Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01098 ATGGTTTTGGTGCGCAGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGTGGTTTAATGATCAAGAGCGCTCATTTTCATGCAAGTCTTGTTGAGTGGCTTATACATCTAATGGATATTGGCGGCGGAGATCAATTTAGAGTAGAAAGTAGCCCACAGGATTGTATGTCTTTGGATATGGCTGGTTGTTCTTCTTCCACTGCTCATGTGGTTGAGTCATTTAGCTCTACCATTTGGGAACAAGCAGCTAATTCTCAAAACTTGGGACTCCTCGAAGAACATAACATATGTAGAACTTCAAACGACATAGCAATTAACAAGACCATTGGCTGTCCTATTCCTTTGAGCAGTGACAATGACAAAACACTTGATATCAGCTGGAGCTTGTCCAATAATATGTTGAAAGGGGGAGGTTACCTTAATGCAATCCCGCCGAGCTTATCTCAACTTCCAGCTGATTCTTCGTTTATTGAGCGTGCAGCCAGGTTCTCCTGGTTTAGTGGTGGAAATTTTGGTGATGTTACTGGACATTTTGATATTCCTGAGCCTATGGACGTTTTTTCTAGAGGTATGGGAGTAGTAATGCCTGAGAGACAGGAGGATGTTCCTAGACGAAACGGGTTAGGTTCGGTATCTCGAGCCGGAGGACGATTCCAGGGAAATACGGTTAACAGTGAAGCTTCCAAGCCTGTTTCTTTGCATAATGCAGCACATGGAAGCCTTTTGAAATTGGACGATTGTTGTAAACATGCTGTTGATGGTTCTGCTAATGAATCTGAGCTTAGCGGTGGCGATGGTTCGGGTGAGCCATGCACGTTAGAGGTTGCAGGTAAGGAAGTTTCTGCTAAGGGCATCGCTGCAAAGAAAAGGAAAAGGAGTGGACAGAAGGCTGAACTTGATCAAGTCAATGGACCTCTGCAACAAACTAGTGTTGCAGCTCAGGATAATACTGAATCTCAGCTAAAGGGAGATCAAAACCCGAGCTCGACCGCAAACAAGGGTACAGTAAAGCACGGTAAACAGGCGTCTCAACCTTTAGATCCACCAAAGGAAGAGTATATTCATGTTCGAGCTCGAAGAGGCCAGGCGACAAACAGCCATAGTCTTGCAGAAAGGGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAATTTCTTCAAGAACTAGTGCCTGGTTGCAGCAAGGTGACTGGGAAGGCAGTGATGCTCGATGAAATCATTAACTATGTTCAGTCTCTGCAACGACAAGTCGAGGTACGAAAATCCGTTTATATGCTTCACAGCTTTAGTATATTCTTGAGATAG 1302 45.01 MVLVRSCSSSSSSSSSRGLMIKSAHFHASLVEWLIHLMDIGGGDQFRVESSPQDCMSLDMAGCSSSTAHVVESFSSTIWEQAANSQNLGLLEEHNICRTSNDIAINKTIGCPIPLSSDNDKTLDISWSLSNNMLKGGGYLNAIPPSLSQLPADSSFIERAARFSWFSGGNFGDVTGHFDIPEPMDVFSRGMGVVMPERQEDVPRRNGLGSVSRAGGRFQGNTVNSEASKPVSLHNAAHGSLLKLDDCCKHAVDGSANESELSGGDGSGEPCTLEVAGKEVSAKGIAAKKRKRSGQKAELDQVNGPLQQTSVAAQDNTESQLKGDQNPSSTANKGTVKHGKQASQPLDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEVRKSVYMLHSFSIFLR 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11457766 11459974 + CmoCh18G010980.1 Cmo18g01098 402871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01098 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 362 412 IPR011598 GO:0046983
Cmo18g01098 433 Pfam Helix-loop-helix DNA-binding domain 365 413 IPR011598 GO:0046983
Cmo18g01098 433 MobiDBLite consensus disorder prediction 300 339 - -
Cmo18g01098 433 PANTHER TRANSCRIPTION FACTOR BHLH49 39 417 - -
Cmo18g01098 433 MobiDBLite consensus disorder prediction 283 297 - -
Cmo18g01098 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 360 427 IPR036638 GO:0046983
Cmo18g01098 433 SMART finulus 368 418 IPR011598 GO:0046983
Cmo18g01098 433 Gene3D - 358 422 IPR036638 GO:0046983
Cmo18g01098 433 MobiDBLite consensus disorder prediction 200 227 - -
Cmo18g01098 433 MobiDBLite consensus disorder prediction 283 349 - -
Cmo18g01098 433 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 39 417 IPR024097 GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01098 - - - bhj:120081983 513.457
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo15g00881 Cmo18g01098 CCT
Cmo04g01641 Cmo18g01098 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02285 Cmo-Chr4:17008547 Cmo18g01098 Cmo-Chr18:11457766 3.22E-72 dispersed
Cmo15g00881 Cmo-Chr15:4461494 Cmo18g01098 Cmo-Chr18:11457766 2.56E-74 dispersed
Cmo18g01098 Cmo-Chr18:11457766 Cmo14g01559 Cmo-Chr14:12449597 5.36E-39 dispersed
Cmo18g01098 Cmo-Chr18:11457766 Cmo04g01641 Cmo-Chr4:8388080 9.10E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1010 Blo01g00466 Blo16g01072 Bda01g02113 Bda11g01162 Bpe13g01361 . . . Cmo04g01641 Cmo18g01098 . Cma18g01076 Car04g01621 Car18g00999 . Cpe09g00247 Cpe01g01393 Bhi07g01428 Tan04g0941 . . . . . Cla05g02367 Cam05g2537 Cec05g2567 Cco05g2606 Clacu05g2534 Cmu05g2393 Cre05g2509 . . . Cone9ag0512 Lsi04g00328 Csa05g02541 Chy10g01083 Cme10g00327 . . . Bda11g01162 . Bpe02g02301 Bma01g00138 Bma06g00747 . . Cmo15g00881 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003071 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11548 PF00010 HLH 4.40E-06 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01098 Cmo_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0