Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01082 ATGGCGGACGTAGCACCGGTGCCTAATTCGTCTCCATCGCCGGCTTCTCCCTCCACTCCATCTACTCCGCCGCCCAGTACTCCGTCACCGTTGCCACCGCAACCTCCTTCTCCGCCGCCGCTACAATCGCCTCCTCCGGATCCTTCTGGCCCTTCAATTCCGACTCCGTCCCCATCAGGCCAGTCATCTCCTCCTCCGCCGTCTCGTCAACCATCTGCTACTTCACCGCCACCTGCTTCTGGAACTCCGCCCCCTGTAACACCCGCATTGTCTCCTCCGCCGCCTCGGACTGTTCCGCCTGCAACTCCACCACCAACTCCGTCCAGTGCTCCACCCCCGTTAACACCGGATCCCACACCACCATCAGCAACCCCACCAGTAAGCTCCCCTCCACCAACGTCATCTAATCCCCCACCACCAAATTCACCTCCACCTCCTGTAGCAGAGCCTCCTCAAACCCCTCCTCCACAGTCATCAAACCCTCCTCAACTCTCATCTCCGCCACCTCTGCCACCACCACCACAAGAAAACCCCTCGGATAATCCATCGCCGCCGCCCACAGCCCCAGTTGAGAATCCTCCCCCAACACCACCATCAGCACCTCCAGAAACTTCACCTCAACCCCCAGCGTCAATACCTCCTAGAAACTCACCTCCACCTCAAAGGCTCACTTCTCCTCCTCCTCCCAGTGATCCCCTAGCTTCAAGTCCTCCCCCTCCCAGTGACCCCCCAGCTTCAAGTCCTCCCAAGCCATCGCCGCCCGCATCAATTTCGCCTCCTCCACCATCCCTTGTTTCTCCTCCAGTATCGTCTAAAACCCCAACATTGCCGCCAGGAAATCCCACGGACGATGGTTCGGGTCCTAATGGCGGAGTAAACTCGAATTCGAACAGCAATGGAGGAATAGATACTGGGGGTGTGATTGCAATTGGTGTAGTGGCTGGAATTGTAGTGCTTGCCATAGTTGGTTTTGTTGTATGGTACATCAGGAAGCCAAGAAAAAATGATTCTGGTCGTAGGGGTTACATTATACCATCTTCTATGGGCTCCTCACCTAAGTCAGAATCCCTTATGAAGGTCCATTCCACACTTCACCAAGACAGACATGGTGGTGGAACATTCTCTCCAAAAGAGTTTGGTGGGTTGGGCAATTCAAGGTCATTCTTTACATATGAAGAACTTTTCAAAGCAACAAATGCATTTTCTGCTCAGAATCTTTTGGGAGAAGGTGGATTTGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGAGAGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGTCAGGGTGAGCAGGAATTCAAAGCTGAAGTCGAGATAATTGGTCGCGTACACCACCGCCATTTGGTTTCTCTTGTGGGCTACTGCATTTCAGAGCATCAGAGGTTGCTGGTTTATGATTATGTGTGTAACAATTCCCTTTACTACCATCTTCATGTTAAAGGGGACGACCAGCTTGTTCTGGACTGGGCAAGACGCATTAAGATTGCAGCTGGGGCAGCCCGGGGAATAGCTTATCTTCATGAAGACTGCCATCCTCGAATTATCCACCGTGATATCAAATCTTCAAACATTCTTCTAGATGAAAATTTTGAAGCTCGGGTTTCAGACTTCGGGCTGGCTAAATTAGCTCTTGATGCACAGACTCATATAACCACTCGTGTCGTGGGAACTTTCGGATATGTTGCCCCTGAATATGCATCGAGTGGGAAGTTAACTGAGAGATCGGATGTATATTCTTTTGGAGTCGTACTTCTCGAGCTGATTACTGGTCGAAAGGCCGTTGATGCATCCCAACCGATGGGGGACGAGAGCCTTGTTGAATGGGGTCGGCCTTTACTAAACCATGCTCTCCACAGCCAAGATTTCGAAAGGTTGGTGGACCCAAGGCTTGAAAGGAACTATGTTGAGAGTGAAATGTTGAAAATGATAGGAATAGCTGCTGCTTGCGTTCGGCATGCGTCCGCAAAGAGACCACAGATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGCTGCAACAGATTTAAGTAATGGAATGAGATTCGGGGAGAGTCAAGCCTTCGACTCCGGTCAAAAGTCTGCTGAGATTAGGTTTTTCCGAATGCTGGCATTTGGAAACCAAGATTACAGCTCAGACTTTTATAGCCAAGGAAGGCTTTTTCTCATGCTGACTGAAACTCAGGCTATGCTTCTGCTCTTGAACATGGCAGATTTGCTCAAGAGCAAGAAAACAGCATCCTATCCAATGTGTACACGTCGAAGAAAGCTTCTATTTTCGACGATAAACAGTGAAGATCGAGACTGA 2331 50.15 