Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01113 ATGACTCAGTTTTCTTCTGGGTCTTCTTTGTTTCCCATGGCAGAGATGAACATGAGCTTTTCAAACGATATGGGCGATGAATATCAGAAGTTCATCAAGCGAATGAACCCACCCAGAGTCGTAATCGATAACAAATCCTGCAAGAACGCCACGGTTGTTCGGGTGGATAGTGCTAATAAACATGGCATACTTCTTGAAGTTGTTCAAGTCTTGACTGATCTTAATCTTATCATAACTAAAGCTTACATTTCTTCTGATGGGAACTGGTTCATGGATGTTTTTAATGTCACGGATCAAAATGGGAACAAGGTTATGGATGAAGGGATTTTAGATTACATACGATCATCGCTCGGTCCCGATTCGTGTTGTTCATCTTCCATGAGATCTGTAGGTGTCGAATCTTCTACAGATCATACTGTAATTGAGCTCGTTGGCTGTGATCGACCTGGACTTCTTTCTGAAGTAACTGCTGTTCTTACTCATCTTAAATGTAGTGTAGAAAGGGCTGAGGTGTGGACACATAACACTCGAGTTGCTGCAGTGATGCACGTGAGGGACGAGGAAGCGTCGGTCACTGGTTCGGCAGTGACAGACTTGGAGAGATTGTCCACAATCAAGAAATTGCTTTGCAATGTGCTTAAAGGCAGCAACAAGTGTAGGGGAGCTAAGACTGTGTTCTCTCATGAGGCTATCCATACTGAGAGAAGACTTCACCAGATGATGTTTGCGGATCGAGATTACGAGCGAGCGGATGACGAAACGTTCAATGGAAAGCAGAAGCCAAATGTGAATGTTGTCAATTTGTTTGACAAAGATTATTCAGTGGTCACCATTCAATGCAAAGATAGACCAAAACTTCTGTTTGATACAGTTTGTACATTGACTGACATGCAATATGTTGTTTTCCATGCCAATGTTGATGCTGAAGGGCCAGAGGCTTATCAGGAATATTATATTAGGCACATAGATGGATCTCCTGTGAATTCAGAAGCTGAGAGACAAAGGTTGATACAATGTCTTGGAGCTGCCATTGAAAGACGAGTATCCGAGGGATTGAAGCTTGAGCTATGCACTACTGATAGAGTTGGGCTACTCTCTGATGTCACACGCATCTTCAGAGAGAATAGCTTGAGTGTGAGTCGAGCCGAAGTGAGAACGGAAGGAGGCAATGCAATCAATACATTTTACGTGCGCGATGCGTCGGGTTATCCCATCGATTCAAAGACGATAGATTCGATAAGGCAAGTGATTGGTCAATCCATATTGAAGGTGAAAGGCAGCCCTGATGAAGGGAAATCTGATTCACAAGACTCTCCAAGTAGGTTCCTGTTTGGTGGTCTGTTTAAGTCAAGATCTTTAGTGAATTTTGGATTGGTTAGATCATATTCTTGA 1392 42.74 MTQFSSGSSLFPMAEMNMSFSNDMGDEYQKFIKRMNPPRVVIDNKSCKNATVVRVDSANKHGILLEVVQVLTDLNLIITKAYISSDGNWFMDVFNVTDQNGNKVMDEGILDYIRSSLGPDSCCSSSMRSVGVESSTDHTVIELVGCDRPGLLSEVTAVLTHLKCSVERAEVWTHNTRVAAVMHVRDEEASVTGSAVTDLERLSTIKKLLCNVLKGSNKCRGAKTVFSHEAIHTERRLHQMMFADRDYERADDETFNGKQKPNVNVVNLFDKDYSVVTIQCKDRPKLLFDTVCTLTDMQYVVFHANVDAEGPEAYQEYYIRHIDGSPVNSEAERQRLIQCLGAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLSVSRAEVRTEGGNAINTFYVRDASGYPIDSKTIDSIRQVIGQSILKVKGSPDEGKSDSQDSPSRFLFGGLFKSRSLVNFGLVRSYS 463
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 11530764 11533621 + CmoCh18G011130.1 Cmo18g01113 402886
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01113 463 CDD ACT_ACR_1 50 119 - -
Cmo18g01113 463 SUPERFAMILY ACT-like 47 115 IPR045865 -
Cmo18g01113 463 SUPERFAMILY ACT-like 135 204 IPR045865 -
Cmo18g01113 463 ProSiteProfiles ACT domain profile. 140 227 IPR002912 -
Cmo18g01113 463 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-LIKE ISOFORM X1 19 461 - -
Cmo18g01113 463 CDD ACT_ACR_3 273 347 - -
Cmo18g01113 463 Gene3D - 134 213 - -
Cmo18g01113 463 ProSiteProfiles ACT domain profile. 353 429 IPR002912 -
Cmo18g01113 463 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 19 461 IPR040217 -
Cmo18g01113 463 SUPERFAMILY ACT-like 349 416 IPR045865 -
Cmo18g01113 463 Pfam ACT domain 147 192 IPR002912 -
Cmo18g01113 463 Pfam ACT domain 51 102 IPR002912 -
Cmo18g01113 463 ProSiteProfiles ACT domain profile. 52 132 IPR002912 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo04g01798 Cmo18g01113 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01552 Cmo-Chr2:8992076 Cmo18g01113 Cmo-Chr18:11530764 9.93E-159 dispersed
Cmo06g00768 Cmo-Chr6:3991126 Cmo18g01113 Cmo-Chr18:11530764 1.30E-152 dispersed
Cmo07g00643 Cmo-Chr7:2905089 Cmo18g01113 Cmo-Chr18:11530764 7.24E-126 dispersed
Cmo12g00090 Cmo-Chr12:493248 Cmo18g01113 Cmo-Chr18:11530764 0 dispersed
Cmo14g01488 Cmo-Chr14:11978264 Cmo18g01113 Cmo-Chr18:11530764 2.55E-168 dispersed
Cmo15g00070 Cmo-Chr15:380213 Cmo18g01113 Cmo-Chr18:11530764 7.92E-144 dispersed
Cmo15g01235 Cmo-Chr15:8504492 Cmo18g01113 Cmo-Chr18:11530764 3.67E-152 dispersed
Cmo16g01078 Cmo-Chr16:7623330 Cmo18g01113 Cmo-Chr18:11530764 5.37E-154 dispersed
Cmo17g01371 Cmo-Chr17:10648913 Cmo18g01113 Cmo-Chr18:11530764 3.25E-171 dispersed
Cmo18g01113 Cmo-Chr18:11530764 Cmo04g03102 Cmo-Chr4:21572218 4.70E-172 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01113 - - jcu:105630587 740.339