Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01120 ATGGAGAGGAGAGACAAGAACGCGATGCTGCGATTGAAATCAGTGGTTCGAATAGGGCTTTGGCTCATTAGAATCTTTCGCAAAGACAGACGGATCGATCATGAAGGGCATCAGGCAGCAGCCAAGGCCAAGGGCAGCGCCAAGGCCAATGGCAATGGCAATGCCAAGGGCAGCGCCAAGGCCAATGCCAAGGCCAAGTACATTTATACAAGCATAGAAAGGGTTTGTCTGGTGGAGGTGATGGGTCTGCAAAAGTGCAATGCAGGTACGATGCTGAGTATGGTTGGAATTCCATGCAGACGTTTGTTGGATACAGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCCTTTTTGAGCACAAGACCTCCTTTACAAGGCCAATGTATTGATCATCCTCTCAGTTTTCAGTCTCAGGTTGGCTTCTCCAATGATATCCGAAAGGGGGCATCGACATCGTCGTCGTCGTCGTCGTCTTCGATGGCTAATGAGTCCCCCTCTGCAAATTTTGTTGTGAAACCCCCTGAGAAGAAACACAGGCTGCCATCTGCATACAATCGTTTCATGAAAGAGGAGATTCAACGAATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCAGCAGCCAAGAACTGGGCTCGATACATTCCAAATTCAGCTGATGGGTCGGCTTCTGGGACTCACGACAATGAATGA 708 48.59 MERRDKNAMLRLKSVVRIGLWLIRIFRKDRRIDHEGHQAAAKAKGSAKANGNGNAKGSAKANAKAKYIYTSIERVCLVEVMGLQKCNAGTMLSMVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSNDIRKGASTSSSSSSSSMANESPSANFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSADGSASGTHDNE 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11567244 11572287 - CmoCh18G011200.1 Cmo18g01120 402893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01120 235 MobiDBLite consensus disorder prediction 147 167 - -
Cmo18g01120 235 CDD HMGB-UBF_HMG-box 180 216 - -
Cmo18g01120 235 SUPERFAMILY HMG-box 167 217 IPR036910 -
Cmo18g01120 235 MobiDBLite consensus disorder prediction 147 177 - -
Cmo18g01120 235 MobiDBLite consensus disorder prediction 36 58 - -
Cmo18g01120 235 Gene3D High mobility group box domain 165 221 IPR036910 -
Cmo18g01120 235 PANTHER PROTEIN CRABS CLAW 73 233 - -
Cmo18g01120 235 PANTHER PROTEIN YABBY 6-RELATED 73 233 IPR006780 GO:0007275
Cmo18g01120 235 Pfam YABBY protein 84 219 IPR006780 GO:0007275
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01795 Cmo18g01120 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01120 Cmo-Chr18:11567244 Cmo12g01231 Cmo-Chr12:10977446 1.15E-33 dispersed
Cmo18g01120 Cmo-Chr18:11567244 Cmo04g01795 Cmo-Chr4:9028899 3.01E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11549 PF04690 YABBY 4.00E-44 CL0114 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01120 K25796 - csv:101219863 248.44