Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01091 ATGGGTGACATTTTGGAGGTGGATCATTTGAGCGATCTGCCTCAGAGCATTATAGAATGCATTCTCACTAGGTTACCGATTAGAGATGCCATAAGAACAAGTATTTTGTCTAGGAGATGGAGATACAAATGGACCACTCTAACTCAACTTGTGTTTGATGATGATTGTGTTGCCATGTCCAACGATGGAATGTATGAAGACCTTATATATTTTATCACTCATGTTCTTTTTCTTCACGAAGGTCCAATTCATAAGTTCCATCTTTCTGCTACCTACTTACAGAATACTCCAGATTTAGATCAGTGGATGCTTTTCCTTTCAAGGAAGGGCGTCAGGGAATTGATTATTGAGTTGGGAGACGGCGAGTGGTTTCGGGTGCATTCTTGTCTTTTTAACTGTACCAAATTGACCCTATTGGAGCTGTATCGTTGTGAATTGGATCCTCCTCCTACTTTTAGGGGATTCTTATGTTTGAAGAGCCTAAAACTTCATCAAGTTCTAATTGCACCTGAAGACATCGAAAGTCTTATTTCTAATTGTCCGCTCTTGGAGAGTCTGGCGCTGTCGTATTTTGATAGTCTAGTGCTTAATATCTTTGCTCCAAATCTCAAGTACCTCTATCTTGAAGGCGAGTTCAGAGACATTTATCTTCAAAACACACCACTCTTGGTTGCAATTTCGGTTGCGTTATATATGAATGATGATACCGAGCCCTTTGGCGATATTTCTGATTGCAATTTTGAGAAATTTCTTGGTGGGGTGCCTTATCTTGAGAAACTTACAGGGCATATTTATTTCACCAAGTATCTGAGTATAGGTAATAGCGCAAGAGCTCTACCAGTGTCGTATATCTATTTAAGGAGTATTGAACTGCACCAAGTCAGCTTTGAAGATATGAATGAAATACTCGTTGTGCTTCGCTTGATTACCAGCTCTCCAAATTTAGAGGAGCTTCAAATTTCGGTAATTGATTTTGTTCCTCGTATTTCTCTGTGCGGTTCTATTCTTGAATCGGGCTCCTCAAACTCTGTGGCTGCTTCAGAAGCACCTGACTTGGACTTTTGGGAGAATGAATGTCCTTGGAACTGTACATTTGGTAACCTTAAAGTTGTGAAAATGACAGATATGTCTGGTGTACCACATGAGATGGAATTTATTAAATATTTGCTTAGAAATTCTCTGGTTCTTGAAACAATGAGTATCAGACCATGTGTCTATGTTACGGACCGACGATTGAATATGTTGATTGAATTGTTGAAATTTAGGAGAGCTTCATCTGAAGCAGAAATTTTATTCATTTAA 1302 38.94 MGDILEVDHLSDLPQSIIECILTRLPIRDAIRTSILSRRWRYKWTTLTQLVFDDDCVAMSNDGMYEDLIYFITHVLFLHEGPIHKFHLSATYLQNTPDLDQWMLFLSRKGVRELIIELGDGEWFRVHSCLFNCTKLTLLELYRCELDPPPTFRGFLCLKSLKLHQVLIAPEDIESLISNCPLLESLALSYFDSLVLNIFAPNLKYLYLEGEFRDIYLQNTPLLVAISVALYMNDDTEPFGDISDCNFEKFLGGVPYLEKLTGHIYFTKYLSIGNSARALPVSYIYLRSIELHQVSFEDMNEILVVLRLITSSPNLEELQISVIDFVPRISLCGSILESGSSNSVAASEAPDLDFWENECPWNCTFGNLKVVKMTDMSGVPHEMEFIKYLLRNSLVLETMSIRPCVYVTDRRLNMLIELLKFRRASSEAEILFI 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11417508 11419004 - CmoCh18G010910.1 Cmo18g01091 402864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01091 433 SUPERFAMILY RNI-like 121 323 - -
Cmo18g01091 433 Pfam F-box domain 10 42 IPR001810 GO:0005515
Cmo18g01091 433 ProSiteProfiles F-box domain profile. 7 68 IPR001810 GO:0005515
Cmo18g01091 433 SUPERFAMILY F-box domain 7 74 IPR036047 GO:0005515
Cmo18g01091 433 Gene3D Ribonuclease Inhibitor 18 425 IPR032675 -
Cmo18g01091 433 SMART 9598neu4hmm 362 433 IPR006566 -
Cmo18g01091 433 PANTHER F-BOX PROTEIN-LIKE 7 407 - -
Cmo18g01091 433 Pfam FBD 362 401 IPR006566 -
Cmo18g01091 433 PANTHER - 7 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01091 - - - csv:101208370 780.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01148 Cmo-Chr3:9123666 Cmo18g01091 Cmo-Chr18:11417508 1.36E-07 dispersed
Cmo07g00888 Cmo-Chr7:4197996 Cmo18g01091 Cmo-Chr18:11417508 8.88E-08 dispersed
Cmo14g01310 Cmo-Chr14:10954322 Cmo18g01091 Cmo-Chr18:11417508 1.04E-07 dispersed
Cmo14g01313 Cmo-Chr14:10977648 Cmo18g01091 Cmo-Chr18:11417508 2.89E-09 dispersed
Cmo02g00144 Cmo-Chr2:714012 Cmo18g01091 Cmo-Chr18:11417508 9.37E-09 transposed
Cmo05g00757 Cmo-Chr5:4055485 Cmo18g01091 Cmo-Chr18:11417508 1.25E-11 transposed
Cmo18g01091 Cmo-Chr18:11417508 Cmo04g01632 Cmo-Chr4:8339196 1.40E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1028 . . . . . . . . . Cmo18g01091 . . . Car18g00992 Sed06g1833 . . Bhi07g01411 Tan04g0933 Cmetu10g0062 Lac13g0428 Hepe10g1843 . . . . . . . . . . . . . . . . Cme10g00320 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007651 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01091 Cmo_Chr18 FPKM 72.88781 75.116081 26.024664 23.467535 1.383462 1.230766 0.9798 67.066727 67.062469 57.897491