MADVAPVPNSSPSPASPSTPSTPPPSTPSPLPPQPPSPPPLQSPPPDPSGPSIPTPSPSGQSSPPPPSRQPSATSPPPASGTPPPVTPALSPPPPRTVPPATPPPTPSSAPPPLTPDPTPPSATPPVSSPPPTSSNPPPPNSPPPPVAEPPQTPPPQSSNPPQLSSPPPLPPPPQENPSDNPSPPPTAPVENPPPTPPSAPPETSPQPPASIPPRNSPPPQRLTSPPPPSDPLASSPPPPSDPPASSPPKPSPPASISPPPPSLVSPPVSSKTPTLPPGNPTDDGSGPNGGVNSNSNSNGGIDTGGVIAIGVVAGIVVLAIVGFVVWYIRKPRKNDSGRRGYIIPSSMGSSPKSESLMKVHSTLHQDRHGGGTFSPKEFGGLGNSRSFFTYEELFKATNAFSAQNLLGEGGFGSVYKGYLPDGREVAVKELKIGGGQGEQEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVCNNSLYYHLHVKGDDQLVLDWARRIKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDAQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDASQPMGDESLVEWGRPLLNHALHSQDFERLVDPRLERNYVESEMLKMIGIAAACVRHASAKRPQMGQVVRAFDSLAATDLSNGMRFGESQAFDSGQKSAEIRFFRMLAFGNQDYSSDFYSQGRLFLMLTETQAMLLLLNMADLLKSKKTASYPMCTRRRKLLFSTINSEDRD 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11371917 11376628 - CmoCh18G010820.1 Cmo18g01082 402855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01082 776 MobiDBLite consensus disorder prediction 1 298 - -
Cmo18g01082 776 SUPERFAMILY Protein kinase-like (PK-like) 384 674 IPR011009 -
Cmo18g01082 776 SMART serkin_6 401 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01082 776 ProSiteProfiles Protein kinase domain profile. 401 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01082 776 MobiDBLite consensus disorder prediction 10 275 - -
Cmo18g01082 776 MobiDBLite consensus disorder prediction 276 298 - -
Cmo18g01082 776 ProSitePatterns Protein kinases ATP-binding region signature. 407 429 IPR017441 GO:0005524
Cmo18g01082 776 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 134 726 - -
Cmo18g01082 776 Gene3D Transferase(Phosphotransferase) domain 1 478 694 - -
Cmo18g01082 776 CDD STKc_IRAK 407 679 - -
Cmo18g01082 776 Gene3D Phosphorylase Kinase; domain 1 376 476 - -
Cmo18g01082 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Cmo18g01082 776 PRINTS Proline rich extensin signature 54 71 - -
Cmo18g01082 776 PRINTS Proline rich extensin signature 12 33 - -
Cmo18g01082 776 PRINTS Proline rich extensin signature 33 49 - -
Cmo18g01082 776 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 134 726 - -
Cmo18g01082 776 Pfam Protein tyrosine and serine/threonine kinase 404 674 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo15g01052 Cmo18g01082 CCT
Cmo04g01626 Cmo18g01082 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00802 Cmo-Chr18:9482250 Cmo18g01082 Cmo-Chr18:11371917 1.14E-144 dispersed
Cmo18g01082 Cmo-Chr18:11371917 Cmo04g00836 Cmo-Chr4:4161753 8.18E-130 dispersed
Cmo15g00209 Cmo-Chr15:1017698 Cmo18g01082 Cmo-Chr18:11371917 0 wgd
Cmo18g01082 Cmo-Chr18:11371917 Cmo04g01626 Cmo-Chr4:8295235 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75078 PF07714 PK_Tyr_Ser-Thr 1.80E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01082 - - cmo:103489228 729.169