Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01102 ATGATAGGAAATGTGTACTCTTCAAAGGGAAATCACATGGCCACCATGAAAACAAACCCAAATATGTCCATGGCTGAACTTATCTTAGCTTCCATCTCAAAAATCATAGATTCCACAGCGTGCACTGAAGAACATGGAGATTTTATTGAGATTGGAAGCTACTTTTATCGAGCATCTATGGCCATTATAGAGCTACAAGCAATAGACCCAATAAGATTTGATGAAATCCTCCAATCTCTAAACAAAAGCATCAATTTTGCAAAGGATCTTCTGGAGAAGTTCTTGACAGGCATTCAACAAGCCTCAGATTCTGAACCCATTAGCATCATAGATCCACTAAAAGAGCTGATAAAACAAATGGGTGAATGCTTGAACAAGGTAGCAACCTATAGTTTTGAAGATCAGAATTATGTGAAAATGGCTATTCTATCACTTTCAGATGAGATGCAGAATATATCCTCTAAAATTGTCACAGCTCAAGCCATAATTAACGAGCAAGAGATGCGAGCTTCTTCGTCGGAGGAACAACCAGAAGTTATTGAAAATGATCTGTACCCCATTGACATGGACTGGGACACAAACAATACACAATCCCCAGTTGAGTCAGAGTTGAGTGAAGCTGTTAAGTATAGAAATGTCACAGAAGTTTCGACAAAACGACCCTCGACAGCTAACTACATAGAGCCTCTTTTTGAGACCTTCATCTGTCCTTTGACGAAAGACATCATGGATGATCCGGTTAGCCTTGAAACGGGAGTGACATACGAAAGAAAAGCAATCGTCGAGTGGTTTGAAGAGTTTGAAGAATCTGAGGAAGTTTTCTGCCCAGTCACAGGGCAAAAGCTTGTGTCCAAAGCTGTTAATTCAAACAGAGCTCTGAAGTCTACAATAGACAAATGGAAGGAACGTAATGAGATAGCAACAATCAAAGTCGCCCGAGCCGCTCTGTCCCTAGCCAGTTCAGATGCAATGGTGCTCGAGGCAATCGAAGACCTGTCAAGCATCAGCAAAGGAAAGCAGTTCAACATAGAACGGATCTTCGATTTTGAGATGTTACCTTTGCTCGTCGAGTGTCTGGAGTACAGAAACAAAGATGTTAGATATGCAGTTCTTGAGTTATTGCATCAAATGGCAGAAATCAATGAAGACAACAAGAAGATAATCTGTAACCAATTGGACATGTCAAGAATGGTCAATCTCCTATCAAGTGGTCACAGGTCAATCCGGAACACATCTTTGCTTCTGTTGCATGAGCTTTCAAGAACACAGTCATTGACTGATCAAATTGGTTCAGTAACTGGGGGGATTTCGATGCTGATTGTCATGAAGGACGATAGGTCTGATGAATTTGCTTCAGAAAAGGCAGATGAAACCTTGAGAAACTTAGAGACATCTCCAACTAATATCAAGCTCATGGCAGAATATGGACTCATGGAGCCCCTAGTAAGGTATCTTACTGAAGGTAAGTGTAATGAGTGGATGAGAATAGAAATGGCAAGCTATCTTGGGGAGATTGTTATTAGACAAGATTGTATGGCATATGTAGCTGAGAAGGCCTCTCCAGCTCTTGTCGATATGGTGCACGAAGGAGATACACTTGTCCGAAATGCGGCATTTAAAGCTTTATTGCAAATTTCATCTCACAGACCTAATGGTGAAATACTTGCAAAAGCTGGAACTGTACAAGTCATGGCTGAAGAGATTTTCACTCGTACCATCTGTGATGAACTTAATGATCCAAAAACAGAAGCAGCTGAAATTCTGGCAAATATATGCGAGTCCAGTCTCGATCTCGAGACACTTCAAGTTAATGCTCATGGCTCCACTATGAGCTCAGATTATATAGTCTACAACATCATCGACTTGCTCGATATCTCGACCCCAGATGAATTTAGCAAGAGCCTCATTAGAATACTATTATGCTTGACAAAATCTCCAAAAACAATGGACACCATTGTTTTAGGGGTAAAAAGCACTGAAGCTTGTGATACCCTCATAGTGTTCCTCAATAGCCCAGATGAAGAACTTGGAATTGTGGCAATAAAACTGCTTATATCACTGTGCCCTTACATGGGCTTCACAGTAGCAGAAAGACTCTGTGAAACCAGTGATCAAGTGGAGAATCTTATCAGTAGCATTACTTGGACAGACCAAGTCACAGAGAGGCAGGCACTTTCAGCAACATTCTTAGCAAAACTACCTCACCAGAGCCTGACTCTAAACACCCTTCTTGTGAACAAGAACATTGTGTCCAAGATCATGGAAACAATCGATCAAATACCGAGCGGTGGAATGGGAATGAACAGGTATGCAAGTACTTTGCTAGAGGGTTCGGTGGGGATTCTTGTCAGATTCACATCAACACTTCATGATCCACAAATGTTGTTTATAGCAAAATTTCACAATTTTACATCAGTATTTACTAACCTGCTGGCGCAAACATCAAGTGATGAAGTTCAAAAGCTATCCGCCATTGGGTTGGAGAAACTCTCATCAGCATCCATGAGTCTATCAAAGCCCCTAGACACTAAAAGAAAAACGGTCATAAAATTTCTCCACATACCCAAGCTTCTATCGCTAGGTTCATCAAAGAAGGGTCAGTTACGAGTATGCCCAGTTCATAAAGGGGCTTGCTCTTCACAAAACACATTCTGTTTAGTCCATGCAAAGGCAATTGAAAGGCTATTGAGGTGTTTAGACAATGAGAAGGAAGAGGTGGCTGAGGCAGCTCTGTCAGCCATTTGTACGCTTGTGGATGACAAAGTGGATGTGGACAGAAGTGTGAGCCTACTAAACGAATTTGACACAATAAAGCATGTCCTGAATGTGGTGAGAATGCACGAGCAAGAATCTCTATGGCATAAATCCTTCTGGTTGATAGAGAAGTTCTTGCTCAAAGGCGGGGAAGACTCACTTTCCAATATATCACAGGACAGATCATTGCCTGCGATATTGGCGGCTGCTTCACATCAAGGGAGCAGCGAAACAAGGCAGATAGCTGAGAAGATATTGACCCATTTGAATATGGTACCAAATTTCTCTGCTCCTAACTATACTCTATGA 