTAAATTAGCTCTTGATGCACAGACTCATATAACCACTCGTGTCGTGGGAACTTTCGGATATGTTGCCCCTGAATATGCATCGAGTGGGAAGTTAACTGAGAGATCGGATGTATATTCTTTTGGAGTCGTACTTCTCGAGCTGATTACTGGTCGAAAGGCCGTTGATGCATCCCAACCGATGGGGGACGAGAGCCTTGTTGAATGGGGTCGGCCTTTACTAAACCATGCTCTCCACAGCCAAGATTTCGAAAGGTTGGTGGACCCAAGGCTTGAAAGGAACTATGTTGAGAGTGAAATGTTGAAAATGATAGGAATAGCTGCTGCTTGCGTTCGGCATGCGTCCGCAAAGAGACCACAGATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGCTGCAACAGATTTAAGTAATGGAATGAGATTCGGGGAGAGTCAAGCCTTCGACTCCGGTCAAAAGTCTGCTGAGATTAGGTTTTTCCGAATGCTGGCATTTGGAAACCAAGATTACAGCTCAGACTTTTATAGCCAAGGAAGGCTTTTTCTCATGCTGACTGAAACTCAGGCTATGCTTCTGCTCTTGAACATGGCAGATTTGCTCAAGAGCAAGAAAACAGCATCCTATCCAATGTGTACACGTCGAAGAAAGCTTCTATTTTCGACGATAAACAGTGAAGATCGAGACTGA | 2331 | 50.15 | MADVAPVPNSSPSPASPSTPSTPPPSTPSPLPPQPPSPPPLQSPPPDPSGPSIPTPSPSGQSSPPPPSRQPSATSPPPASGTPPPVTPALSPPPPRTVPPATPPPTPSSAPPPLTPDPTPPSATPPVSSPPPTSSNPPPPNSPPPPVAEPPQTPPPQSSNPPQLSSPPPLPPPPQENPSDNPSPPPTAPVENPPPTPPSAPPETSPQPPASIPPRNSPPPQRLTSPPPPSDPLASSPPPPSDPPASSPPKPSPPASISPPPPSLVSPPVSSKTPTLPPGNPTDDGSGPNGGVNSNSNSNGGIDTGGVIAIGVVAGIVVLAIVGFVVWYIRKPRKNDSGRRGYIIPSSMGSSPKSESLMKVHSTLHQDRHGGGTFSPKEFGGLGNSRSFFTYEELFKATNAFSAQNLLGEGGFGSVYKGYLPDGREVAVKELKIGGGQGEQEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVCNNSLYYHLHVKGDDQLVLDWARRIKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDAQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDASQPMGDESLVEWGRPLLNHALHSQDFERLVDPRLERNYVESEMLKMIGIAAACVRHASAKRPQMGQVVRAFDSLAATDLSNGMRFGESQAFDSGQKSAEIRFFRMLAFGNQDYSSDFYSQGRLFLMLTETQAMLLLLNMADLLKSKKTASYPMCTRRRKLLFSTINSEDRD | 776 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 11371917 | 11376628 | - | CmoCh18G010820.1 | Cmo18g01082 | 402855 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g01082 | 776 | MobiDBLite | consensus disorder prediction | 1 | 298 | - | - | |
Cmo18g01082 | 776 | SUPERFAMILY | Protein kinase-like (PK-like) | 384 | 674 | IPR011009 | - | |
Cmo18g01082 | 776 | SMART | serkin_6 | 401 | 654 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo18g01082 | 776 | ProSiteProfiles | Protein kinase domain profile. | 401 | 679 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo18g01082 | 776 | MobiDBLite | consensus disorder prediction | 10 | 275 | - | - | |
Cmo18g01082 | 776 | MobiDBLite | consensus disorder prediction | 276 | 298 | - | - | |
Cmo18g01082 | 776 | ProSitePatterns | Protein kinases ATP-binding region signature. | 407 | 429 | IPR017441 | GO:0005524 | |
Cmo18g01082 | 776 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 134 | 726 | - | - | |
Cmo18g01082 | 776 | Gene3D | Transferase(Phosphotransferase) domain 1 | 478 | 694 | - | - | |
Cmo18g01082 | 776 | CDD | STKc_IRAK | 407 | 679 | - | - | |
Cmo18g01082 | 776 | Gene3D | Phosphorylase Kinase; domain 1 | 376 | 476 | - | - | |
Cmo18g01082 | 776 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 523 | 535 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo18g01082 | 776 | PRINTS | Proline rich extensin signature | 54 | 71 | - | - | |
Cmo18g01082 | 776 | PRINTS | Proline rich extensin signature | 12 | 33 | - | - | |
Cmo18g01082 | 776 | PRINTS | Proline rich extensin signature | 33 | 49 | - | - | |
Cmo18g01082 | 776 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 | 134 | 726 | - | - | |
Cmo18g01082 | 776 | Pfam | Protein tyrosine and serine/threonine kinase | 404 | 674 | IPR001245 | GO:0004672|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo15g01052 | Cmo18g01082 | CCT | |
Cmo04g01626 | Cmo18g01082 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo18g00802 | Cmo-Chr18:9482250 | Cmo18g01082 | Cmo-Chr18:11371917 | 1.14E-144 | dispersed | |
Cmo18g01082 | Cmo-Chr18:11371917 | Cmo04g00836 | Cmo-Chr4:4161753 | 8.18E-130 | dispersed | |
Cmo15g00209 | Cmo-Chr15:1017698 | Cmo18g01082 | Cmo-Chr18:11371917 | 0 | wgd | |
Cmo18g01082 | Cmo-Chr18:11371917 | Cmo04g01626 | Cmo-Chr4:8295235 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75078 | PF07714 | PK_Tyr_Ser-Thr | 1.80E-43 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g01082 | - | - | cmo:103489228 | 729.169 |