Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01103 ATGCCCTCCAACATCCCCTTCAATGCCACTTATCCCTCATCAAGATCCCATTTTCGGTTGAGGACTATTGGGATTTCTCACTGCCTGAGAACATTTCGGAGAAACTGCATATTCCGACTATCAGTTCTTCGCATTTTCCATCTCCTTCAGCTGCGTTTTGAATTGCTTGAACTTGTTGTTGTGGGAATTCGGAATCCATACTACCAGAGAATGTGGAGAAACATTGTCAAAAGAGCTGCTTCAAGGAGGGATACGTTCTTCTCCAGAAAAGTTATTGAAGACTCTATCTTTGTTGAGGAAATTAGATCCTCCAGGACACTCGGAAGCTTGAAATCAAGTTGCCTGTTAGAGGGCTCTCGTGGAATCAGCTTTTTCCATTCCCGTGAAGTTGGGTTTGCGAAATCCAATTTCGCACATTCAAGCGAGCACGTAGCTTTTTATGGGGTTCTAAACCATGCCAAAGGCTACGCAACTGCTGCGGAGGCTGCGATTTCCGAGGAGGACTTATCAGGGTCGGAAGAAATTCAGGAATTGATGGAGGAACTAAGCAAACAAGATAAGGTGGGGTCTCACTTTAAGCAGCCTAAGAAAATGGTGGATGGAATGGGGGTAGGTAAGTACAATATTCTACGGAAGAGACAGATAAAGATGGAGACGGAGGCTTGGGAAGAGGCTGCCAGAGAGTATCAAGAGCTATTAACGGATATGTGTGAGCAGAAGTTGGCGCCCAATTTACCTTACATAAAGTCTTTATTCCTTGGTTGGTTTGAACCCTTGCGTGATGCAATTGCTGCAGACCAGGAGTTTTGCAAGAAGAAGAGTAGAGTGTCTCATGCTCCTTATTTTGATCTTCTGCCGGCGGATATGATGGCTGTGATTACAATGCATAAGTTAATGGGGTTGTTGATGACTAGCAGTGGAGGAAACAGTAGTGTCAGGGTAGTCCAAGCTGCTTGTCAGATAGGAGAAGCCATTGAACACGAGGTTAGAATCCACAAGTTCTTTGAGAATACGAAGAAGAAGAAGAAGAACAGTAATGAAAAAACTACTGAAGGAGACACTGAACCTGTGGTCGAAGACCAGGAGAAACTGGCCAAAGAACAAGACAAATTGAGGAAAAAAGTCACCAACCTGATGAAGAAACAGAAGTTGCGGCAAGTGAGGATGATAGTCAAGGAACACGATGATTTAAAGCCTTGGGGCCAGGATGCGCATGTGAAGGTTGGTTGTCGTTTGATTCAGCTATTGATTGAAACAGCGTATATTCAACCTCCAATGGATCAGTTAGGAGGAGGTCCTCCTGATATTCGTCCCGCATTTGTCCATACTCTTAAAACCATCACAAAAGAAGCACAAAAGACTAGCAGAAGATATGGTGTTATTGAATGCGATCCACTTGTTCGCAGAGGCCTGGAGAAAACTGCAAGACACATGGTCATACCATATATGCCTATGCTGGTGCCTCCCCTTAATTGGACAGGGTATGATAAAGGAGCACACTTATTCCTACCATCATATGTTATGCGAATACATGGGGCAAAGCAGCAACGTGAAGCAGTTAAAAGGGTTCCAAAGAAACAACTAGAGCCTGTTTTTGAGGCACTTGATACGCTTGGAAGAACCAAGTGGAGGGTGAACAAAAGAGTTCTTAGCATTATTGACAGGATATGGACCAGTGGTGGTCGTCTTGCTGATTTGGTTGACCGGGAAGATGTTCCTCTACCAGAGGAGCCAACTGTGGAAGATGAAGCAGAAATTCGAAAATGGAAGTGGAAACTCAAGGGTGCAAAAAAAGAGAATAGTGAGAGGCATTCACAGCGGTGTGACATTGAGCTTAAGCTTGCAGTGGCCAGGAAAATGAAAGAAGAGGAGGGCTTTTACTATCCTCACAACTTAGATTTTCGAGGTCGTGCATACCCAATGCATCCACATTTGAATCATCTTGGTTCTGATATGTGTCGTGGAATTCTAGAATTTGCGGAGGGACGGCCACTTGGAGAGTCAGGGTTACGCTGGTTGAAGATACATTTGGCAAATCTATACGCTGGTGGTGTGGACAAGTTATCTTACAAGGATCGAATATCATTTACTGAGAATCATTTGGATGAGATTTTTGATTCGGCAGACAGGCCTCTAGAAGGAAATCGTTGGTGGTTGGGCGCAGAGGATCCTTTTCAGTGCTTGGCAGTGTGTATTAATCTCTCAGAGGCTTTAAGAAGTCCATCGCCGGAAACAACTCTTTCCCATATGCCTGTACACCAGGATGGTTCCTGCAATGGCTTGCAACACTATGCAGCTCTCGGGAGGGACAAGTTGGGAGCAGCGGCTGTTAACCTTGTAGCAGGAGATAAGCCCGCAGATGTGTACTCAGGAATTGCTGCCAGAGTTCTTGACATAATACGAAGTGATGCAGAGAAAGATCCTGCAACTAATCCAAATGCGTTGCATGCTAGACTTTTAATCAATCAGGTGGATCGTAAACTGGTGAAACAAACAGTCATGACATCCGTGTATGGTGTCACGTATATGGGTGCACGGGATCAGATTAAGAAAAGGTTGAAAGAACGAGCATCCATTGCCGATGATTCACAATTATTTGCAGCTTCTTGCTATGCAGCTAAAACTACCTTGACTGCCTTGGGGGAAATGTTTGAAGCAGCAAGAAGTATCATGAGCTGGCTTGGTGAATGTGCAAAGGTAATAGCTTCAGAAAATCAGCCAGTTCGATGGACAACTCCTCTTGGACTGCCAGTCGTACAACCTTACCGGCAACTAGGAAGACATTTTATCAAGACTTCCTTGCAAATGTTGACTCTACAACGAGAAACTGACAAGGTCATGGCTAAGCGTCAGAAAACAGCTTTTCCTCCAAATTTTGTACACTCCCTTGATGGTTCTCATATGATGATGACTGCTGTCGCCTGCAGAAGGGCAGGCCTTAACTTTGCAGGTGTCCATGATTCATATTGGACCCATGCATGCGATGTTGACGTAATGAACAGGCTACTAAGGGAGAAATTTGTTGAGCTATACGAGGCTCCTATTCTGGAGAATTTACTGGAAAATTTCCAAAAGTCCTTCCCCACTTTAAAGTTTCCGCCCTTACCCGATCGGGGAGACTTTGATCTCAAGGATGTCCTGCAATCTTCCTATTTCTTCAATTAG 3165 44.52 MPSNIPFNATYPSSRSHFRLRTIGISHCLRTFRRNCIFRLSVLRIFHLLQLRFELLELVVVGIRNPYYQRMWRNIVKRAASRRDTFFSRKVIEDSIFVEEIRSSRTLGSLKSSCLLEGSRGISFFHSREVGFAKSNFAHSSEHVAFYGVLNHAKGYATAAEAAISEEDLSGSEEIQELMEELSKQDKVGSHFKQPKKMVDGMGVGKYNILRKRQIKMETEAWEEAAREYQELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQEFCKKKSRVSHAPYFDLLPADMMAVITMHKLMGLLMTSSGGNSSVRVVQAACQIGEAIEHEVRIHKFFENTKKKKKNSNEKTTEGDTEPVVEDQEKLAKEQDKLRKKVTNLMKKQKLRQVRMIVKEHDDLKPWGQDAHVKVGCRLIQLLIETAYIQPPMDQLGGGPPDIRPAFVHTLKTITKEAQKTSRRYGVIECDPLVRRGLEKTARHMVIPYMPMLVPPLNWTGYDKGAHLFLPSYVMRIHGAKQQREAVKRVPKKQLEPVFEALDTLGRTKWRVNKRVLSIIDRIWTSGGRLADLVDREDVPLPEEPTVEDEAEIRKWKWKLKGAKKENSERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENHLDEIFDSADRPLEGNRWWLGAEDPFQCLAVCINLSEALRSPSPETTLSHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIIRSDAEKDPATNPNALHARLLINQVDRKLVKQTVMTSVYGVTYMGARDQIKKRLKERASIADDSQLFAASCYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQPVRWTTPLGLPVVQPYRQLGRHFIKTSLQMLTLQRETDKVMAKRQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDVMNRLLREKFVELYEAPILENLLENFQKSFPTLKFPPLPDRGDFDLKDVLQSSYFFN 1054
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11476070 11484321 - CmoCh18G011030.1 Cmo18g01103 402876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01103 1054 MobiDBLite consensus disorder prediction 340 365 - -
