Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01097 ATGGCGTCTTCCCCCACTCCCATCTCTCCACTATCTTTTCCCAATCGGAGATCAAAACCAAAACCAAACAAACCGCCTCCTTCATTGCCTCCGCCGTGGAAACCCAGCCCCAAATCTATGCCCAAGGAGATTTACTTTAACCGCGATGGCTCTGCCTTGAAAAAGCTTCAGGTCGGTGTTGATTTGGTGGCGGAGTTGGTCGGTGTTACGTTAGGGCCGAAGGGGAGGAATGTGGTGCTTCAAAGAAAATATGGTCCGCCTAAGATCGTCAACGACGGGGAAACTGTCCTCAAAGAGATTGAATTGGAAGACCGTTTAGAGAACGTTGGGGTGAAATTGGTAAGACAAGCTGGTGCAAAGACAAATGACCTTGCTGGTGATGGTTCCACTACATCTGTTGTTCTTGCCCAGGGATTAATTGCTGAGGGTATGAAGGTTATTTCATCTGGCATGAGTCCTGTTCAAATTGCACGTGGGATTGAGAAGACTGCAAATGCACTAGTTTCTGAGCTGAAATTGATGTCAAGAGAGGTTGAAGATCATGAGATAGCACATGTTGCTGCAGTTAGTGCAGGGAATGATTATGCTGTGGGAAATATGATTTCAGATGCCTTACGTCAAGTTGGAAGGAAAGGAGTCGTCCAAATTGAAAAGGGGAAGAGTATCGATAACAGTCTGCAAATTGTTGAAGGGATGCAATTTGATTCTGGATATTTGTCTCCGTACTTTGTTACTGATAGACAGAAGATGATAGTAGAATTTCATGATTGCAAGTTACTGTTGGTCGACAAAAAAATCTCAGATCCAAAGGAGATGTTTAAAATATTGGACAGTGCAGTGAAGGAGAAGTATCCAATTGTGATCTTGGCAGAGGGCATTGAGCAGGCAGCTTTGGCTCCAGTAATTAGGAATAAACTTAGAGGTGTGCTGAAGGCAGCTGCTGTCAAGGCTCCTGCCTTCGGCGAACGCAAGAGTCACTACTTAGATGACATAGCGACCCTAACTGGAGCAACTGTGATCAGAGAAGATAGTGGACTGACTTTAGAAAAGACCGGCAAAGAGGTATTGGGCTCTGCTACTAAGGTTGTTATAACGAAGGATTCCACACTAATAGTTACAGATGGGACTACTCGGGAAGCAGTTCAAAAAAGGGTTTTACAAATTCAAAAGCTTTTGGAGAATACTGAGGAAAAATTTCCAAAGAAGATTTTGAATGAGAGAATTGCTAGACTATCTGGGCGAATTGCTATACTTCAGGTAGGAGCACAAACTCAAGTTGAATTGAAGGATAAACAGTTAAGGATTGAGGATGCCTTGAATGCGTCAAAGGCTGCAATTGAAGAAGGTGTTGTCGTTGGTGGTGGTTGTTGTCTTTTAAGGCTGTCAACCAAGGTGGATGCTATAAAGAATGTCCTGGAAAATGAAGAGCAGATGATTGGTGCCGAAATTTTCAAAAGGGCTTTGAGTTATCCTACAAGACTAATTGCGAGAAACGCCGGAGTTAATGGAAGTGTGGTTATAGATAAGGTTCTAATTAACAATGATATGAATTTTGGATATAATGCCGCCACAGACCATTACGAGGATTTAATGAAAGCTGGAATCATGGATCCATCGAAGGTCGTCAGATGTTGCTTGGAGCATGCCGCTTCTGTTGCGAAAACTTTCCTGACATCCGATGCTGTTGTAGTTGATATCAAGGAACCAGAATCCTTTCCAAGAAGAACGCCGTTGCCCATCTCAGGCATCAAACGAATGGGTCTTTAG 1767 43.46 MASSPTPISPLSFPNRRSKPKPNKPPPSLPPPWKPSPKSMPKEIYFNRDGSALKKLQVGVDLVAELVGVTLGPKGRNVVLQRKYGPPKIVNDGETVLKEIELEDRLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVISSGMSPVQIARGIEKTANALVSELKLMSREVEDHEIAHVAAVSAGNDYAVGNMISDALRQVGRKGVVQIEKGKSIDNSLQIVEGMQFDSGYLSPYFVTDRQKMIVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEGIEQAALAPVIRNKLRGVLKAAAVKAPAFGERKSHYLDDIATLTGATVIREDSGLTLEKTGKEVLGSATKVVITKDSTLIVTDGTTREAVQKRVLQIQKLLENTEEKFPKKILNERIARLSGRIAILQVGAQTQVELKDKQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKNVLENEEQMIGAEIFKRALSYPTRLIARNAGVNGSVVIDKVLINNDMNFGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPESFPRRTPLPISGIKRMGL 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11442586 11449083 + CmoCh18G010970.1 Cmo18g01097 402870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01097 588 TIGRFAM GroEL: chaperonin GroL 42 568 IPR001844 GO:0042026|GO:0140662
