Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01126 ATGTGGAAAAGAGCTGTGTGTTCGATTCCTCGCAGGTTGTTTTCTTCTACACCAGAAGTCTCATCGCTCTACTCCTTCCTCCAACCCTCCCTCTTCGCCCCAAAGCGAGCACCATTTTCGCCATCTCAAGAATCCACCGACCTCCGTCAGAATCAAACTCCTCAAATTTTGACTACAGACCGTGTCGCCGCCGTAGAAACGACGCTCCACAAGTCCCTTCTCACCAGCGACACTGACGAGGCATGGAAATCCTTCAAACTGCTCACGAAAAGCTCCGTTTTCCCATGTAAGTCTCTCACTAATTCACTTATTGCCCACTTATCCTCAATCGGGGGCGTTCATAATCTGAAAAGAGCCTTTGCATCTGCGGTGTTTGTTATTGAAAAGAAACCCGAATTATTGGATTTTGGATCTGTCAAAACCCTATTAGCTTCTATGAAATGTGCCAACACTGCTGCCCCTGCTGTTTCTTTGATTAAATGCATGTTGAGGAATCGATGTTTTGTGCCTTTTGAATTCTGGGGCAATGAACTTGTTAGTATTTGCAGGCAGAGTGGTAGTTTGATTCCCTTTTTAAGAGTGTTTGAAGAGATTTGTAGGATTGTTTTAAACGAGAGGTTAGATTCTATGAAACCAGATCTCAATGCGTGTAATGCAGCACTTGAGGGCTGTTGCCATGAGCTTGAATCTGTAACGGATGCCGAGCACGTCGTTGAAACGATGTCGCTTTTGAATCTTCGGCCTGATGAAGTGACTTTTGGTGCTCTTGCTCATTTGTATGCATTGAAGGGGCTTGAACAGAAGATAATTGAGTTAAAACGTTTGATGGGAAGTTTTGGTTTTGCATCTAAGAGTCTGTTCTTTAATAATTTGGTAAGTGGATACGTTAATTCAGGCGACTTAGCTGCTGTTTCGAAGACTATGTTGGATGGTTTGAAAGATGAATGTGGAGAACATGTAAGATTTGAGGAAAAAACGTATTTGGAAGTGGTTAAGGCTTTTGTTCAGAGTGGAAATCTGAAGGAATTATCTTCATTGATTGTTGATGCTCAGAATTTAGAGTCTTTAACGGACGTCGATGGATCGATCGGATTCGGTATCATTAATGCTTGTGTTAATATTGGATGGTTAGATAATGTGCATGCCATTCTGAAAGAAATCAATTCCCAGGGAGTTTCTGTAGGCCTTGGAGTCTATATGCCGATCCTGAAGGCGTACCAGAAGGAGCGTCGAACAGCTGAAGCCACCCAATTAATCATGGATGTTAGCAGTTCCGGGCTACAGTTGGTTGCAGAAACTTTTGATGCTCTTATAGAAGCATCGATGTCGAATCAAGATTTTCAGTCGGCTTTCGCTTTGTTCAGGAAAATGAGGGAAACGAGAAAATCCAACACGAACGCTAGCTATCTAACTATTATGACTGGCTTAATGGAGAGCCATAGGCCTGAGTTGATGGCTGCCTTCTTAGACGAAGTTGTCGAGGATCCTCTCGTTGAAGTTGGAACTCATGATTGGAACTCTATTATACATGCCTTTTGCAAAGCTGGAAGGCTCGAGGATGCGAGAAGAACGTTTCGAAGAATGAAGTTTCTGCAGTTTGAACCGAACGAACAAACGTTCTTGTCTCTAATTAATGGCTATGTGTCGGGAGAGAGATATTTCTGTGTTTTGATGCTGTGGAACGAACTTAAGTGGAAGATTACTGCAAATGGGGAGAGAGGTTTCAAACTCGATAGCAACTTGGTTGACGCGTTCTTGTATGCTCTGGTCAAGGGAGGTTTCTTCGACGCCGTGATGCAAGTTGTCGAAAAAACTAAGGATTCGAAGACCTTCGTCGATAAGTGGAAATATAAGCAAGCATTCATGGAGACTCATAAGAAACTCAAAGTGGCAAAATTGAGGAGGAGGAACCACAGGAAAATGCAATCACTTATTGATTTCAAGAACTGGGTTGGTTTGAATGCTTGA 1968 42.84 MWKRAVCSIPRRLFSSTPEVSSLYSFLQPSLFAPKRAPFSPSQESTDLRQNQTPQILTTDRVAAVETTLHKSLLTSDTDEAWKSFKLLTKSSVFPCKSLTNSLIAHLSSIGGVHNLKRAFASAVFVIEKKPELLDFGSVKTLLASMKCANTAAPAVSLIKCMLRNRCFVPFEFWGNELVSICRQSGSLIPFLRVFEEICRIVLNERLDSMKPDLNACNAALEGCCHELESVTDAEHVVETMSLLNLRPDEVTFGALAHLYALKGLEQKIIELKRLMGSFGFASKSLFFNNLVSGYVNSGDLAAVSKTMLDGLKDECGEHVRFEEKTYLEVVKAFVQSGNLKELSSLIVDAQNLESLTDVDGSIGFGIINACVNIGWLDNVHAILKEINSQGVSVGLGVYMPILKAYQKERRTAEATQLIMDVSSSGLQLVAETFDALIEASMSNQDFQSAFALFRKMRETRKSNTNASYLTIMTGLMESHRPELMAAFLDEVVEDPLVEVGTHDWNSIIHAFCKAGRLEDARRTFRRMKFLQFEPNEQTFLSLINGYVSGERYFCVLMLWNELKWKITANGERGFKLDSNLVDAFLYALVKGGFFDAVMQVVEKTKDSKTFVDKWKYKQAFMETHKKLKVAKLRRRNHRKMQSLIDFKNWVGLNA 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11610277 11612244 - CmoCh18G011260.1 Cmo18g01126 402899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01126 655 Pfam Pentatricopeptide repeat domain 418 469 IPR002885 -
Cmo18g01126 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Cmo18g01126 655 Gene3D Tetratricopeptide repeat domain 321 444 IPR011990 GO:0005515
Cmo18g01126 655 Gene3D Tetratricopeptide repeat domain 176 317 IPR011990 GO:0005515
Cmo18g01126 655 Pfam PPR repeat family 505 548 IPR002885 -
Cmo18g01126 655 PANTHER OS01G0788900 PROTEIN 1 655 - -
Cmo18g01126 655 PANTHER BNAC05G43320D PROTEIN 1 655 - -
Cmo18g01126 655 Gene3D Tetratricopeptide repeat domain 445 651 IPR011990 GO:0005515
Cmo18g01126 655 TIGRFAM PPR: pentatricopeptide repeat domain 505 537 IPR002885 -
Cmo18g01126 655 Coils Coil 655 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00329 Cmo-Chr8:2050653 Cmo18g01126 Cmo-Chr18:11610277 9.09E-07 dispersed
Cmo18g01126 Cmo-Chr18:11610277 Cmo14g00181 Cmo-Chr14:825737 6.37E-38 dispersed
Cmo18g01126 Cmo-Chr18:11610277 Cmo03g00450 Cmo-Chr3:5054725 2.21E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01126 - - csv:101212045 1093.95