Cmo18g01103 1054 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 2. 824 838 IPR002092 GO:0003677|GO:0003899|GO:0006351
Cmo18g01103 1054 Gene3D - 192 539 IPR037159 -
Cmo18g01103 1054 PANTHER DNA-DIRECTED RNA POLYMERASE 86 1054 - -
Cmo18g01103 1054 SUPERFAMILY DNA/RNA polymerases 199 1054 IPR043502 -
Cmo18g01103 1054 Gene3D - 772 961 - -
Cmo18g01103 1054 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 86 1054 IPR002092 GO:0003677|GO:0003899|GO:0006351
Cmo18g01103 1054 Coils Coil 212 232 - -
Cmo18g01103 1054 Coils Coil 361 381 - -
Cmo18g01103 1054 Gene3D - 541 623 IPR024075 GO:0003899
Cmo18g01103 1054 Pfam DNA-dependent RNA polymerase 663 1054 IPR002092 GO:0003677|GO:0003899|GO:0006351
Cmo18g01103 1054 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 1. 751 762 IPR002092 GO:0003677|GO:0003899|GO:0006351
Cmo18g01103 1054 Gene3D - 663 741 - -
Cmo18g01103 1054 SMART RPOL_N_2 212 540 IPR029262 -
Cmo18g01103 1054 Pfam DNA-directed RNA polymerase N-terminal 213 540 IPR029262 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01103 K10908 POLRMT, RPO41; DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] - csv:101217958 1560.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01038 Cmo-Chr5:8388676 Cmo18g01103 Cmo-Chr18:11476070 0 dispersed
Cmo12g00848 Cmo-Chr12:7749867 Cmo18g01103 Cmo-Chr18:11476070 0 dispersed
Cmo18g01103 Cmo-Chr18:11476070 Cmo18g01107 Cmo-Chr18:11499355 0 proximal
Cmo15g00227 Cmo-Chr15:1103876 Cmo18g01103 Cmo-Chr18:11476070 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1006 . . . . . . . . . Cmo18g01103 . Cma18g01081 . . Sed06g1812 Cpe09g00242 . Bhi07g01439 Tan04g0951 Cmetu04g2545 Lac13g0412 Hepe10g1827 . . Cla05g02372 Cam05g2540 Cec05g2571 Cco05g2609 Clacu05g2538 Cmu05g2397 Cre05g2514 . . . . Lsi04g00334 Csa05g02536 Chy10g01079 Cme10g00332 . . . . . . . . . . . . . . Car15g00220 Cpe13g00995 . . . . . . . . . . . . . . . . . Chy09g00175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000643 2 4 3 3 2 3 3 3 3 3 3 3 4 3 4 5 3 4 5 3 3 3 3 5 4 3 3 3 4 3 100
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01103 Cmo_Chr18 FPKM 11.216622 12.131852 19.356308 19.877762 3.603205 3.712823 3.076519 7.834023 9.6074 9.508389