Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01124 ATGGGCGAAGCAAACGAAGCAGGAAGTAGAGGATTGGAGAGGGTTCCTCTGCAAATCGAGAAGTACCCAACAGATCTATTGCAGAGATTTTTGTGTAGCGATTCACGTGAGGCTAAACTTGGGGGTTTTAATGAAGAAGATGAAGAAGAAGCAGGGGAGATTGAGCTCAATCTTGGGCTTTCACTTGGGGGTCGATTTGGGGTTGATAAAAATTCCAAGCTTATTCGGTCGTCGTCGGTTGTCGGGACGATACCGCTTTTGAGAGACGACGAGGGCTCTGTTCCGGCGGCGGTGTCTTACCCGGCGCTGATTCGGACGGCGTCTCTTCCGCCGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGCGTTGCAGACATTGAGGCGAATGGAGGCGAAGAGGAGGCGGTTTGAGAAACAGAGGAGTAAGGATGGTATTGGGATTGAAGAAGAGAGGCGAGGAATTGATGGTCTTACTGTATTGAATTTGCGAGAGAAAAGGCCTTGTGCTGGTGTGTCGACGGTGGTGCCACCGTTTGGGTTGCCTACATGGGCTGCAGCCGCCCGTCATGTTGGCGGAACTCTGGGTGGTGGTGGTGGCGGTGGCGGTGGCTTACCGGTTGTCCGACAGCCCGCGTCTCAGTGTTCCGCTGAATCGCAGGGCGGAAGCTCGTCGGGAATGTCTGAATTGGACAGCAAACACATCCAAGGAACAAGCAATTACGGTGAAGCGAGAAGCTCGTCACAAGAACAAGGCAATCCAGAGGCTGCAGGTTCCGTAGGATCGAATAAGGCGTGTGAGAACCCATCGGGCAGTTCGAAAGCGGAAACAAGAAACCCGAGCGAGAACCGGGGAAGAGAAACGGGAACGACGTCGATGGAAGACATGCCATGTGTGTTCACAATAGGGGATGGGCCTGGTGGGAGAAGGGTGGAAGGGATACTTTACAAGTATGGGAAAGGGGAGGAAGTGAGGATAATGTGTGTATGCCATGGGAAGTTTCTGTCACCGGCGGAGTTTGTGAAGCATGCTGGTGGGAAGAATGTGGCTCATCCGCTAAGACACATAGTTGTCAATCCCAATTCTGGCCCTTCTTTGTGA 1098 53.1 MGEANEAGSRGLERVPLQIEKYPTDLLQRFLCSDSREAKLGGFNEEDEEEAGEIELNLGLSLGGRFGVDKNSKLIRSSSVVGTIPLLRDDEGSVPAAVSYPALIRTASLPPETEEEWRKRKALQTLRRMEAKRRRFEKQRSKDGIGIEEERRGIDGLTVLNLREKRPCAGVSTVVPPFGLPTWAAAARHVGGTLGGGGGGGGGLPVVRQPASQCSAESQGGSSSGMSELDSKHIQGTSNYGEARSSSQEQGNPEAAGSVGSNKACENPSGSSKAETRNPSENRGRETGTTSMEDMPCVFTIGDGPGGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGPSL 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11602435 11604960 + CmoCh18G011240.1 Cmo18g01124 402897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01124 365 MobiDBLite consensus disorder prediction 196 296 - -
Cmo18g01124 365 MobiDBLite consensus disorder prediction 211 277 - -
Cmo18g01124 365 Pfam Putative nuclear localisation signal 103 231 IPR032310 -
Cmo18g01124 365 Pfam Ethylene-responsive binding factor-associated repression 49 82 IPR012463 -
Cmo18g01124 365 PANTHER NINJA-FAMILY PROTEIN AFP1 19 361 - -
Cmo18g01124 365 PANTHER AFP HOMOLOG 2 19 361 IPR031307 GO:0007165
Cmo18g01124 365 Coils Coil 119 139 - -
Cmo18g01124 365 Pfam Tify domain binding domain 323 357 IPR032308 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01789 Cmo18g01124 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00004 Cmo-Chr18:8883 Cmo18g01124 Cmo-Chr18:11602435 2.67E-36 dispersed
Cmo18g01124 Cmo-Chr18:11602435 Cmo19g00191 Cmo-Chr19:1230598 3.84E-18 dispersed
Cmo13g01118 Cmo-Chr13:9123617 Cmo18g01124 Cmo-Chr18:11602435 3.40E-32 wgd
Cmo18g01124 Cmo-Chr18:11602435 Cmo04g01789 Cmo-Chr4:8992727 3.11E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01124 - - cmos:111450062 684.485