Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01113 ATGACTCAGTTTTCTTCTGGGTCTTCTTTGTTTCCCATGGCAGAGATGAACATGAGCTTTTCAAACGATATGGGCGATGAATATCAGAAGTTCATCAAGCGAATGAACCCACCCAGAGTCGTAATCGATAACAAATCCTGCAAGAACGCCACGGTTGTTCGGGTGGATAGTGCTAATAAACATGGCATACTTCTTGAAGTTGTTCAAGTCTTGACTGATCTTAATCTTATCATAACTAAAGCTTACATTTCTTCTGATGGGAACTGGTTCATGGATGTTTTTAATGTCACGGATCAAAATGGGAACAAGGTTATGGATGAAGGGATTTTAGATTACATACGATCATCGCTCGGTCCCGATTCGTGTTGTTCATCTTCCATGAGATCTGTAGGTGTCGAATCTTCTACAGATCATACTGTAATTGAGCTCGTTGGCTGTGATCGACCTGGACTTCTTTCTGAAGTAACTGCTGTTCTTACTCATCTTAAATGTAGTGTAGAAAGGGCTGAGGTGTGGACACATAACACTCGAGTTGCTGCAGTGATGCACGTGAGGGACGAGGAAGCGTCGGTCACTGGTTCGGCAGTGACAGACTTGGAGAGATTGTCCACAATCAAGAAATTGCTTTGCAATGTGCTTAAAGGCAGCAACAAGTGTAGGGGAGCTAAGACTGTGTTCTCTCATGAGGCTATCCATACTGAGAGAAGACTTCACCAGATGATGTTTGCGGATCGAGATTACGAGCGAGCGGATGACGAAACGTTCAATGGAAAGCAGAAGCCAAATGTGAATGTTGTCAATTTGTTTGACAAAGATTATTCAGTGGTCACCATTCAATGCAAAGATAGACCAAAACTTCTGTTTGATACAGTTTGTACATTGACTGACATGCAATATGTTGTTTTCCATGCCAATGTTGATGCTGAAGGGCCAGAGGCTTATCAGGAATATTATATTAGGCACATAGATGGATCTCCTGTGAATTCAGAAGCTGAGAGACAAAGGTTGATACAATGTCTTGGAGCTGCCATTGAAAGACGAGTATCCGAGGGATTGAAGCTTGAGCTATGCACTACTGATAGAGTTGGGCTACTCTCTGATGTCACACGCATCTTCAGAGAGAATAGCTTGAGTGTGAGTCGAGCCGAAGTGAGAACGGAAGGAGGCAATGCAATCAATACATTTTACGTGCGCGATGCGTCGGGTTATCCCATCGATTCAAAGACGATAGATTCGATAAGGCAAGTGATTGGTCAATCCATATTGAAGGTGAAAGGCAGCCCTGATGAAGGGAAATCTGATTCACAAGACTCTCCAAGTAGGTTCCTGTTTGGTGGTCTGTTTAAGTCAAGATCTTTAGTGAATTTTGGATTGGTTAGATCATATTCTTGA 1392 42.74 MTQFSSGSSLFPMAEMNMSFSNDMGDEYQKFIKRMNPPRVVIDNKSCKNATVVRVDSANKHGILLEVVQVLTDLNLIITKAYISSDGNWFMDVFNVTDQNGNKVMDEGILDYIRSSLGPDSCCSSSMRSVGVESSTDHTVIELVGCDRPGLLSEVTAVLTHLKCSVERAEVWTHNTRVAAVMHVRDEEASVTGSAVTDLERLSTIKKLLCNVLKGSNKCRGAKTVFSHEAIHTERRLHQMMFADRDYERADDETFNGKQKPNVNVVNLFDKDYSVVTIQCKDRPKLLFDTVCTLTDMQYVVFHANVDAEGPEAYQEYYIRHIDGSPVNSEAERQRLIQCLGAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLSVSRAEVRTEGGNAINTFYVRDASGYPIDSKTIDSIRQVIGQSILKVKGSPDEGKSDSQDSPSRFLFGGLFKSRSLVNFGLVRSYS 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11530764 11533621 + CmoCh18G011130.1 Cmo18g01113 402886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01113 463 CDD ACT_ACR_1 50 119 - -
Cmo18g01113 463 SUPERFAMILY ACT-like 47 115 IPR045865 -
Cmo18g01113 463 SUPERFAMILY ACT-like 135 204 IPR045865 -
Cmo18g01113 463 ProSiteProfiles ACT domain profile. 140 227 IPR002912 -
Cmo18g01113 463 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-LIKE ISOFORM X1 19 461 - -
Cmo18g01113 463 CDD ACT_ACR_3 273 347 - -
Cmo18g01113 463 Gene3D - 134 213 - -
Cmo18g01113 463 ProSiteProfiles ACT domain profile. 353 429 IPR002912 -
Cmo18g01113 463 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 19 461 IPR040217 -
Cmo18g01113 463 SUPERFAMILY ACT-like 349 416 IPR045865 -
Cmo18g01113 463 Pfam ACT domain 147 192 IPR002912 -
Cmo18g01113 463 Pfam ACT domain 51 102 IPR002912 -
Cmo18g01113 463 ProSiteProfiles ACT domain profile. 52 132 IPR002912 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01113 - - - jcu:105630587 740.339
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01798 Cmo18g01113 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01552 Cmo-Chr2:8992076 Cmo18g01113 Cmo-Chr18:11530764 9.93E-159 dispersed
Cmo06g00768 Cmo-Chr6:3991126 Cmo18g01113 Cmo-Chr18:11530764 1.30E-152 dispersed
Cmo07g00643 Cmo-Chr7:2905089 Cmo18g01113 Cmo-Chr18:11530764 7.24E-126 dispersed
Cmo12g00090 Cmo-Chr12:493248 Cmo18g01113 Cmo-Chr18:11530764 0 dispersed
Cmo14g01488 Cmo-Chr14:11978264 Cmo18g01113 Cmo-Chr18:11530764 2.55E-168 dispersed
Cmo15g00070 Cmo-Chr15:380213 Cmo18g01113 Cmo-Chr18:11530764 7.92E-144 dispersed
Cmo15g01235 Cmo-Chr15:8504492 Cmo18g01113 Cmo-Chr18:11530764 3.67E-152 dispersed
Cmo16g01078 Cmo-Chr16:7623330 Cmo18g01113 Cmo-Chr18:11530764 5.37E-154 dispersed
Cmo17g01371 Cmo-Chr17:10648913 Cmo18g01113 Cmo-Chr18:11530764 3.25E-171 dispersed
Cmo18g01113 Cmo-Chr18:11530764 Cmo04g03102 Cmo-Chr4:21572218 4.70E-172 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g2 Blo01g00462 . . . . Bpe10g00911 Bma14g01718 . Cmo04g01798 Cmo18g01113 . Cma18g01089 . Car18g01010 . Cpe09g00233 Cpe01g01517 . . . . . . . . . . . . . . Cone13ag0891 Cone19ag0890 Cone6ag0514 Cone9ag0526 . Csa05g02523 . . Blo06g00939 Blo11g00801 . . . . . . . . . Cma04g01711 . Car04g01745 . . Cpe07g00095 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002935 2 4 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 2 2 1 1 2 3 4 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01113 Cmo_Chr18 FPKM 11.129956 12.860861 19.384468 24.944935 7.257931 6.203375 9.860194 3.070751 2.822469 3.401545