Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01122 ATGGATCCCCCACCCTCCTACCGCAGTCGCAGACTCACCAACAAACCTCAGCTATACTCCACAGTTGTCATCCATTCCAATTCTGATTCAGACGCCGACAACAAACCTTCCGATCGGAGACTTCAGCGCCGACGAAGACCGCCGAGCGAAGGTCAAGACCTATACGCCACAATGGTCTATAAGGACGTTGATAAGGGCCACGAGGATGAGGACGACGATGATTCGTCTCTCCCACCTCTCCTCAAACGTCTTCCAAAGGATTTCGGGGGTGGAGCCCCAATTGACTACAACGACGACGAAGATTTTGGATTTGATCACGATACTGAAGATTTTGGTACGGTGATCGTCAAAACGGGAAGGAGTCGCCCTCTTAATCGTTCTTTGTCTTCATCAGTTTCGGCGAAGCCTCGAAGTTCGGCGTTGCCTTCCGTGAACTTTCAGACGGGGAGCTCCGGGACGAGATCAGGCGGTAGAGATGGTAGCGAGGATGGCGATGTGAGCGAGGAAGATGATGGTGATGGGTATTCGACGTTCGTGGTGAAGCCTTCGGCGAGGTCGCGGAACAGAGAATCTGTTAGTGACACCATTCTTCGAAGGAGCGTTGCTAGTCGTAGTGATACCAGGGATGGAGGCGGAGGACTTGAGGGGTCCACGTTGGGCAGAGCGGTGGCGAGCATGCAAGGAATGGGAGACTTAGGGTTTGGGAAGCAGAGGAAGGGGACTGGATCGCCGAAGAGTGAGGAAGGCGGTGGTCGGATGCGCAGTAAGGTATCCACGAGTTCAATTCCTGAAAGCATCACCAGGGAAGATCCAAATACCAAGTATGAATTGCTCAACGAACTCGGAAAGGGGTCCTATGGGGCTGTTTATAAAGCAAGAGATATTAAGACCTCTGAGCTTGTTGCTATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATCGAGATGTTGCAGCAGTGCAGTCATCCAAACGTTGTCCGCTATCTTGGGAGCTACCAAGGAGAGGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACTGAAGAAGCACTAGAGGAATATCAGATAGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCGATTTTCAAAGTACATAGAGATATCAAGGGCGGCAATATTTTGTTAACCGAACAAGGAGATGTCAAGTTGGGTGATTTTGGAGTTGCAGCCCAGCTAACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCCCATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATACGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATCGAAATGGCTGAGGTTTTATTCATGATATCTATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGTTGTTCCACGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAGATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGCGCATCAGCAATGTTGCCGAAGATTGAAAAGGCAAGGAAAATCAGGACTTTGTTGATGGCTCAGCAAGCTCGTAGTGTTCCTCCAGATGCATCAGGAGATGGTACTATAGTAGCTGCAAAGTTGAATCAAAACTATGGAGATACTGTTCCTTCAAAACCTCAGAATGTTGGACTTCAGGTAGCAAATGAAATGTCATGGAGGAAGCAAGAGCAATCGGGTGTAGAAGCCGAAGGTACTTTTGGCACTATGATAGTCCATGATGGAGATGAAAATGATAAGGTGGCCTCTCGACTGGATACTGGCAATGCTGTAGCACCAACTGGTCCTTCAAGCAATGAGAGTCAATCCGTTGGGGTAACTGGAGTAAAAATTGTGGACTCTAGTGTGGTGGATCGTACGGGAGGTATTGCTAGTAATAATCTTGATGGAAAATTAGATCCTGCCATTCCTGCATCTTCCCCCTCATTTTTGGGTATTCATGAGCTTAGCACGTTGGAAAATGAATCTGTCAGCCGGAAATCTTTTGCTTTGCAGGATAAGCTTTGGTCCATTTATGCAGCGGGTAACACTGTACCCATTCCATTCTTGAGAGCTACTGATATATCCCCCATTGCTTTGTTATCTGACAATGTCCTCGGAGGCATGCAACAAGATAACAGGGGGACTGTTGCAGTGGAAACGCTTCAGGAACTCTTCACCGGTGATGGACAATCAAAGAAGGGTCGCAGGGGACAAAATGAGATGCCCCTTCCATCCAGTGTTTATCAAAGACTTACTTCAAGTCCGACCCTATTGAATCTTGCCCAGGCTCTAGCTTACCACAGAATGTGTTATGAAGATATGCCGCTTCAGGAGCTGCAGGCGACTCAAGAACAACAAACCATCCAAAATCTTTGTGATACACTTAGAACTATCCTTCGATTGAGAATCGTGCCGCAACCGCTAAAACCCGCGAAAGCCGAGCCCTTCATAGCAGCGGCTTCGAACTCCAAGCTTCCATCAATCAACCGACGAGGCAAAACGATGAGTGGCAGCAGGATTGCTCGTACTTTGCTTCATCGAGCTCGAAGGCCCGCCGCTTTCTCTTCATTTTCCTCCGCCGGAAGGCCGTCTTCTATAGTCTTTGGCGCCGATGCAAGGTCTTCTCAAAGTTCTTGCTCCTCTTCCTCCGGTCATGTTCATTTCCGTCGCGAGCACGCATTCGCCTTTTCTCCTTCACCAACCGTACGCTTATTCAATACCAATTGCTCTAAAGAATTTGAAGATGAAGTAAAAGAGCACAATCCACTTCAATACGGGAGGGATGAAGGGGAAGAAACTACGGATGGATGGGAAGAAGACGATGATCTGGAGCCTGAGCTTGGTGATGGAGGGGGTGGTGGTGGTGTTGTTTTGCAAGGCGTTCCATGGGGTGAACGCGTTCTTGCTCTTGCTCACGAGGTCTTGCTGCAATTTGGCGATGACATAATACTCTATTCTTTTAAGACTACTCTACGTGGATATATTTATGTCAGATTAGACAAGCTCTCAAACGAATATGGGTGTCCCAGCTTGGAGGAACTTGAAAGTTATAGCCAAGAGTACAAGAAAAGATTAGATGAAACTGGGGCACTTGGAAATATTCCGGATGATTTAGCTCTTGAGGTATCATCTCCAGGTGCAGAGAGATTACTCAAGGTCCCAGATGATCTGTTTAGATTTAAAGCCATGCCAATGCGAGTGTGCTATATAGAAGACGGAGAATCGAGAGGCACTGAGAATGATGGAGTTTTTATGATGGATCATGTGGATTTGGAATCTGAGAGCTGTGTCTGGAAATTAGCAAATGTAAAGGAAAATCGAGATCCTTTGAGTAAAGGCAGACCTTTGACTCCACCTCAAGGTCCTCAAGAAAGGACGGGTCTTCTGTGTGCTTTAATTCATGAGGAGCGTTATGTATTCATAGAATATTCTCCTTTTGGAATTGATATCTTTGTTAAGGATTTGATATACTGGGTTTCTCGGCTTTTCTTTACAAGGACCAAGCTATTGACAATGAAATATCGAGCAAAATGTGGATGCTCTTTTGAGTGGGATTCTTGTCTGACACCTCGCTCGTCTTTATTCACTCAAATGCCTCCAAATCACTTTCCTCTTCTGCCGTTTAGCTCCTCTCATGGAACTTCAGAGCTTTTGGGGTAA 3750 46.61 MDPPPSYRSRRLTNKPQLYSTVVIHSNSDSDADNKPSDRRLQRRRRPPSEGQDLYATMVYKDVDKGHEDEDDDDSSLPPLLKRLPKDFGGGAPIDYNDDEDFGFDHDTEDFGTVIVKTGRSRPLNRSLSSSVSAKPRSSALPSVNFQTGSSGTRSGGRDGSEDGDVSEEDDGDGYSTFVVKPSARSRNRESVSDTILRRSVASRSDTRDGGGGLEGSTLGRAVASMQGMGDLGFGKQRKGTGSPKSEEGGGRMRSKVSTSSIPESITREDPNTKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLLMAQQARSVPPDASGDGTIVAAKLNQNYGDTVPSKPQNVGLQVANEMSWRKQEQSGVEAEGTFGTMIVHDGDENDKVASRLDTGNAVAPTGPSSNESQSVGVTGVKIVDSSVVDRTGGIASNNLDGKLDPAIPASSPSFLGIHELSTLENESVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGMQQDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPSSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRLRIVPQPLKPAKAEPFIAAASNSKLPSINRRGKTMSGSRIARTLLHRARRPAAFSSFSSAGRPSSIVFGADARSSQSSCSSSSGHVHFRREHAFAFSPSPTVRLFNTNCSKEFEDEVKEHNPLQYGRDEGEETTDGWEEDDDLEPELGDGGGGGGVVLQGVPWGERVLALAHEVLLQFGDDIILYSFKTTLRGYIYVRLDKLSNEYGCPSLEELESYSQEYKKRLDETGALGNIPDDLALEVSSPGAERLLKVPDDLFRFKAMPMRVCYIEDGESRGTENDGVFMMDHVDLESESCVWKLANVKENRDPLSKGRPLTPPQGPQERTGLLCALIHEERYVFIEYSPFGIDIFVKDLIYWVSRLFFTRTKLLTMKYRAKCGCSFEWDSCLTPRSSLFTQMPPNHFPLLPFSSSHGTSELLG 1249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11582886 11599330 - CmoCh18G011220.1 Cmo18g01122 402895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01122 1249 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 217 821 - -
Cmo18g01122 1249 MobiDBLite consensus disorder prediction 953 981 - -
Cmo18g01122 1249 Pfam Protein kinase domain 275 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01122 1249 Gene3D Transferase(Phosphotransferase) domain 1 271 548 - -
Cmo18g01122 1249 MobiDBLite consensus disorder prediction 24 103 - -
Cmo18g01122 1249 MobiDBLite consensus disorder prediction 962 977 - -
Cmo18g01122 1249 ProSiteProfiles Protein kinase domain profile. 275 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01122 1249 MobiDBLite consensus disorder prediction 115 271 - -
Cmo18g01122 1249 SMART serkin_6 275 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01122 1249 MobiDBLite consensus disorder prediction 253 268 - -
Cmo18g01122 1249 MobiDBLite consensus disorder prediction 31 50 - -
Cmo18g01122 1249 MobiDBLite consensus disorder prediction 120 157 - -
Cmo18g01122 1249 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 217 821 - -
Cmo18g01122 1249 ProSitePatterns Protein kinases ATP-binding region signature. 281 304 IPR017441 GO:0005524
Cmo18g01122 1249 SUPERFAMILY Protein kinase-like (PK-like) 273 518 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00844 Cmo-Chr9:4321404 Cmo18g01122 Cmo-Chr18:11582886 3.27E-72 dispersed
Cmo15g00350 Cmo-Chr15:1636510 Cmo18g01122 Cmo-Chr18:11582886 4.38E-56 dispersed
Cmo15g00630 Cmo-Chr15:3053207 Cmo18g01122 Cmo-Chr18:11582886 1.25E-37 dispersed
Cmo18g01122 Cmo-Chr18:11582886 Cmo01g00267 Cmo-Chr1:1218983 1.92E-49 dispersed
Cmo18g01122 Cmo-Chr18:11582886 Cmo01g01271 Cmo-Chr1:10161747 6.81E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75080 PF00069 Pkinase 1.10E-63 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01122 - - csv:101209775 1310.82