Cmo18g01097 588 CDD GroEL 42 565 IPR001844 GO:0042026|GO:0140662
Cmo18g01097 588 Pfam TCP-1/cpn60 chaperonin family 63 566 IPR002423 GO:0005524
Cmo18g01097 588 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 2 570 - -
Cmo18g01097 588 Gene3D - 51 564 IPR027413 -
Cmo18g01097 588 Coils Coil 458 478 - -
Cmo18g01097 588 Coils Coil 378 398 - -
Cmo18g01097 588 SUPERFAMILY GroEL-intermediate domain like 181 243 IPR027410 -
Cmo18g01097 588 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 2 570 - -
Cmo18g01097 588 ProSitePatterns Chaperonins cpn60 signature. 444 455 IPR018370 GO:0005524|GO:0006457
Cmo18g01097 588 MobiDBLite consensus disorder prediction 1 41 - -
Cmo18g01097 588 MobiDBLite consensus disorder prediction 19 38 - -
Cmo18g01097 588 SUPERFAMILY GroEL equatorial domain-like 49 563 IPR027413 -
Cmo18g01097 588 Coils Coil 428 448 - -
Cmo18g01097 588 PRINTS 60kDa chaperonin signature 67 93 IPR001844 GO:0042026|GO:0140662
Cmo18g01097 588 PRINTS 60kDa chaperonin signature 123 150 IPR001844 GO:0042026|GO:0140662
Cmo18g01097 588 PRINTS 60kDa chaperonin signature 307 330 IPR001844 GO:0042026|GO:0140662
Cmo18g01097 588 PRINTS 60kDa chaperonin signature 389 414 IPR001844 GO:0042026|GO:0140662
Cmo18g01097 588 PRINTS 60kDa chaperonin signature 437 458 IPR001844 GO:0042026|GO:0140662
Cmo18g01097 588 Gene3D - 177 449 IPR027410 -
Cmo18g01097 588 Gene3D GroEL 231 412 IPR027409 -
Cmo18g01097 588 SUPERFAMILY GroEL apical domain-like 224 415 IPR027409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01097 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - csv:101209342 962.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00839 Cmo-Chr10:3944731 Cmo18g01097 Cmo-Chr18:11442586 0 dispersed
Cmo13g00454 Cmo-Chr13:5603585 Cmo18g01097 Cmo-Chr18:11442586 7.57E-150 dispersed
Cmo17g00696 Cmo-Chr17:7071850 Cmo18g01097 Cmo-Chr18:11442586 5.86E-132 dispersed
Cmo18g01097 Cmo-Chr18:11442586 Cmo20g00537 Cmo-Chr20:2610647 4.99E-142 dispersed
Cmo18g01097 Cmo-Chr18:11442586 Cmo17g00129 Cmo-Chr17:743294 2.85E-144 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01097 Cmo_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0