3063 41.46 MIGNVYSSKGNHMATMKTNPNMSMAELILASISKIIDSTACTEEHGDFIEIGSYFYRASMAIIELQAIDPIRFDEILQSLNKSINFAKDLLEKFLTGIQQASDSEPISIIDPLKELIKQMGECLNKVATYSFEDQNYVKMAILSLSDEMQNISSKIVTAQAIINEQEMRASSSEEQPEVIENDLYPIDMDWDTNNTQSPVESELSEAVKYRNVTEVSTKRPSTANYIEPLFETFICPLTKDIMDDPVSLETGVTYERKAIVEWFEEFEESEEVFCPVTGQKLVSKAVNSNRALKSTIDKWKERNEIATIKVARAALSLASSDAMVLEAIEDLSSISKGKQFNIERIFDFEMLPLLVECLEYRNKDVRYAVLELLHQMAEINEDNKKIICNQLDMSRMVNLLSSGHRSIRNTSLLLLHELSRTQSLTDQIGSVTGGISMLIVMKDDRSDEFASEKADETLRNLETSPTNIKLMAEYGLMEPLVRYLTEGKCNEWMRIEMASYLGEIVIRQDCMAYVAEKASPALVDMVHEGDTLVRNAAFKALLQISSHRPNGEILAKAGTVQVMAEEIFTRTICDELNDPKTEAAEILANICESSLDLETLQVNAHGSTMSSDYIVYNIIDLLDISTPDEFSKSLIRILLCLTKSPKTMDTIVLGVKSTEACDTLIVFLNSPDEELGIVAIKLLISLCPYMGFTVAERLCETSDQVENLISSITWTDQVTERQALSATFLAKLPHQSLTLNTLLVNKNIVSKIMETIDQIPSGGMGMNRYASTLLEGSVGILVRFTSTLHDPQMLFIAKFHNFTSVFTNLLAQTSSDEVQKLSAIGLEKLSSASMSLSKPLDTKRKTVIKFLHIPKLLSLGSSKKGQLRVCPVHKGACSSQNTFCLVHAKAIERLLRCLDNEKEEVAEAALSAICTLVDDKVDVDRSVSLLNEFDTIKHVLNVVRMHEQESLWHKSFWLIEKFLLKGGEDSLSNISQDRSLPAILAAASHQGSSETRQIAEKILTHLNMVPNFSAPNYTL 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11469594 11474997 - CmoCh18G011020.1 Cmo18g01102 402875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01102 1020 Pfam Armadillo/beta-catenin-like repeat 879 917 IPR000225 GO:0005515
Cmo18g01102 1020 SUPERFAMILY RING/U-box 220 309 - -
Cmo18g01102 1020 SMART arm_5 465 507 IPR000225 GO:0005515
Cmo18g01102 1020 SMART arm_5 339 379 IPR000225 GO:0005515
Cmo18g01102 1020 SMART arm_5 508 547 IPR000225 GO:0005515
Cmo18g01102 1020 SMART arm_5 381 421 IPR000225 GO:0005515
Cmo18g01102 1020 SMART arm_5 879 919 IPR000225 GO:0005515
Cmo18g01102 1020 Gene3D - 778 1015 IPR011989 -
Cmo18g01102 1020 Pfam U-box domain 232 305 IPR003613 GO:0004842|GO:0016567
Cmo18g01102 1020 SUPERFAMILY ARM repeat 509 1007 IPR016024 -
Cmo18g01102 1020 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 308 IPR013083 -
Cmo18g01102 1020 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 42-RELATED 20 1019 - -
Cmo18g01102 1020 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 20 1019 - -
Cmo18g01102 1020 SUPERFAMILY ARM repeat 316 647 IPR016024 -
Cmo18g01102 1020 Gene3D - 309 510 IPR011989 -
Cmo18g01102 1020 Gene3D - 511 688 IPR011989 -
Cmo18g01102 1020 ProSiteProfiles U-box domain profile. 229 307 IPR003613 GO:0004842|GO:0016567
Cmo18g01102 1020 SMART Ubox_2 233 300 IPR003613 GO:0004842|GO:0016567
Cmo18g01102 1020 Coils Coil 889 909 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01102 - - - csv:101217719 1432.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00990 Cmo-Chr5:7970495 Cmo18g01102 Cmo-Chr18:11469594 5.06E-127 dispersed
Cmo18g00882 Cmo-Chr18:10087319 Cmo18g01102 Cmo-Chr18:11469594 7.86E-27 dispersed
Cmo18g01102 Cmo-Chr18:11469594 Cmo01g00619 Cmo-Chr1:3195460 5.66E-16 dispersed
Cmo18g01102 Cmo-Chr18:11469594 Cmo04g01421 Cmo-Chr4:7230940 1.33E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01102 Cmo_Chr18 FPKM 29.394337 35.108845 34.270969 33.381153 24.057068 24.269564 23.378782 45.552502 43.729965 44.154289