Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01120 ATGGAGAGGAGAGACAAGAACGCGATGCTGCGATTGAAATCAGTGGTTCGAATAGGGCTTTGGCTCATTAGAATCTTTCGCAAAGACAGACGGATCGATCATGAAGGGCATCAGGCAGCAGCCAAGGCCAAGGGCAGCGCCAAGGCCAATGGCAATGGCAATGCCAAGGGCAGCGCCAAGGCCAATGCCAAGGCCAAGTACATTTATACAAGCATAGAAAGGGTTTGTCTGGTGGAGGTGATGGGTCTGCAAAAGTGCAATGCAGGTACGATGCTGAGTATGGTTGGAATTCCATGCAGACGTTTGTTGGATACAGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCCTTTTTGAGCACAAGACCTCCTTTACAAGGCCAATGTATTGATCATCCTCTCAGTTTTCAGTCTCAGGTTGGCTTCTCCAATGATATCCGAAAGGGGGCATCGACATCGTCGTCGTCGTCGTCGTCTTCGATGGCTAATGAGTCCCCCTCTGCAAATTTTGTTGTGAAACCCCCTGAGAAGAAACACAGGCTGCCATCTGCATACAATCGTTTCATGAAAGAGGAGATTCAACGAATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCAGCAGCCAAGAACTGGGCTCGATACATTCCAAATTCAGCTGATGGGTCGGCTTCTGGGACTCACGACAATGAATGA 708 48.59 MERRDKNAMLRLKSVVRIGLWLIRIFRKDRRIDHEGHQAAAKAKGSAKANGNGNAKGSAKANAKAKYIYTSIERVCLVEVMGLQKCNAGTMLSMVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSNDIRKGASTSSSSSSSSMANESPSANFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSADGSASGTHDNE 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11567244 11572287 - CmoCh18G011200.1 Cmo18g01120 402893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01120 235 MobiDBLite consensus disorder prediction 147 167 - -
Cmo18g01120 235 CDD HMGB-UBF_HMG-box 180 216 - -
Cmo18g01120 235 SUPERFAMILY HMG-box 167 217 IPR036910 -
Cmo18g01120 235 MobiDBLite consensus disorder prediction 147 177 - -
Cmo18g01120 235 MobiDBLite consensus disorder prediction 36 58 - -
Cmo18g01120 235 Gene3D High mobility group box domain 165 221 IPR036910 -
Cmo18g01120 235 PANTHER PROTEIN CRABS CLAW 73 233 - -
Cmo18g01120 235 PANTHER PROTEIN YABBY 6-RELATED 73 233 IPR006780 GO:0007275
Cmo18g01120 235 Pfam YABBY protein 84 219 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01120 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101219863 248.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01795 Cmo18g01120 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01120 Cmo-Chr18:11567244 Cmo12g01231 Cmo-Chr12:10977446 1.15E-33 dispersed
Cmo18g01120 Cmo-Chr18:11567244 Cmo04g01795 Cmo-Chr4:9028899 3.01E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g12 . Blo16g01078 . . . . . . Cmo04g01795 Cmo18g01120 . Cma18g01098 . Car18g01013 Sed07g2037 Cpe09g00228 Cpe01g01514 Bhi07g01472 Tan04g0975 Cmetu10g1095 . . . . . . . . . . . Cone13ag0895 Cone19ag0892 . . Lsi04g00355 Csa05g02521 . Cme10g00349 . . . . . . . . . . . Cma04g01709 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g01795 CST 17 175 C2C2-YABBY Transcription Factor Family AT1G69180 58.5 2.3e-42 169.5
Cmo18g01120 CST 85 233 C2C2-YABBY Transcription Factor Family AT1G69180 57.7 1.5e-38 156.8
Cmo02g01597 . 75 237 C2C2-YABBY Transcription Factor Family AT2G45190 60.0 7.2e-43 171.0
Cmo15g01209 CCT 81 236 C2C2-YABBY Transcription Factor Family AT2G45190 56.2 1.8e-41 166.4
Cmo02g01337 . 1 166 C2C2-YABBY Transcription Factor Family AT1G08465 66.5 1.3e-53 206.8
Cmo15g01209 CCT 37 224 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 8.0e-43 171.0
Cmo02g01597 . 31 223 C2C2-YABBY Transcription Factor Family AT1G08465 52.6 1.4e-42 170.2
Cmo11g00535 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 54.5 5.2e-42 168.3
Cmo05g01308 . 5 170 C2C2-YABBY Transcription Factor Family AT1G08465 50.9 5.4e-39 158.3
Cmo02g01597 . 42 236 C2C2-YABBY Transcription Factor Family AT4G00180 56.9 3.1e-51 199.1
Cmo15g01209 CCT 48 235 C2C2-YABBY Transcription Factor Family AT4G00180 55.1 1.7e-49 193.4
Cmo11g00535 . 7 174 C2C2-YABBY Transcription Factor Family AT2G26580 70.8 1.2e-61 233.4
Cmo05g01308 . 8 175 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 2.0e-61 232.6
Cmo12g01231 . 8 168 C2C2-YABBY Transcription Factor Family AT2G26580 69.1 1.5e-56 216.5
Cmo10g00578 . 7 168 C2C2-YABBY Transcription Factor Family AT2G26580 67.9 2.8e-55 212.2
Cmo02g01337 . 1 166 C2C2-YABBY Transcription Factor Family AT2G26580 59.0 1.7e-47 186.4
Cmo15g01209 CCT 37 196 C2C2-YABBY Transcription Factor Family AT2G26580 56.4 3.8e-44 175.3
Cmo02g01597 . 33 195 C2C2-YABBY Transcription Factor Family AT2G26580 54.2 5.5e-43 171.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11549 PF04690 YABBY 4.00E-44 CL0114 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01120 Cmo_Chr18 FPKM 10.188926 10.85302 12.096618 12.334282 8.538229 7.291339 8.138073 14.564904 12.284184 12.873575