Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01090 ATGGGTTTTGATCTTCAACATCATTTGAGGATGATTCTAATGGGAATTAGAACAGAGCTTCCCCTGTTCTTCTTGTTTTGCTTATGGTGTTCTTCTGTAAATGGGTTGCTTACTGCAAAAGGTGTCAACTTTGAAGTGCAAGCCCTGATGGCGATCAAAGCTGCTCTGAAAGACCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCATGTAGCTGGAGCATGATTACTTGTTCTTCAGAGAAATTCGTCATTAGCTTAGGAGCTCCTAGTCAGAACTTGTCGGGTAGCCTGTCGCCGAGCATTGGAAACTTGACCAATCTTCAGTCTGTGCTTCTACAGGACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCAAGTCTTGACACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAAATCCCCATTTCTCTTTCAAATCTCAAGAGTTTGCAGTATCTGAGGTTAAACAACAACAGTCTTTCTGGGGCCATTCCTTCATCGTTAGCCAATATGACTCAGCTGGCATTGCTAGACCTGTCTTTTAACAATCTCAGTGGCCCATTGCCCAGATTGCAAGCCAAAACCTACAACCTTGTTGGGAATTCGTTCGTTTGCTCATCTGGGTCCGAGCTTAGCTGCAACGGAACAGCTCCACCGCTCTTATTTGCAGTCAATACGCCTCGAAACCCACAGCCTTTAGGGCGATCCAAGGGCCACAAATTAGCCTTAGCTTTTGGCTCAAGCCTTGGATGTGTTGTTCTGCTAACTATTGGGTTTGGCTTCTTCATTTGGTGGAGGCAACGACACAACCAGCAGATATTCTTCGATGTAAATGACCAAAGATTTGAAGAAGTGTGCCTTGGGAACCTAAGGATTTTCCAGTTCAGAGAGCTACAAGCTGCTACAAACAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGGTTTGGGAATGTATACAAAGGGTACCTTCAAGATGGTACAGTTATAGCTGTGAAGAGACTAAAAGATGGAAATGCCATGAGAGGAGACGTACAATTTCATACTGAAGTTGAGATGATCAGCCTAGCCGTGCACCGGAACCTCCTCCGTCTCTACGGGTTCTGCATGACAACCACGGAGCGACTGCTGGTTTACCCCTATATGTCGAACGGCAGTGTTGCATCCCGTCTCAAAGCGAAGCCAGCTCTGGATTGGAGTACAAGGAAAGGAATAGCGTTGGGTGCAGCTAGAGGCTTACTGTATTTGCATGAGCAGTGTGATCCTAAGATCATACACAGAGACGTCAAGGCTGCAAATATATTGCTTGATGATTACTGCGAGGCTGTGGTTGGAGATTTTGGACTGGCAAAGCTGTTGGATCACAGAGATTCACATGTGACAACTGCTGTACGAGGAACGGTTGGTCATATAGCTCCCGAGTATCTCTCGACGGGTCAATCCTCTGAGAAAACTGATGTCTTCGGATTTGGAATCCTTCTTCTTGAGCTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCAAATCAGAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCACCAAGAAAAGAAGCTGGAAATACTAGTTGACAAGGATCTAAGGAACAATTATGACCCGATCGAGCTCGAAGAAATGGTTCAAGTAGCTCTCTTATGTACGCAGTATCTTCCAACCACCAGACCTAAGATGTCTGAAGTGGTTAGAATGCTTGAAGGGGATGGACTTGCCGAAAAATGGGAAGCTTCACAGAGGGCAGAAGCAAACAGGATCAGAGTCAACGAGTTCTCCTCTTCCGAGCGATATTCTGATCTTACAGACGACTCTTCCTTGCTTGTACAAGCCATGGAGCTTTCTGGACCAAGATGA 1902 45.32 MGFDLQHHLRMILMGIRTELPLFFLFCLWCSSVNGLLTAKGVNFEVQALMAIKAALKDPHSVLNWDENAVDPCSWSMITCSSEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQDNNISGTIPMELGNIPSLDTLDLSSNGFHGEIPISLSNLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLQAKTYNLVGNSFVCSSGSELSCNGTAPPLLFAVNTPRNPQPLGRSKGHKLALAFGSSLGCVVLLTIGFGFFIWWRQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGDVQFHTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWSTRKGIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEILVDKDLRNNYDPIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRAEANRIRVNEFSSSERYSDLTDDSSLLVQAMELSGPR 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11413289 11417140 + CmoCh18G010900.1 Cmo18g01090 402863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01090 633 Gene3D Phosphorylase Kinase; domain 1 282 389 - -
Cmo18g01090 633 SUPERFAMILY L domain-like 45 206 - -
Cmo18g01090 633 SMART serkin_6 313 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01090 633 Gene3D Ribonuclease Inhibitor 42 223 IPR032675 -
Cmo18g01090 633 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 23 633 - -
Cmo18g01090 633 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 23 633 - -
Cmo18g01090 633 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Cmo18g01090 633 SUPERFAMILY Protein kinase-like (PK-like) 291 583 IPR011009 -
Cmo18g01090 633 Pfam Protein kinase domain 314 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01090 633 Pfam Leucine rich repeat 132 192 IPR001611 GO:0005515
Cmo18g01090 633 Pfam Leucine rich repeat N-terminal domain 45 81 IPR013210 -
Cmo18g01090 633 Gene3D Transferase(Phosphotransferase) domain 1 390 602 - -
Cmo18g01090 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Cmo18g01090 633 ProSiteProfiles Protein kinase domain profile. 313 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02959 Cmo-Chr4:20940568 Cmo18g01090 Cmo-Chr18:11413289 0 dispersed
Cmo05g00035 Cmo-Chr5:125060 Cmo18g01090 Cmo-Chr18:11413289 0 dispersed
Cmo04g01633 Cmo-Chr4:8339374 Cmo18g01090 Cmo-Chr18:11413289 0 transposed
Cmo04g02293 Cmo-Chr4:17046288 Cmo18g01090 Cmo-Chr18:11413289 0 transposed
Cmo15g00218 Cmo-Chr15:1057861 Cmo18g01090 Cmo-Chr18:11413289 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75079 PF00069 Pkinase 2.90E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01090 - - cmos:111449699 1250.34